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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0193400 |
| Transcript ID | LotjaGi4g1v0193400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | SNARE; TAIR: AT2G35190.1 Putative plant snare 11; Swiss-Prot: sp|Q944A9|NPS11_ARATH Novel plant SNARE 11; TrEMBL-Plants: tr|I1MV96|I1MV96_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0193400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:44475309..44482009) extracted from Lotus japonicus Gifu genome v1.2.
TGGCTTAATTGCAGTTTTGATCCCTGATGTATTGTCATTGTGCGATTTGGGTCCCTTATCTTCTAAACGAGCGATTTTAA TCCCTCATCTTCCATTTTGTGAAAATTGGGCCCCTCCGTCAAGTTGACATCCAAAATTAAACGGAAATTGCTGACTCATT ACTATTTACACCATCTTAACCTATCTTTGCTAATTACACCACTTTAATAACACATCAGTAAATTCTTTCAAAAAAAAAAT AACACATTAGTAAATAAAAATGAAAACAAATAAAACAACTTAATTAAAAAACCAAATTAAAATCAGAATAGAACAAAATA TAACTTAAAAAAAGTCCAAATCAATTCATCTTCTTCCTTGGTTTAAAAAAAAAAAAAAACTTCTTCCCCAACGTTCTGCA TTCTGCATCCCTTCACCATAGCCATAGCCACAACCACCAAGCTCTACCATACACAGTCAACGCCAAACCACCACCACTTT CTTGTCAACCCACTGTCTTCTTCTCCCTCATATCTGAACCTGCTCCTCTCCATAACAAAACCCACATCCACAAAATCCAC ATTAACTATTTCTGATGAGGAAAAGAAAAATAGAACTCAAGAGAGAGAGAACCGAATATCATGGAAGGGAAGGGAAGATT GGAGATGATGACGAAGAGGATTGGCAAGGCGGCTCCTCCTGGTGCTCGCGGCGGTTTCCGCGACAGCGATTGAGGCGGCA AGGAGCGGCGACGCAGTGGAGATGGAGCGGCGGTTTCCCTGGCGCAGCGGCATCAACGAAGGAAGCTTCACAACAGTCGG ACTTGACATAGACCTTCGATGGGGAGATCGGGGAGGACGACGATTGTTGCAGCGTTTGTAGTGATTGTGACCGCGGTGGA GCTCAGGGGCTGGGCAACAGAGGACGACGACAAGGTTCAGGGAGAGTTTCCGGCTATGTCTGCAAGGAATTTCTATGTTT CTGGAATTTTACCTTTTCCCCTCTTTCTGGGTTCCCTGCAGAGATTTTTATTGATGTTGTTCACTTGTTCTTGATGAAGT TGTTGATCTGTTAAAGAAAATAACTTGAAGATTCAATTTTTGTTTGTTTCTGGAATTGATGTTAATTTGAAACCCTTTAT GGGTTGTTTTACTTTGAAGCAGGGAGAAAATGGTTGATTCATCCCGTTTTCTAGATAATTTGGGTTTGATTCAATATATG TGGGCTTTAATTTACTGTGTAAGATTTGATTTCAAATTCATGGTATTGGATGAAGAGGGAAGAAGAAGAAGGGAGGCGAG GTGGTGCTGTGTAAAGGGTTGAAGAAGATAAAAAGTTAAAAAAAAATAATAAATTAAAAGAAAAAAGAAATATTTTTAAA GGAAAAGAAAATTATGTGACATGTCATCCTAGTGGCGTGCAACGTCAGGGCCACGTCAGTTAAAGAGGCCACATCAACAA CTTCCGTTTAATTTTGGAAGGCAACTTAACGTAGGGGCCCAATTTTCACAAATTGGAAGATGAGGGATTAAATTCGCTCG TTTTGAACATAAGGGACCCAAATCGCACAATGACAATACATCAGGGATCAAAAATGCATTTAAGCCTTTCTTAATCTAAG AGAATTAGGTAAAGTGACCTTATAATAAGGAACGGAGGAAGTATTATTATGTATCTATAATCCAAAAGACGAGGGAACAC AATAACGAAACTACCCCCACCTTCACACGAACCCAATGGCGGTTTAAATTAAACGACCAAATTCGTTTAAACCAAAACCA AAAAAACCAAAAACAAAAATTAAAAAAAATTCAGAAATCACAAGGTTTCTTCTGTAAATCAAATCAATCATCAATGTCGA GGGAGGGAATGAGAAACAAGACAACGCCCAATGTTTTCTTCGTTCCTCGACACTGATAACCGCAGGTTTGCTACCTCGTA AATTCAAAATCAAATCTCTGTTTCTAATCTGCATTGTTCAAATTCCTCAATCAGATCTCGCTGTTGCTGCGGAATCTGAA CATTGAGGTTGAGATGGATCAGTTGTCGGCGATCAGCGAGGACCTGGCGGAGATCGACGGACACATCGCCGATAATTTCC GCGCATTAGCGTCAGAATCTTAAACCTCTCTCGTGTTTTTGTTTTCTCGCTGTGTTGTTTCCTGAACCCGTTCTGGTGTT TGTTGTTTCGTTCTTGCAGAAATGGGTTTCAGAAGTTGGAGAAGATTAAGGATTCCAGCAGGAAGAGCCGCCAGTTGGAA GAGCTCACCGAGAAAATGCGAGACTGCAAACGGTAAACGCATGATCTCGCCATTTTCAGATCTGCATTATAGACAAATGA CCACAAATTTGAATGTGATTTTGATTTGATTTCGCATTGGAAGCTCGCGGAGCTGTGATCATGAATTGCCGTGATTTAAT TTAACAATTGAGGTTTCGGGTTTCGCTCTTTCTGCTTACTTAGGTGTATACATTTGTTGGATCTGTTTTTGCAGGCTTAT TAAAGATTTTGATAAAGAAGTCAAAACTTTGGAGGCGAGCTTTGACAGAGAAACCAACAAAATGTTGAATGAGAAAAAGC AGTCAATGGTGAGAACATTCTTAGCTCTATGGATACCTACATGATGATCGACTTTTGTCTGTTGACGCCTCAATTTTGAT ACTTTGTGCTTTTTGTATACCGGTCTACTGAAATTATGCGTGACGTAACAATCATCAATTTTGCTGACAAACATTTGCCA TTTTTGTTGCAGATCAAAGAGTTAAATTCGTATGTTGCTTTGAAAAAGCAGTAAGTGAAACCATTATGTTAATTGATCGA TTTTGTTCTGTATTGAAGACATAGATTTCCCTTGCTGATATTATATATACTTTCTGCTTCTTTGAAATGTCATCAAAAGT TATTCTTTTCTTACATTAATGGGCTGTGTACTCTGATAGCATCAACCGATAATTGTGTGTGCTTTATTGTTGCAATGCAG ATATGCTTCAAGTATTGAGAATAAGCGAGTTGAGCTCTTTGAGGGGCCCAATGAAGGTTATGCTGAGGAAAATGTCTTGC TAGCTTCTTGTAAGCATTCCGGTTTCTTCATATTGGTTATGCTAATTTTTCGTGTATCATAAAATGTTTTTAGCAGTCCA ATAAATCAAATCAATAATCAATTTTTTCTTGTTTTAACATATTTCTCAGTTCTTCGACAATGTCTGTGCTTCTTCTTATG CTATATGACTTGTTGTTTTCATTTTGTATGGAGACACCTTCTAATTCTAGTAAATATTGATGCAATGAAGGGGGGGGGGG GCATAGATAGAAATTATGGAATGTAAGAAAATCCTTATACCTAATAAGTATGGTCATGGTTGGAGTGTTTTAATATGCAC TCATAATTCAACTTTGCACGCTTCATATTCTAACTTCCTGTCTGGCTTTGCTATGATATTTTTCCATTTTTAACAATTAT TTTTTTTACGAGAAAGCATAAGTAGATATAAAAAGCTTCTTCTTCTTCTTCCTTGGGGAAGCACTAATTTCTTGTTGGTC TTTAATGGCATATTTTATTGTTTCGCATAAAAGCACTTCTATATTTTGGCCAGCTACCTTAAAATGTTAAAAGTAGTTAC AAATTGAAAGATGATAAAAGCTAGCTGTGTATATTTCACAGCATGACCAGACAGAATTTAAGTTGTTTTCTATTTTGGTT AATGTGGAGTTATTATGATGTATTACAGCAATGACAAATGAACAGCTTTTTGATCATGGGCATCAGATGATGGATGAGAC AGATCAAGCCATTGAGAGGGGAAAGAAGGTTGGTATATTTCTTAAGTGCACTTTCATTTATTTCTCAATATACACTAAGT ATAATAGATTTTACAGTCTGCTATAGCATTTTTCTTGATGGAGAAGAAAATGACTTAGTTCAGCATGTTATACTTGCTTT CCTTTAACTATAATTATAGCAGCAGACAACCAGTTAAGAATCCGTGTTGTTTTTTCCTTTCATTCTGTCGCACGTACCAT CTTTATCACCGTGCCTTATTTTTGTGTCCCGCTATTTACTTGTTAGTTTCCTATTGTTTATGGAAAATGCTTTGTGGCAT GAAACGGAAGTATCGTGCGCTGAATAGTTCATTTTGATTGGTAAACCAGATTTTGTTTTAACTTTTAAAAAATAACCACC ACTTGCATGCATTTTTTAAATTATCAAAGTGAAAATAGAAGGTTCGTTGTTTTTGTGGAGAACATTAGTCGTGCCAAATA ACATTGGTGATTGTTTATATGGCACCTCCATCTGCTTGTCATTTTACTTCCTAAAATATCTTATGAAAGTTTAACTATCT CTTCTTAACACGTTCTTTGTCATTTAAATTTATGAACACATTATAGTGTGTTGTGCATATTTAATTTAGCATAATTCCCT TCAAGCTCTGCAATCCCAATCTTGCATTTATTAATTTCCAAGCTTGAATGAGTTTGGTTATACATTTCCATATCATTCTG TGTTAGAATTCTTCTGGCTCTCCATGATATTACAAAATCATAAAATCAGTGAAATGTGGTTGAAAAAGTGAGGGGGTGGA GAACAAACATTTCTATCTTTTTTCTGGTAGATAATAAGTTCGTATTCAAACGGGCTCTTAAATTCTTTTGTCCATCTCCT TGGGAGTAAAAAGGACAACTTTGCTGACCAAAAGTTTATTGCTGTGAACCTGCATTAATAGGTTGTTCTAGAGACAGTAA ATGTTGGTACAGAGACTGCAGCAGCTCTTAAGGCTCAGGTATGAATCTTATGCATAGACCCCAACCCCGAAATCAATCGC CTTAAAATACAAGTGAAAACCTGAATTTGACATGGAAACTAATGGCTGTAATCTCTTCCATGTTTAGACGGAACAAATGA GCAGAGTTGTCAATGAGCTGGATTCTATCCATTTCTCTATAAAGAAAGCCTCTAAATTGGTCAAGGAAATCGGTAGGCAG GTCAATTTCTACAGAATCTACACCATGTTATGACAATATATTTACTATATGAATCATTTATTAGAAACTCACTGACGTTT TTGCAATAGGTTGCAACTGATAAGTGTATCATGGCATTACTTTTCCTTATTGTCATTGGAGTAATTACCATCATCATTGT AAAGGTGAGAAAATTTTACTTCTAAACTTTTATGATTCAATTTAAAACTATTACACTCTATTATTGTCTCTGTTTCATGG TGAATTTATTAAGGCTCAGATCACTTGTTTATCTATGGTAGAAATTTCTTGACAACAAGTAGAAACATTATATACTGATT TACTGATTAACTATCATATAGAACTCCCGTCTCTAAGTCTTCATTAGATACAGCTCTTGATGACCTTTTCCAGATCTGTA GCTTCTACTTTATATATTTTTAGGGCGTGTTGGGTAAACAGCTTAATTAAGCGCTTATTCATGAAATAAAGTGAAAATAG GTTATGGATAAACATAAGTTCTTATTCATAAGCTAATCTGAATAGCTTACAAAAATAAGCTAAAAAAGCTTAGAGGTAGA TTGCATAAGCGCTTATGCTATAAGATAAGCTCAAACGAGTTCTTCCAAACATGGCCTTAACATGTGTGCAATCGCTTTTG AGTCATTGATCCATACAGCCATGTCACTATTATCGTACTGAATTTCTCTCAAGACTATGATCATTATTTGTAGCATAGAT ACAATAAAGAAAGCTGCTTTTCAAATTCTATTGAGTTGGGATTTTAAAAAATCAAAGATGCCTTTTTTCATTGCCTATGA ATTGATAGTTACAAATGACCTTTTAATTTTTGTAAACAGTCACACCACCTTTCTTTCATTCTACATTCCAGAACCCAGCT TTGCTATGCATTTTCAAAACTGCTTGTCTCACTGAGCTAACTTGTCTTTCAAAATTTCAGCTTGTGCACCCAAACAACAA GGACATTCGCGACATTCCAGGATTAGCCCCTCCAGTCATGAACCGAAGACTGCTCTGGAGTCATCACAGATGAAGAGTTG TAATAAACATTGAGATGAGCTCATCAAATTGATTTCTTGCCTTTTGGTTTGATGGCGATGATATTGGCTTCAGCTGTTGC GAGAAACAAAGCTGCCAATACTATAGTTTGTTGTTGCATAATAGTGGAGAGGTTGATTGGTCTGAGGCATGATAGAACAT TGGTATAGGCATGTGCTCGCGATTTTTTGTTTTCTTAAACTGAACAAGTTTTACTATGTAGCTCCCATCTGTCGAATTAT AGGGAAAGCCAAACAAATGAGCCCTTGAGATTGTTTGCTAATTGTATTGTTGTCTATCTTGTAATATACAGTGACTTTTA TTTTTACAGTATTTGGTCCGGGAAAATGAAGGAAGGAAAGGAGGGATTGTAATATCTATTGTCCTAAATTCTCTAATTTT AGCTTTTGTAGTCATACTCCATTGAACCAGGTTTCATCCCTTTGTGGTAGAATCAGAGCTCTAGATTAATCTGAGTTAAC TGATCAATTTTATTACTCATACGGGTTAGGAAACAATCAGAGCTCTGGATTGCTTTGATAATGCAGACTTTATCATAGAA GAGAGTATATAAAGTGAGAGAAAAGAGAGTGGGAGAGTGAGAGGGGAAGCATTGCTTTATTTTTATTCAAGGATTAATTT GATGTTATTGGTTTTAGTTTGTGTACTAGTTTTGCCATTATGGAGGAAACTTATAAGTTCA
CDS sequence (LotjaGi4g1v0193400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCAGTTGTCGGCGATCAGCGAGGACCTGGCGGAGATCGACGGACACATCGCCGATAATTTCCGCGCATTAGCAAA TGGGTTTCAGAAGTTGGAGAAGATTAAGGATTCCAGCAGGAAGAGCCGCCAGTTGGAAGAGCTCACCGAGAAAATGCGAG ACTGCAAACGGCTTATTAAAGATTTTGATAAAGAAGTCAAAACTTTGGAGGCGAGCTTTGACAGAGAAACCAACAAAATG TTGAATGAGAAAAAGCAGTCAATGATCAAAGAGTTAAATTCGTATGTTGCTTTGAAAAAGCAATATGCTTCAAGTATTGA GAATAAGCGAGTTGAGCTCTTTGAGGGGCCCAATGAAGGTTATGCTGAGGAAAATGTCTTGCTAGCTTCTTCAATGACAA ATGAACAGCTTTTTGATCATGGGCATCAGATGATGGATGAGACAGATCAAGCCATTGAGAGGGGAAAGAAGGTTGTTCTA GAGACAGTAAATGTTGGTACAGAGACTGCAGCAGCTCTTAAGGCTCAGACGGAACAAATGAGCAGAGTTGTCAATGAGCT GGATTCTATCCATTTCTCTATAAAGAAAGCCTCTAAATTGGTCAAGGAAATCGGTAGGCAGGTTGCAACTGATAAGTGTA TCATGGCATTACTTTTCCTTATTGTCATTGGAGTAATTACCATCATCATTGTAAAGCTTGTGCACCCAAACAACAAGGAC ATTCGCGACATTCCAGGATTAGCCCCTCCAGTCATGAACCGAAGACTGCTCTGGAGTCATCACAGATGA
Protein sequence (LotjaGi4g1v0193400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDQLSAISEDLAEIDGHIADNFRALANGFQKLEKIKDSSRKSRQLEELTEKMRDCKRLIKDFDKEVKTLEASFDRETNKM LNEKKQSMIKELNSYVALKKQYASSIENKRVELFEGPNEGYAEENVLLASSMTNEQLFDHGHQMMDETDQAIERGKKVVL ETVNVGTETAAALKAQTEQMSRVVNELDSIHFSIKKASKLVKEIGRQVATDKCIMALLFLIVIGVITIIIVKLVHPNNKD IRDIPGLAPPVMNRRLLWSHHR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 260 | 260 | 1.9E-138 | – | |
| PANTHER | 1 | 260 | 260 | 1.9E-138 | – | |
| Phobius | 1 | 213 | 213 | - | – | |
| Coils | 38 | 79 | 42 | - | – | |
| SUPERFAMILY | 132 | 205 | 74 | 3.14E-17 | – | |
| Gene3D | 133 | 212 | 80 | 1.4E-17 | – | |
| SMART | 137 | 204 | 68 | 9.0E-11 | ||
| CDD | 139 | 203 | 65 | 3.63131E-17 | – | |
| ProSiteProfiles | 142 | 204 | 63 | 12.078 | ||
| Pfam | 151 | 232 | 82 | 4.7E-7 | ||
| Phobius | 214 | 234 | 21 | - | – | |
| TMHMM | 214 | 236 | 23 | - | – | |
| Phobius | 235 | 262 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | SNAP receptor activity | Acting as a marker to identify a membrane and interacting selectively with one or more SNAREs on another membrane to mediate membrane fusion. | ||
| Biological process | Retrograde vesicle-mediated transport, Golgi to ER | The directed movement of substances from the Golgi back to the endoplasmic reticulum, mediated by vesicles bearing specific protein coats such as COPI or COG. |
Expression pattern of LotjaGi4g1v0193400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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