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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0221700 |
| Transcript ID | LotjaGi4g1v0221700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Deoxycytidylate deaminase; TAIR: AT3G48540.1 Cytidine/deoxycytidylate deaminase family protein; Swiss-Prot: sp|Q5RC69|DCTD_PONAB Deoxycytidylate deaminase; TrEMBL-Plants: tr|I1K0B7|I1K0B7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0221700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:52573439..52577636) extracted from Lotus japonicus Gifu genome v1.2.
CTATTTTATAATTTTATCTCCCAAATTCATACATTTTGATTTGACAATTTGGACCCTGGAGCTGCGACTCGTGGCGGTTA CCATTGAATTCACCATCCACAAAGTCACAGTGGATACTGGAAACTGTTTTGCCCCCAAATCCAATCCAATCCAATCGTGC TTGAAACTCCATGAACTCTCGGGAAGCTACTCTGGTGGCGACGGCAACTGCGTTTGGTGCCTTGGCCTCCGCCATCGCTC TCCGCTTCTTCTTCAACCGTTCCCGACGGCAACCATCCAGAACCAATTTCTCGCAAAACGGCACCGTTTCCACTCCTCCG GACCCTTTCGACCCCTCCAGGCGCCATGGGTGAATTAAATAATTACTGAACTCGAATTCCCCTAAACTGCGATGTTCAAT TAAAGTTGAATGCTTTATTGCAGGTACTTGTCGTGGGATGATTATTTCATGGCAATTGCATTTTTGTCAGCTGAAAGATC CAAAGACCCTAACAGGCAGGTAGTATTTCTATTTCATTCTCTTGTTTCCTAATTTTGGTTTATTTTGGGATGAAATCTTT ATGCTTTGTTGCTGTTGTTGTTTTTACTGTAGGTGGGGGCTTGTTTGGTGAGTCAAGATGGTATAATTCTTGGTAAGTAA TGAAATCGGTAAGCGAAAATTGTGTTTGCATTGCATTGAATTGAATGAAATAAATTAATGTATACATCTATGTCTCCTTT TGCATAGCTTGCTTCAAAATCATGCTTATGGTATGAGAGTAAAATTTTGGTTCAGAAATGGAGGTAATATTGAGACTTGA GAGTAAGGGCATAGTGCTTTGGGGGTATGTTATCATAGGAGATAATAGAGGAAAGGGGGTTTAGTGTAGCTAAGATAAAA TTCTTCAAGGAATGATTAATTGCAGCCGAAGGGGATAGGCTACAATGCTGTAATCTTGTAAGTATGTTGATTTTCTTCTT GGCCTGGTAGAGTGTCTGACACGAGTTTTGGGGAAGGTGTTGTGGTTGAGGTGTAGGTTGATGGTGTGTTGGAGGAGGAA TACTGCTTTGGGTGGGCAAAGAGATAGCAGAATTAGTGGTGGAATCAATGGTATGGTGAGCCGAATTAAAAGGAAAAATG GAAACCACATTTCGAGACAAAGGTCTCTGTTGTTTTCGTGTCAAGCTATATTAAACCTTTTGTGCCATGCTTGAAGCCCA AGAAGATGCAATTCTTGGCTCCAGGATTGGGTTTGGTTCTGATATAATAGAGTAGAAGCCAAATGTAATGAGCCAAAGAC CTTGACATAGGTTAAGTCGATTCAAGGGGTTTTCCATGTAAGACCTCATGTGGACTTTTATTGTCTAAGACGGAAGTGTT TAGTTTTTTTATGACGGAAGCTGTGTGGTTCACAGAATAGGACCTGAAATACTTAAAAACACTTTAGTAGGCTGCCTTGG CACAATTGATTAGCAGTATTGAGGTTTTTGATGTTTTCTTTTGACAATAGCTTTGTACTAGGAAGTTTTAAAACAGGAGG TTTTGTGAAACACTACTAAAGATGTATAAAACTGATCTATGGAAACTTTTGGGCCATCATTAGTTCAAATTATCTAAATT GAAGTACCAAATTGGTCTTCACGAGAGAGGAGAAATTCTGAATCAAGGGTCGAACTTCAGACACTGTTTTTATCAAATAG ACCCAAGTGCACCTAGAATAATAATCAGCAGTTGTAATAAAGTAATTATGACCAGAACCATGGTGTTGCGATGTTGCTAA AAAGGGAAGATTGGATCCTTTGCTTCTGGCTCCGCAATGCTGCCGTCAATGAAACCCAGCTTGTAGTTGGTCAACAAGCT CATCTTCAGCAAACGAGATCAGCTGCAATGATGTGTTAGAGAGCAGGAAAAACTATAACCATAGAAAGGGTTTTTACTTG AATCATGAATGAGTGTAGAAGGGATATGAAGGATCTTGATCATCCTCCACTATATATAGACAAGGTTTCGCCATGGAAGA GCACCTTCAAAAAAATTCAAATATGTATAGACACTTTGATATCAAAGTGAAGATGGCAAGCAAAAAGTGTGTTTCCATTG AATGAAATAACACACATTCAGGCGTCTGAGATGAACTAATATAACTTAATACTAAGCAAATGTTGTAACAAACACAACTG CTAACTGAAACTTTTTTTCTGTTCTTCCACCTGTTCCAGTTCCCTTTCTTCCACGAAACACAAATTTCATACTTAGTTTT TTTATTATGTCAGGCATTGGTTATAATGGATTTCCAAGGGGTTGTTCTGATGACAAGCTACCCTGGGCCAAGGTTGGTAT TTAAGGGAGGCGTTAGTTTTTCCATTATCATCTAAAGATTCTCATTCAAAAAACTTGTTATATATTTCAGAAATCTAGGA CTGGAAATCCTTTGGAGACTAAGTACCCGTAAGTATTTTGCTTTCATGTGTTACCTCAAGTATGCTTTGATTTCAAAGAG ATGCATTCTCATCTATCCTGTATCCTCTGTGACTTAATAATGTTCCTGCTCAAGTCTTTATATTTTTCGTTAAACAAGAT CTCGTTGATGATGCTTTTTTTTGTCTATTTTAGTTATGTTTGTCATGCAGAAGTAAATGCTATTCTTAACACAAATCATG CCTCAGCTGCTGGACAAGTGAGTTCCTTTGCTCTCTCTAGTTAACATACTATTTACGCCTCTCAGTCGGTTAAAAATATC GCAGCTTCAGGGGATTATTTTCACTTATGATTTATTTATCATTTTCCTCTCGTAACTTCCACCTTGACTATATCATTGTC CACTTAGCACATGCAAGAAATTTCTTTGAGATTCCCTAAAACAGTTTTTCCCTCCTTTACCACCTAATTACTAAGAGATT CCTAATTTTTTTTTCTTCTTTTTTCCTTTGTTTAATCCATGCAGCGGCTATATGTGACCATGTTTCCTTGCAATGAATGT GCTAAGATCATAATCCAGGTTGGTGGCCTTGTTCTGCATGATGAATACTGTAATATGTTTGATGATCTGTTTTGCAGGTG AAATCTGAATTTTTAAACCCAGCCATAAGATATAGAATGCAGAGATAGTGCACTGTGTTAGTGAAATAGAATATATCACC TCATTTATGCAAGTTTCTCCTATGAGATTTATCATTCATGCTGAATCAGTTTTCATTTACAACTGTTCTATTTTGTCATT GCTCAATACTACTGCAGGCTGTTTTATATTATAAGTGCCTTTTAGTGAAAAGTTAATGGAAGTTGTAATTTTTTGTGAGC TCTGTATTAGCTGATAATCATGTTTAATCCTGGTCTGGTTTATATAAGTTTTGAAGAATCTAAAACACTACAACCACTTG TATATGCTACGGGGCATCTTTATGTTTTGTTTGCATTATGTATCTCTATTCTTTGTTGCAGTCAGGAGTTTCCGAAGTCA TTTATTTTGTGGAGAAGAGATTAGATAATCCAGATATTGCATATATTGCCTCTCACAAGCTACTTTCATTGGCTGGTGTT AAGGTAGCCTTAACAAAATTTTCGGGACGTATATTATTGTCATTGAATTCAGTTGGCTCAGGGATACTTACTACTGATAT TCATTCAATATAATTAACTTCTTCGTATGTTGGTTTCTTATTTTAGTTTCATATCTCTAGCTAATCTCTTGAATGTAACT TAGATGTAAATCTTTCCTCAATATGCAGGTCAGGAAACATCAACCACTGATGAATGAAATTCATCTGAAGTTTGACGAGC ACTAGATTTTGAAACTTGGCGTGATTTTTTGGCCTTTGTAGTCACCATCACCAGGGTTACTGAAAGATGATGGCTCTATA AGTTGGAGCGCTGAACCAAAGCGGTACTCAATCACTCACAGAGAACACACAGTTAGAGAGCAATAGAGATGAGACTTGAG AGAATAGTAGTGGCACACACTTATAGAATGGTAGTGGCTCACACTTATCTAATTTCATTGAATGATAGAACCTATTTAGA CAATAATCTTCAACTGACTAACAGTCATGACAACTAACTATTTAACTAAGACTAAACTGAATTATCACAATTCAACACTA TATTCTGAATATTGCAGAGGAGTTCCTATAGTTGAATCTCTCTGCAAAACAGTCGTAAAACGTTTTGGCCCTTCATTGCC TCTTGTGGACTCTTGCGAAACTGAATGAAACCTTAAAT
CDS sequence (LotjaGi4g1v0221700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAACTCTCGGGAAGCTACTCTGGTGGCGACGGCAACTGCGTTTGGTGCCTTGGCCTCCGCCATCGCTCTCCGCTTCTT CTTCAACCGTTCCCGACGGCAACCATCCAGAACCAATTTCTCGCAAAACGGCACCGTTTCCACTCCTCCGGACCCTTTCG ACCCCTCCAGGCGCCATGGGTACTTGTCGTGGGATGATTATTTCATGGCAATTGCATTTTTGTCAGCTGAAAGATCCAAA GACCCTAACAGGCAGGTGGGGGCTTGTTTGGTGAGTCAAGATGGTATAATTCTTGGCATTGGTTATAATGGATTTCCAAG GGGTTGTTCTGATGACAAGCTACCCTGGGCCAAGAAATCTAGGACTGGAAATCCTTTGGAGACTAAGTACCCTTATGTTT GTCATGCAGAAGTAAATGCTATTCTTAACACAAATCATGCCTCAGCTGCTGGACAACGGCTATATGTGACCATGTTTCCT TGCAATGAATGTGCTAAGATCATAATCCAGTCAGGAGTTTCCGAAGTCATTTATTTTGTGGAGAAGAGATTAGATAATCC AGATATTGCATATATTGCCTCTCACAAGCTACTTTCATTGGCTGGTGTTAAGGTCAGGAAACATCAACCACTGATGAATG AAATTCATCTGAAGTTTGACGAGCACTAG
Protein sequence (LotjaGi4g1v0221700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNSREATLVATATAFGALASAIALRFFFNRSRRQPSRTNFSQNGTVSTPPDPFDPSRRHGYLSWDDYFMAIAFLSAERSK DPNRQVGACLVSQDGIILGIGYNGFPRGCSDDKLPWAKKSRTGNPLETKYPYVCHAEVNAILNTNHASAAGQRLYVTMFP CNECAKIIIQSGVSEVIYFVEKRLDNPDIAYIASHKLLSLAGVKVRKHQPLMNEIHLKFDEH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 23 | 23 | - | – | |
| PANTHER | 1 | 222 | 222 | 1.0E-134 | ||
| Phobius | 1 | 6 | 6 | - | – | |
| PANTHER | 1 | 222 | 222 | 1.0E-134 | – | |
| TMHMM | 6 | 28 | 23 | - | – | |
| Phobius | 7 | 18 | 12 | - | – | |
| Phobius | 19 | 23 | 5 | - | – | |
| Phobius | 24 | 222 | 199 | - | – | |
| MobiDBLite | 35 | 55 | 21 | - | – | |
| MobiDBLite | 35 | 50 | 16 | - | – | |
| Gene3D | 54 | 222 | 169 | 4.1E-58 | – | |
| ProSiteProfiles | 63 | 205 | 143 | 23.7 | ||
| Pfam | 63 | 179 | 117 | 2.5E-25 | ||
| SUPERFAMILY | 65 | 211 | 147 | 5.02E-35 | ||
| CDD | 65 | 194 | 130 | 7.17429E-54 | ||
| ProSitePatterns | 135 | 168 | 34 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. | ||
| Molecular function | Hydrolase activity | Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. |
Expression pattern of LotjaGi4g1v0221700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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