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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0235100 |
| Transcript ID | LotjaGi4g1v0235100.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING-finger ubiquitin ligase; TAIR: AT3G47990.1 SUGAR-INSENSITIVE 3; Swiss-Prot: sp|Q8GYT9|SIS3_ARATH E3 ubiquitin-protein ligase SIS3; TrEMBL-Plants: tr|A0A072UPV9|A0A072UPV9_MEDTR RING-finger ubiquitin ligase; Found in the gene: LotjaGi4g1v0235100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:54922026..54926587) extracted from Lotus japonicus Gifu genome v1.2.
GTCGAAAACGCAAAAGCAAACGTAGGCACTAGACTCACACACGCAGTGAGTGACACTTGAGGTAAATGTCGTGAATGAAG TAGTAAATGCGCAAGTGTATGCAACACACGCACACAAACACAAACACAAACACAAACAAAACACAGTGAGGTCAATCAAT GTCTTTGGCGGTGCGGTGTGTATTGTAATTTTGTGTTAGTTCATCCTCTCTTACTTTCAAGTTTCAACAACTCTTAACAG TTAACCCCCACAAATTTCGTGTCCTTTTTCTTCCAATTTCTGCTCCACCTTCCTCTACTTCACTCTCTTTTCTACATTTT GCACTTCGATTCCGATCCGATGATGCATGCTTAAGAACCACGATTCTTCAATACGACACCGCTTCTTTTTTCTTCTAGGG TTTCCTTCATGGCTATCAGAGGCGTCGATTTCAAGTGGTTCGTTCCCTTTCTCTGATACACTGATTGTTGTTACATCCCA ATTTTGATTCAATTTAACTCGCTCAATTTCAGGTACGATGGGTTTTTCTTGTCCATGCTCGCAACCAGTGTGTATCCTTT TACAATTCACCTTCTGGGTTTTCGTAATCATTCTGCATTTTCAATCTCCATGTTATTCCTTTGTTGTTTCATCCTCTTCT AACTTCATCTGAACCAGTTGTGAATTTTAAGCATGAAATGTGTTTGCATGTGTTCTTTGACTACTGGATTTGCAGAGTTA TTGTTGCAATGAATTGGAAGCGTTACCATTCTTGTACATACCCTTTGCACATATGGATTGTGGTGGGTTTCCTTTAATTG TATTAATTAATTCTAGCTTTTCAGAATCTATGGTGGTTATTTGTTTCTATTTTCTTCATTAAGATGAGATTGTCATGTAA ATGAATGATCCCTTTTGTTTTAGTACTGAAAAAATGACTCCTCTTATTTTTCTTGCACGATCCAGGTGGACTACACTACT GTGTTTGTTTTGAGGCTCTTGATGTTTGTGGATAATGGGCTTGCTGCGGGAATGGGATTGTAAGGCTTTCTATCCTTAGA CTTTTGATGTAATTGTTAACTATATTTAAGTTGTTTTCTTCATTTTATAGTAGGTGTATAGAGTGAATGGCACTATATTA TGGTTAAAAGTGAAAATGACACTATGGAAGAGATTGGCTTAAAAGTTTTTAGAGAATATAAATGGACTATGGTCAATGTA GCTGGTGGTTTAATGAAAAGGTACATCTCTTAAGTGAAATTCTGGAAAATAACAGTTTCCGGATGGGGTTAATTTCACTT AATTATTCATGGCTGTTCAGCATTCAAGTGCAAAATTAGTTATGGTCATTTTCCTTTCATGGTTGACTTCTTTGGTTTCA CTATAGCAACATCGACTACGCTGGTTCTGAATTTTTTGTATTGCGTTGAAAAAATGAGTCAAATGATGTTTTAATTTGTC GAATCCCTTTGTTAATTCAGTTGGACTTAATCCCTCCCTCTCCTTTTTCTATGCTTTTAGAGATTTTGGGTGGCAGCAGA GGTATGCTCGTTTCTGTGGAAGAGTAGTAGTCCTTTCAGTCCTTGCATTGCTTCTCTATCCATTTCTTTGGGCTTGGACT ATTATTGGTACCCTGTGGTTTAGCAGTTCCAAGAACTGTGTATGTTATTTTTATTTTTATTTAATCTTCACTCTTAAGTG CTACTCTAATTAACAAGCTTATGATGCATGACACAAATTTTTACCCGCAGTTGCCTGAACAGGGTCAGAAATGGGCCTTC CTCATCTGGTTGCTTTTTAGCTACTGTGGACTCTTTTGCATTGCTTGCATCTCACTTGGGAAGGTTACGTTGCTCTATTA ATCGTTACTCATTAGATGTTTCTTTGACATTTTTCCATGTGTAAAATCTGTTTTCATTCCACTTGTCATTATGTTCTTGT TTCTGGACAGCCTACAACAGGGAAATAGGGAAATAGTTTTCATTCCATGTGCAAAACTATTCTCATTCATTATTTCTCAT ATAGGTGGGTTTTGCTCTCATTTTAGTTTAACACTTTGCAGTGGTGGACACGGAGACAAGCACACTTATTGCGGGCCCAA CAGGGTATCCCTGTATCTGAATACGGGGTAAGCTTTAATTTAACCGTGGTATAGGTGTCAGCACTTGTTGTGTGTTTTGG AAATTCCATCTTTTGACAGCTTGATACTGCTATTTGCATCAAATAGGAGTATTTCTGAACTTTCCATAATGACATGGAAA GATTTTTCCTTAGTTTTTCCTCAAGTTAAGGGTAGATCGTAGGAACCCTATATTAAGTTTTATCTTGAAATTGAAGTTAG TGCGGTAAATTCTATGTTGACATTTGGTATAACTTGTAGTCTAACATTGTATTGAAGCTACTAAGCTTGCTCATATGCTG GTTCAATTCTCTCTAATAAACATATTGTTAAAGTTTGAGTCTATGTTGCTCCATTCTCATTTTAGTTCTGTTTTGATTTT CTGAACCATGTCCAACTTCCATTTTATGAAGTTAAACTACTCTAGCAATTGTGTACCCAGCAAACTGTCCTGTTGGGGAC TGCTAACTGACATGATAGGCTGGTTGTTTTTTTATCTATCCTTGTATAACAATACTATGATGCACTGTTATTGAGACGTA GTCCCTTGTGTGTGGTAGAAAAATTTGCATGTGGTTGTGATTTGTAAGTTGTAACCTCCCAACTCTCACCTCCCACCCCC TTCTTTTTCCTTTTTATCCCTCCCCAAAGTTACCAATATCCACAGGTGTCATGAATCAAACGAAAACTAAATATCCTCCA TCACTTCTGTGGGATTGGCAGAAAGTTTTTAACAACAATTGCACTGAGCTCTTACTGCTGGGCTCTTTCTGGAGTCAATA TGATTAGTAGATCACTGTATTACTGCCTAAGGGATTGATTGAAATACGATCTGTAATCATATTATTGTATACACATTTCA GTTTGATTATAGCCATACTTGAAAACAGATGATAACAATTGCTATTTTCATTTTGGTAGGTTCTGGTTGATATGATCCGC GTTCCTGATTGGGCATTTGAAGCTGCAGGTCAAGAAACAAGAGTCATGGCCCAAGATGCTGCCACATATCAACCAGGACT TTACTTAACTCCAGCTCAGGTTGTTCTAGCTGATTTTTGTAGACCTTGATTTCATAGATCTAATATGAAGTAGTTGAACA TGTTATTCTTTGTCAATCTGAGTTAACTTTATTGTCACATACATTAGCTAATGAAATTTATTGCTTGAATTCTCTCATGA ATTATTCATATCGTTCTAGTTTGTTCGGACAATATATTGGTCATTATTATTGTCATATTTATCTCTCTTCAAAACTTTTT TTTTGTTTGTTTACAGTTTATTTTTAGTTTCACTACTGATAGTAGGGTTTCTTGTCTGGGTTGGACGCAGAGAGAAGCAG TTGAAGCTTTAATTCAGGAACTCCCAAAGTTCAGGTTAAAGGCTGTTCCTACTGATTGCAGTGAATGTCCCGTCTGCTTA GAAGAGTTCCATGAAGGGAATGAGGTATACTTTTTCAGGGTCTAAACCAAGCCATTTTGTATGCTGTACAGTTCATTACT GAAAAATGTGCTCTTTGTCAAACCTAATGAATTCTTGGAATCCTGCACTTGAGATGGTTGAGATGCATTGTTTAGATTAA TTGAAAATTATAGTTTCTAACTTACAGTAATGCAGGTCCGTGGCTTGCCTTGCGCTCACAATTTTCATGTTGAATGCATT GATGAGTGGCTTAGGCTGAATGTGAAATGTCCTCGGTGCCGATGCTCGGTGTTTCCAAATCTTGATCTCAGTGCCCTGTC CAACCTCCGTGCTGATTCCGAACGTTCGCCTGCGAGTGTTATGACAACAACCAGATATGTGAGAGGCCAACCTGCTAGTC AAAGTTACCGGTTACGATTACAGGGTCTTCTCCGCCCAGTGCGTGCTGAAGTTGCAGGGCCAGTTGGTGACACCGATGAT GCTTTGGATAATGCTGAGAACGGAGCTGTACCTGTCGGGAGTCGAAATGCATCAACTAGAGAGCAGGTCTCTTCTGTTGA ATGCATGCCTGTGAGTGTTTCCTCTGCACAAAGTTAAACTACATGGTTTCGGAACTTGTTATATTTCTAACCCATTATAG AAAAGTTGAACTTCTGTTATCCATATATGGCCTTGTAAAAGTGGTGCACATTCTAACATGAAATTTTCATATTGGTCCAT GAAGAAATGGATCAGTTTCTTGTCTTGGGCATCTTGGAGTAGTAGGAATTGGGAAATCATAGTATACCTTTTTGCTTAAC TAACATATTAGCTCTGTAGATGTGTAATTGCCTTTCTTATTTTGGTCGTGTATATTAATTCTGAAGCGTGAATTGTAGAG TTTTCATCTCAATGGATTTTTCAAGGAGTTATCTCGCTTTGTTGTCACCATGAGGCAATTAACATTTCAAGATTCTTTCA TCTTCTAATAACTCTGATATTAATTATAATCTAATACTATTTTAGTAATAATAATAATTAGGCTATAAGTAAACATAGGC AC
CDS sequence (LotjaGi4g1v0235100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTATCAGAGGCGTCGATTTCAAGTGGTACGATGGGTTTTTCTTGTCCATGCTCGCAACCAGTGTAGTTATTGTTGC AATGAATTGGAAGCGTTACCATTCTTGTACATACCCTTTGCACATATGGATTGTGGTGGACTACACTACTGTGTTTGTTT TGAGGCTCTTGATGTTTGTGGATAATGGGCTTGCTGCGGGAATGGGATTAGATTTTGGGTGGCAGCAGAGGTATGCTCGT TTCTGTGGAAGAGTAGTAGTCCTTTCAGTCCTTGCATTGCTTCTCTATCCATTTCTTTGGGCTTGGACTATTATTGGTAC CCTGTGGTTTAGCAGTTCCAAGAACTGTTTGCCTGAACAGGGTCAGAAATGGGCCTTCCTCATCTGGTTGCTTTTTAGCT ACTGTGGACTCTTTTGCATTGCTTGCATCTCACTTGGGAAGTGGTGGACACGGAGACAAGCACACTTATTGCGGGCCCAA CAGGGTATCCCTGTATCTGAATACGGGGTTCTGGTTGATATGATCCGCGTTCCTGATTGGGCATTTGAAGCTGCAGGTCA AGAAACAAGAGTCATGGCCCAAGATGCTGCCACATATCAACCAGGACTTTACTTAACTCCAGCTCAGAGAGAAGCAGTTG AAGCTTTAATTCAGGAACTCCCAAAGTTCAGGTTAAAGGCTGTTCCTACTGATTGCAGTGAATGTCCCGTCTGCTTAGAA GAGTTCCATGAAGGGAATGAGGTCCGTGGCTTGCCTTGCGCTCACAATTTTCATGTTGAATGCATTGATGAGTGGCTTAG GCTGAATGTGAAATGTCCTCGGTGCCGATGCTCGGTGTTTCCAAATCTTGATCTCAGTGCCCTGTCCAACCTCCGTGCTG ATTCCGAACGTTCGCCTGCGAGTGTTATGACAACAACCAGATATGTGAGAGGCCAACCTGCTAGTCAAAGTTACCGGTTA CGATTACAGGGTCTTCTCCGCCCAGTGCGTGCTGAAGTTGCAGGGCCAGTTGGTGACACCGATGATGCTTTGGATAATGC TGAGAACGGAGCTGTACCTGTCGGGAGTCGAAATGCATCAACTAGAGAGCAGGTCTCTTCTGTTGAATGCATGCCTGTGA GTGTTTCCTCTGCACAAAGTTAA
Protein sequence (LotjaGi4g1v0235100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAIRGVDFKWYDGFFLSMLATSVVIVAMNWKRYHSCTYPLHIWIVVDYTTVFVLRLLMFVDNGLAAGMGLDFGWQQRYAR FCGRVVVLSVLALLLYPFLWAWTIIGTLWFSSSKNCLPEQGQKWAFLIWLLFSYCGLFCIACISLGKWWTRRQAHLLRAQ QGIPVSEYGVLVDMIRVPDWAFEAAGQETRVMAQDAATYQPGLYLTPAQREAVEALIQELPKFRLKAVPTDCSECPVCLE EFHEGNEVRGLPCAHNFHVECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRADSERSPASVMTTTRYVRGQPASQSYRL RLQGLLRPVRAEVAGPVGDTDDALDNAENGAVPVGSRNASTREQVSSVECMPVSVSSAQS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 366 | 366 | 6.7E-216 | – | |
| PANTHER | 1 | 366 | 366 | 6.7E-216 | – | |
| Phobius | 1 | 11 | 11 | - | – | |
| Phobius | 12 | 30 | 19 | - | – | |
| TMHMM | 13 | 30 | 18 | - | – | |
| Phobius | 31 | 41 | 11 | - | – | |
| TMHMM | 40 | 59 | 20 | - | – | |
| Phobius | 42 | 60 | 19 | - | – | |
| Phobius | 61 | 80 | 20 | - | – | |
| Phobius | 81 | 105 | 25 | - | – | |
| TMHMM | 87 | 109 | 23 | - | – | |
| Phobius | 106 | 124 | 19 | - | – | |
| TMHMM | 124 | 146 | 23 | - | – | |
| Phobius | 125 | 149 | 25 | - | – | |
| Phobius | 150 | 380 | 231 | - | – | |
| Gene3D | 204 | 281 | 78 | 1.7E-18 | ||
| SUPERFAMILY | 217 | 284 | 68 | 1.27E-20 | – | |
| CDD | 234 | 278 | 45 | 2.90206E-18 | – | |
| Pfam | 234 | 276 | 43 | 2.9E-13 | ||
| ProSiteProfiles | 235 | 276 | 42 | 13.035 | ||
| SMART | 235 | 275 | 41 | 7.9E-7 | ||
| MobiDBLite | 336 | 363 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0235100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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