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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0184800 |
| Transcript ID | LotjaGi4g1v0184800.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Desaturase; TAIR: AT2G46210.1 Fatty acid/sphingolipid desaturase; Swiss-Prot: sp|Q3EBF7|SLD2_ARATH Delta(8)-fatty-acid desaturase 2; TrEMBL-Plants: tr|A0A1J7I1T3|A0A1J7I1T3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0184800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:40166285..40167896) extracted from Lotus japonicus Gifu genome v1.2.
CGAATAACCATAAAGCCACAAACACCGACAGATTGAGATCCAAGCAGGGAGGGGCATTAGATCCCTGCCGCAACCATATC TAACCTGCATTGTAATTTAGCTTGTGTTGTGTTTGTGAACAACCCAAATCACAGGCACAGCGTAAAGGGTAAGAGATTCC TTGGTTTCAGATCTTGTTGTTTTGCAGTTGCCGGATCAGATCCCTCTTTTTTTCAGTGAATCTGTGAGTTAATCATATAT ATTTCTGTGCAGCCCAGCTATGAAGGGTGAGGAGGGGAACAAGAGGTACATCAGCTCTGAGGAGTTGAAGGAGCACAACA AGCAAGGAGATCTGTGGATATCAATTCAGGGTAAGGTTTACAATGTCTCTGATTGGGCCAAGGATCACCCTGGTGGTGAG GTTCCCCTTTTGAATCTTGCTGGCCAGGATGTCACTGATGCATTCATTGCATACCATCCTGGCTCAGCATGGCAATATCT TGACAAATTCTTCACCGGGTATCACCTCAACGATTTCCAAGTCTCTGATGTATCCAGGGATTACAGGAAACTCGTGACCG AGTTTGTTAAATTGGGGCTTTTTGAGAAGAAAGAGCATGTCACCTTATACACCCTCACCTCTGTTGCTGTTATGTTTTCC ATTGTTGTTTATGGTGTCCTCAGATGCACAAGCGTGTGGGCTCATTTGGGCTCTGCCATGTTGCTGGGTTTGCTTTGGAT GCAGAGCACTTATGTGGGTCATGATTCTGGTCACTATGAGGTTATGTCGAGTCGCGGTTACAACAAATTAGCCCAAGTTC TGTGTGGGAATTGCATGACTGGGATAAGCATTGCCTGGTGGAAATGGACTCACAATGCTCATCACATTGCCTGTAACAGT CTTGACTATGATCCTGATCTGCAGCATATCCCTGTTTTTGCTGTATCTTCTCGTTTCTTCAGTTCCATTAGATCTTGTTT CTATGGGAGGGAGCTCAAGTTTGATGCTTTGTCGAGGTTTCTGATCAGTTACCAGCACTGGACATTCTACCCGGTCCTGT GCTTTGCCAGGGTCAACTTGTACCTTCAGACTTTTCTGCTCTTGTTTTCAGGGCGTAAAGTCCCAGATAGAGCTTTAAAC ATATTGGGGATCCTTGTATTTTGGACTTGGTTCCCTCTTCTTTTGTCGTGTCTGCCAAATTGGCCAGAAAGGATTATGTT TGTGCTAGCTTCCTTTGTTGTTTGTTCTGTTCAGCATCTCCAATTCTGTTTGAACCATTTTGCTGCAAATGTGTATGTGG GGCCACCAAAGGGGAATGACTGGTTTCAGAAGCAGACAAGTGGGACATTGGACATCTCTTGCTCATCTTGGATGGATTGG TTCTTTGGTGGTTTGCAGTTTCAGCTTGAGCACCATTTGTTCCCAAGGCTTCCAAGGGCTCAATTGAGGAAGATATCTCC ATTGGTGATTGATCTTTGCAAGAAGCATAATTTGCCTTACAGGAGTTTGTCATTTGTGGAGGCCAATCTTTGGACTCTTA AGACACTCAGAACTGCTGCTCTTCAAGCTAGGAACCTCACTGACCCTTCTTCCCAGAATTTGTTGTGGGAAGCTTTCAAC ACTCATGGCTGA
CDS sequence (LotjaGi4g1v0184800.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGGGTGAGGAGGGGAACAAGAGGTACATCAGCTCTGAGGAGTTGAAGGAGCACAACAAGCAAGGAGATCTGTGGAT ATCAATTCAGGGTAAGGTTTACAATGTCTCTGATTGGGCCAAGGATCACCCTGGTGGTGAGGTTCCCCTTTTGAATCTTG CTGGCCAGGATGTCACTGATGCATTCATTGCATACCATCCTGGCTCAGCATGGCAATATCTTGACAAATTCTTCACCGGG TATCACCTCAACGATTTCCAAGTCTCTGATGTATCCAGGGATTACAGGAAACTCGTGACCGAGTTTGTTAAATTGGGGCT TTTTGAGAAGAAAGAGCATGTCACCTTATACACCCTCACCTCTGTTGCTGTTATGTTTTCCATTGTTGTTTATGGTGTCC TCAGATGCACAAGCGTGTGGGCTCATTTGGGCTCTGCCATGTTGCTGGGTTTGCTTTGGATGCAGAGCACTTATGTGGGT CATGATTCTGGTCACTATGAGGTTATGTCGAGTCGCGGTTACAACAAATTAGCCCAAGTTCTGTGTGGGAATTGCATGAC TGGGATAAGCATTGCCTGGTGGAAATGGACTCACAATGCTCATCACATTGCCTGTAACAGTCTTGACTATGATCCTGATC TGCAGCATATCCCTGTTTTTGCTGTATCTTCTCGTTTCTTCAGTTCCATTAGATCTTGTTTCTATGGGAGGGAGCTCAAG TTTGATGCTTTGTCGAGGTTTCTGATCAGTTACCAGCACTGGACATTCTACCCGGTCCTGTGCTTTGCCAGGGTCAACTT GTACCTTCAGACTTTTCTGCTCTTGTTTTCAGGGCGTAAAGTCCCAGATAGAGCTTTAAACATATTGGGGATCCTTGTAT TTTGGACTTGGTTCCCTCTTCTTTTGTCGTGTCTGCCAAATTGGCCAGAAAGGATTATGTTTGTGCTAGCTTCCTTTGTT GTTTGTTCTGTTCAGCATCTCCAATTCTGTTTGAACCATTTTGCTGCAAATGTGTATGTGGGGCCACCAAAGGGGAATGA CTGGTTTCAGAAGCAGACAAGTGGGACATTGGACATCTCTTGCTCATCTTGGATGGATTGGTTCTTTGGTGGTTTGCAGT TTCAGCTTGAGCACCATTTGTTCCCAAGGCTTCCAAGGGCTCAATTGAGGAAGATATCTCCATTGGTGATTGATCTTTGC AAGAAGCATAATTTGCCTTACAGGAGTTTGTCATTTGTGGAGGCCAATCTTTGGACTCTTAAGACACTCAGAACTGCTGC TCTTCAAGCTAGGAACCTCACTGACCCTTCTTCCCAGAATTTGTTGTGGGAAGCTTTCAACACTCATGGCTGA
Protein sequence (LotjaGi4g1v0184800.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKGEEGNKRYISSEELKEHNKQGDLWISIQGKVYNVSDWAKDHPGGEVPLLNLAGQDVTDAFIAYHPGSAWQYLDKFFTG YHLNDFQVSDVSRDYRKLVTEFVKLGLFEKKEHVTLYTLTSVAVMFSIVVYGVLRCTSVWAHLGSAMLLGLLWMQSTYVG HDSGHYEVMSSRGYNKLAQVLCGNCMTGISIAWWKWTHNAHHIACNSLDYDPDLQHIPVFAVSSRFFSSIRSCFYGRELK FDALSRFLISYQHWTFYPVLCFARVNLYLQTFLLLFSGRKVPDRALNILGILVFWTWFPLLLSCLPNWPERIMFVLASFV VCSVQHLQFCLNHFAANVYVGPPKGNDWFQKQTSGTLDISCSSWMDWFFGGLQFQLEHHLFPRLPRAQLRKISPLVIDLC KKHNLPYRSLSFVEANLWTLKTLRTAALQARNLTDPSSQNLLWEAFNTHG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 113 | 113 | - | – | |
| PIRSF | 1 | 439 | 439 | 6.8E-130 | ||
| Gene3D | 2 | 87 | 86 | 6.2E-22 | ||
| PANTHER | 5 | 450 | 446 | 3.5E-296 | – | |
| PANTHER | 5 | 450 | 446 | 3.5E-296 | – | |
| ProSiteProfiles | 8 | 87 | 80 | 23.112 | ||
| SUPERFAMILY | 8 | 84 | 77 | 1.26E-26 | ||
| SMART | 11 | 83 | 73 | 1.2E-22 | ||
| Pfam | 13 | 81 | 69 | 2.1E-22 | ||
| TMHMM | 112 | 134 | 23 | - | – | |
| Phobius | 114 | 133 | 20 | - | – | |
| Phobius | 134 | 138 | 5 | - | – | |
| Phobius | 139 | 156 | 18 | - | – | |
| TMHMM | 139 | 161 | 23 | - | – | |
| Pfam | 139 | 409 | 271 | 9.4E-33 | ||
| CDD | 143 | 405 | 263 | 5.2159E-61 | – | |
| Phobius | 157 | 176 | 20 | - | – | |
| Phobius | 177 | 196 | 20 | - | – | |
| Phobius | 197 | 215 | 19 | - | – | |
| Phobius | 216 | 234 | 19 | - | – | |
| Phobius | 235 | 253 | 19 | - | – | |
| TMHMM | 254 | 276 | 23 | - | – | |
| Phobius | 254 | 276 | 23 | - | – | |
| Phobius | 277 | 287 | 11 | - | – | |
| Phobius | 288 | 305 | 18 | - | – | |
| TMHMM | 288 | 310 | 23 | - | – | |
| Phobius | 306 | 311 | 6 | - | – | |
| Phobius | 312 | 329 | 18 | - | – | |
| Phobius | 330 | 450 | 121 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Lipid metabolic process | The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. |
Expression pattern of LotjaGi4g1v0184800.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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