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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0228300 |
| Transcript ID | LotjaGi4g1v0228300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT3G48250.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9STK5|PP269_ARATH Pentatricopeptide repeat-containing protein At3g48250, chloroplastic; TrEMBL-Plants: tr|I1MTC3|I1MTC3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0228300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:53803546..53806670) extracted from Lotus japonicus Gifu genome v1.2.
AAAATTTGTTGATGATGGGCATGAAATGAAACTACCACAATACTTCAATCGGGTCATCCAGTCGGGTTATGGAATACCCG CACTCTAGATCCATACCCGCAAAACCAGTCGTTAAACCCTTCCAAAATCTACATCTTCGTTGCGCAGCGATTTTCCTCTT CTCTTCCAATACTCCACCGTCTCCGCCGCGCAGCGATGATCCGCGTGAAGGCAATAGCAGTAGCCACCTCCCTCCGATTC CTCAACTCGTCACTCGCCACCCGAGTCCTCGCAACTCGGAACCAGGTGACTCACTTCTCTTCCTACACTCCACAACCCCT TCTGGGTCGCTCTCACGATTTGCGTTTTCCCTACACTCACCATAGAATCTACTTCTCTTCCAAACCCACCTCCATTTTGG AGCTTGTTCTCACCAACGATTGGTCCCAAGGGGTTGAGCAAGAGTTAGAAAAGTGTTCACCGTCTTTGACCCATGAAACT GTTCTCTTCGTTTTGAAGCGATTGGACAAAAACCCAGAAAAAGCTTCGTCGTTTTTCAACTGGGTCAGTGAGAAAGAGTG GTTCAGGGCAAGTTCTACTGTGTATAGTTTGATTGCTAGGATCTTGGCGAATAAGGAGACGATGAAGCAGTTTTGGGTTA CTCTGAGGATGATGAAGGAGAAAGGGTTTTACCTCGATGAAGAGACGTATTATACAATTTCAGTTGGGTTTAAGAGGGCA AAGATGAACAGTGATTCTGCAGCTCTTACTCATTTCTACAATAGGATGCTTGAGGATAATACTACACAAAGTGTTGTCAC CAAGGTGGTTGGTATTGTGTCAGGGTCTGAGGGGGGTGATGATGGTGAGGTTAAGAATGAGTTGGCGAAGCTCGAGATTC AACTGTCTGATAATTTTGTGATCAGGGTTATGAAAGAGCTTCGAAGAAGCCCTTTAAAGGCTTACACATTCTTTAAGTGG GTTGGGGAGCAATCTGATTATGAGCATAATACAGTGACTTTCAATGCGATTGCGAGAGTTCTTGCGAGGTCTGATTCGAT TGAGGAGTTTTGGAGTGTTATTGAGGAGATGAAGGGGCTGGGTCATGAATTGGACATTGATACCTACATAAAGGTATCGA GGCAGCTTCAGAAATTTAGGATGATGGAGGATGCTGTCAAGCTTTATGAGCTTATGATGGATGGTTCATATAAGCCATCT GTTCAGGATTGCTATATGCTTTTAAAGAACATTTCTGGCGATGATAAGCCAAATTTGGATTTAGTTTTCAGGGTCGCTAA GAAATACGAGTCGGCAGGGCATACTCTCTCCAAGGCAATCTATGATGGGATCCACAGGTCTTTGACACGTTCTGGGAAAT TTGATGAAGCTGAAAATATTGTTAACACTATGAGAAATGCTGGCTATGAGCCTGATAACATCACCTACAGTCAAGTGGTT TTTGGACTTTGTAAGGCGGGAAGGCTTGAAGAAGCATGTGAGGTGCTGGAGGAGATGGAATCTTGTGGATGTATCCCTGA TATCAAGACTTGGACCATCTTGATCAAAGGGCACTGTGATGCAAATGAAGTAGATCAGGCATTGGTTTATTTTACTAAGA TGATTGAAAAGGGCTGTGATGCAGATGCTGATCTGTTGGATGTTCTGGTTGAAGGGTTTCTCAATCAACAGAGAATAGAT GGTGCATACAAGTTAATGGTTGAGATAAGTAATAACTGTCGTATATCTCCGTGGCAAGCTACGTATAAGAAAATAATTGA AAGGCTTTTAGGAATCAGAAAGTTTGAGGAGGGACTTGACCTTCTTCGCATGATGAAGAGCCACAACTTCCCTCCATACC ATGAACCTTTTGTGTCATATGTTTCAAAGTTCGGGAGCGTGGATGACACTGCAGAGTTCCTGAAGGCATTAAGTGTGAAA AATTACCCATCTCTTTCATCGTACCTTCAGGTTTTTGAAGCCTTCTTCCAAGAAGGTAGATTATCTGAGGCCAAAGATCT ATTATACAAGTGTCCTCACCATATACGCAATCATAGTAAAATCTGTGAACTTTTTGGTTCACCTGAGAGTGGCATCGCCG CTACTTGACCCCTGGAATTTTTCTTTTTTAGCCTTGTCATCAGTAGCATGTTTTTCATCTTTCTTCAAATGATTAATGTT ATCAACTGTTAGGTGGATTTGGTCTTTGCCCGTTTGAAAAACAATTGGACATAAGGTATTATGGTAAGTTAAGCTTCATT CTTGAAAGTGTAAGAAATTTTCGTGTGTGACTAGTAATGTTACCATTCATATTTATGTTTTTAAAAGATTTACACATTCC AGCTTTTATATTTTTCCAAAGGAGATGATGGATGTTCATGCTTGACAATTCATGACATACCTGTACGCTGCAAATCCCAA GTACAAGTTCCCTTTTTCATTTTTCATTATGTTTTCCTGAATTTGGAGCTTCATCTTTCCTGGCATATGTTATGTACCCT TCAATAGGAACTCCATTATTTTTGCTATCTAAGAACAGTGCATCTTTTTTACTTTTTTGGGGTAGCTTCAACTTGCTCCT TAGGAATTGTGTAGGTTGGTTGGCGATGTTCCTTGTATTCTTTTGCTGAGGATTGTAAATTGGCTGAGTTGAGACTATGT TTTTGAATCTCTCCTCTGATTGTTGGATCATGGATGTACTGCAACAAAGTCAGTTGATTCAACTTGGAATGTTGTTGAAC CCTCTATGTCTGAATATAGTTCATCTTTGTTTGTCTCCTCGAGAGAAGGTTATTTATGCCTATCTTGCATGAAGCCTGGA CACTCCATTGGATTTGGGGTGATCTATATACATTTTGATTATGATACGCATGAAGGTCTTAACAGCAAATATGGGGTAAC CGACATGCTAAACTTGTTGAACAGGTCTTGCAAACTGGGTCATTAGTTGAGTTCGAGCTTGTATGTGAGTCACAGGAAAA AGAACGAATGTGCCTAAAGTAACTATAATTAAGGTTTCCAAATATTAGAACCCTAATCCCAACAATGATAAAAAAAATTC GTTGGCTACAGAGATGAGTATTTTAAATCTACAATATCGTTCCCACAGGGGTCAATGTCAAAAACAAGAGCTTACTAGCT TAGGG
CDS sequence (LotjaGi4g1v0228300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATCCGCGTGAAGGCAATAGCAGTAGCCACCTCCCTCCGATTCCTCAACTCGTCACTCGCCACCCGAGTCCTCGCAAC TCGGAACCAGGTGACTCACTTCTCTTCCTACACTCCACAACCCCTTCTGGGTCGCTCTCACGATTTGCGTTTTCCCTACA CTCACCATAGAATCTACTTCTCTTCCAAACCCACCTCCATTTTGGAGCTTGTTCTCACCAACGATTGGTCCCAAGGGGTT GAGCAAGAGTTAGAAAAGTGTTCACCGTCTTTGACCCATGAAACTGTTCTCTTCGTTTTGAAGCGATTGGACAAAAACCC AGAAAAAGCTTCGTCGTTTTTCAACTGGGTCAGTGAGAAAGAGTGGTTCAGGGCAAGTTCTACTGTGTATAGTTTGATTG CTAGGATCTTGGCGAATAAGGAGACGATGAAGCAGTTTTGGGTTACTCTGAGGATGATGAAGGAGAAAGGGTTTTACCTC GATGAAGAGACGTATTATACAATTTCAGTTGGGTTTAAGAGGGCAAAGATGAACAGTGATTCTGCAGCTCTTACTCATTT CTACAATAGGATGCTTGAGGATAATACTACACAAAGTGTTGTCACCAAGGTGGTTGGTATTGTGTCAGGGTCTGAGGGGG GTGATGATGGTGAGGTTAAGAATGAGTTGGCGAAGCTCGAGATTCAACTGTCTGATAATTTTGTGATCAGGGTTATGAAA GAGCTTCGAAGAAGCCCTTTAAAGGCTTACACATTCTTTAAGTGGGTTGGGGAGCAATCTGATTATGAGCATAATACAGT GACTTTCAATGCGATTGCGAGAGTTCTTGCGAGGTCTGATTCGATTGAGGAGTTTTGGAGTGTTATTGAGGAGATGAAGG GGCTGGGTCATGAATTGGACATTGATACCTACATAAAGGTATCGAGGCAGCTTCAGAAATTTAGGATGATGGAGGATGCT GTCAAGCTTTATGAGCTTATGATGGATGGTTCATATAAGCCATCTGTTCAGGATTGCTATATGCTTTTAAAGAACATTTC TGGCGATGATAAGCCAAATTTGGATTTAGTTTTCAGGGTCGCTAAGAAATACGAGTCGGCAGGGCATACTCTCTCCAAGG CAATCTATGATGGGATCCACAGGTCTTTGACACGTTCTGGGAAATTTGATGAAGCTGAAAATATTGTTAACACTATGAGA AATGCTGGCTATGAGCCTGATAACATCACCTACAGTCAAGTGGTTTTTGGACTTTGTAAGGCGGGAAGGCTTGAAGAAGC ATGTGAGGTGCTGGAGGAGATGGAATCTTGTGGATGTATCCCTGATATCAAGACTTGGACCATCTTGATCAAAGGGCACT GTGATGCAAATGAAGTAGATCAGGCATTGGTTTATTTTACTAAGATGATTGAAAAGGGCTGTGATGCAGATGCTGATCTG TTGGATGTTCTGGTTGAAGGGTTTCTCAATCAACAGAGAATAGATGGTGCATACAAGTTAATGGTTGAGATAAGTAATAA CTGTCGTATATCTCCGTGGCAAGCTACGTATAAGAAAATAATTGAAAGGCTTTTAGGAATCAGAAAGTTTGAGGAGGGAC TTGACCTTCTTCGCATGATGAAGAGCCACAACTTCCCTCCATACCATGAACCTTTTGTGTCATATGTTTCAAAGTTCGGG AGCGTGGATGACACTGCAGAGTTCCTGAAGGCATTAAGTGTGAAAAATTACCCATCTCTTTCATCGTACCTTCAGGTTTT TGAAGCCTTCTTCCAAGAAGGTAGATTATCTGAGGCCAAAGATCTATTATACAAGTGTCCTCACCATATACGCAATCATA GTAAAATCTGTGAACTTTTTGGTTCACCTGAGAGTGGCATCGCCGCTACTTGA
Protein sequence (LotjaGi4g1v0228300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIRVKAIAVATSLRFLNSSLATRVLATRNQVTHFSSYTPQPLLGRSHDLRFPYTHHRIYFSSKPTSILELVLTNDWSQGV EQELEKCSPSLTHETVLFVLKRLDKNPEKASSFFNWVSEKEWFRASSTVYSLIARILANKETMKQFWVTLRMMKEKGFYL DEETYYTISVGFKRAKMNSDSAALTHFYNRMLEDNTTQSVVTKVVGIVSGSEGGDDGEVKNELAKLEIQLSDNFVIRVMK ELRRSPLKAYTFFKWVGEQSDYEHNTVTFNAIARVLARSDSIEEFWSVIEEMKGLGHELDIDTYIKVSRQLQKFRMMEDA VKLYELMMDGSYKPSVQDCYMLLKNISGDDKPNLDLVFRVAKKYESAGHTLSKAIYDGIHRSLTRSGKFDEAENIVNTMR NAGYEPDNITYSQVVFGLCKAGRLEEACEVLEEMESCGCIPDIKTWTILIKGHCDANEVDQALVYFTKMIEKGCDADADL LDVLVEGFLNQQRIDGAYKLMVEISNNCRISPWQATYKKIIERLLGIRKFEEGLDLLRMMKSHNFPPYHEPFVSYVSKFG SVDDTAEFLKALSVKNYPSLSSYLQVFEAFFQEGRLSEAKDLLYKCPHHIRNHSKICELFGSPESGIAAT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| Phobius | 1 | 21 | 21 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 21 | 21 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 26 | 26 | - | – | |
| Phobius | 6 | 16 | 11 | - | – | |
| PANTHER | 7 | 625 | 619 | 0.0 | – | |
| PANTHER | 7 | 625 | 619 | 0.0 | – | |
| Phobius | 17 | 21 | 5 | - | – | |
| Phobius | 22 | 630 | 609 | - | – | |
| Gene3D | 73 | 207 | 135 | 4.0E-8 | ||
| ProSiteProfiles | 126 | 160 | 35 | 6.259 | ||
| ProSiteProfiles | 161 | 198 | 38 | 5.031 | ||
| Gene3D | 218 | 353 | 136 | 3.2E-16 | ||
| ProSiteProfiles | 265 | 299 | 35 | 9.35 | ||
| TIGRFAM | 267 | 300 | 34 | 3.7E-4 | ||
| Pfam | 267 | 296 | 30 | 0.059 | ||
| ProSiteProfiles | 300 | 334 | 35 | 8.353 | ||
| Gene3D | 370 | 524 | 155 | 2.4E-33 | ||
| ProSiteProfiles | 372 | 406 | 35 | 9.591 | ||
| TIGRFAM | 381 | 407 | 27 | 0.0021 | ||
| Pfam | 403 | 435 | 33 | 2.4E-12 | ||
| ProSiteProfiles | 407 | 441 | 35 | 13.132 | ||
| TIGRFAM | 409 | 443 | 35 | 5.8E-10 | ||
| Pfam | 438 | 469 | 32 | 4.8E-7 | ||
| ProSiteProfiles | 442 | 476 | 35 | 11.06 | ||
| TIGRFAM | 445 | 477 | 33 | 3.0E-7 | ||
| ProSiteProfiles | 477 | 512 | 36 | 5.788 | ||
| ProSiteProfiles | 513 | 547 | 35 | 8.1 | ||
| ProSiteProfiles | 579 | 609 | 31 | 5.7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0228300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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