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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0235100 |
| Transcript ID | LotjaGi4g1v0235100.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING-finger ubiquitin ligase; TAIR: AT3G47990.1 SUGAR-INSENSITIVE 3; Swiss-Prot: sp|Q8GYT9|SIS3_ARATH E3 ubiquitin-protein ligase SIS3; TrEMBL-Plants: tr|A0A072V189|A0A072V189_MEDTR RING-finger ubiquitin ligase; Found in the gene: LotjaGi4g1v0235100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:54922471..54926173) extracted from Lotus japonicus Gifu genome v1.2.
ATCAGAGGCGTCGATTTCAAGTGGTTCGTTCCCTTTCTCTGATACACTGATTGTTGTTACATCCCAATTTTGATTCAATT TAACTCGCTCAATTTCAGGTACGATGGGTTTTTCTTGTCCATGCTCGCAACCAGTGTGTATCCTTTTACAATTCACCTTC TGGGTTTTCGTAATCATTCTGCATTTTCAATCTCCATGTTATTCCTTTGTTGTTTCATCCTCTTCTAACTTCATCTGAAC CAGTTGTGAATTTTAAGCATGAAATGTGTTTGCATGTGTTCTTTGACTACTGGATTTGCAGAGTTATTGTTGCAATGAAT TGGAAGCGTTACCATTCTTGTACATACCCTTTGCACATATGGATTGTGGTGGGTTTCCTTTAATTGTATTAATTAATTCT AGCTTTTCAGAATCTATGGTGGTTATTTGTTTCTATTTTCTTCATTAAGATGAGATTGTCATGTAAATGAATGATCCCTT TTGTTTTAGTACTGAAAAAATGACTCCTCTTATTTTTCTTGCACGATCCAGGTGGACTACACTACTGTGTTTGTTTTGAG GCTCTTGATGTTTGTGGATAATGGGCTTGCTGCGGGAATGGGATTGTAAGGCTTTCTATCCTTAGACTTTTGATGTAATT GTTAACTATATTTAAGTTGTTTTCTTCATTTTATAGTAGGTGTATAGAGTGAATGGCACTATATTATGGTTAAAAGTGAA AATGACACTATGGAAGAGATTGGCTTAAAAGTTTTTAGAGAATATAAATGGACTATGGTCAATGTAGCTGGTGGTTTAAT GAAAAGGTACATCTCTTAAGTGAAATTCTGGAAAATAACAGTTTCCGGATGGGGTTAATTTCACTTAATTATTCATGGCT GTTCAGCATTCAAGTGCAAAATTAGTTATGGTCATTTTCCTTTCATGGTTGACTTCTTTGGTTTCACTATAGCAACATCG ACTACGCTGGTTCTGAATTTTTTGTATTGCGTTGAAAAAATGAGTCAAATGATGTTTTAATTTGTCGAATCCCTTTGTTA ATTCAGTTGGACTTAATCCCTCCCTCTCCTTTTTCTATGCTTTTAGAGATTTTGGGTGGCAGCAGAGGTATGCTCGTTTC TGTGGAAGAGTAGTAGTCCTTTCAGTCCTTGCATTGCTTCTCTATCCATTTCTTTGGGCTTGGACTATTATTGGTACCCT GTGGTTTAGCAGTTCCAAGAACTGTGTATGTTATTTTTATTTTTATTTAATCTTCACTCTTAAGTGCTACTCTAATTAAC AAGCTTATGATGCATGACACAAATTTTTACCCGCAGTTGCCTGAACAGGGTCAGAAATGGGCCTTCCTCATCTGGTTGCT TTTTAGCTACTGTGGACTCTTTTGCATTGCTTGCATCTCACTTGGGAAGGTTACGTTGCTCTATTAATCGTTACTCATTA GATGTTTCTTTGACATTTTTCCATGTGTAAAATCTGTTTTCATTCCACTTGTCATTATGTTCTTGTTTCTGGACAGCCTA CAACAGGGAAATAGGGAAATAGTTTTCATTCCATGTGCAAAACTATTCTCATTCATTATTTCTCATATAGGTGGGTTTTG CTCTCATTTTAGTTTAACACTTTGCAGTGGTGGACACGGAGACAAGCACACTTATTGCGGGCCCAACAGGGTATCCCTGT ATCTGAATACGGGGTAAGCTTTAATTTAACCGTGGTATAGGTGTCAGCACTTGTTGTGTGTTTTGGAAATTCCATCTTTT GACAGCTTGATACTGCTATTTGCATCAAATAGGAGTATTTCTGAACTTTCCATAATGACATGGAAAGATTTTTCCTTAGT TTTTCCTCAAGTTAAGGGTAGATCGTAGGAACCCTATATTAAGTTTTATCTTGAAATTGAAGTTAGTGCGGTAAATTCTA TGTTGACATTTGGTATAACTTGTAGTCTAACATTGTATTGAAGCTACTAAGCTTGCTCATATGCTGGTTCAATTCTCTCT AATAAACATATTGTTAAAGTTTGAGTCTATGTTGCTCCATTCTCATTTTAGTTCTGTTTTGATTTTCTGAACCATGTCCA ACTTCCATTTTATGAAGTTAAACTACTCTAGCAATTGTGTACCCAGCAAACTGTCCTGTTGGGGACTGCTAACTGACATG ATAGGCTGGTTGTTTTTTTATCTATCCTTGTATAACAATACTATGATGCACTGTTATTGAGACGTAGTCCCTTGTGTGTG GTAGAAAAATTTGCATGTGGTTGTGATTTGTAAGTTGTAACCTCCCAACTCTCACCTCCCACCCCCTTCTTTTTCCTTTT TATCCCTCCCCAAAGTTACCAATATCCACAGGTGTCATGAATCAAACGAAAACTAAATATCCTCCATCACTTCTGTGGGA TTGGCAGAAAGTTTTTAACAACAATTGCACTGAGCTCTTACTGCTGGGCTCTTTCTGGAGTCAATATGATTAGTAGATCA CTGTATTACTGCCTAAGGGATTGATTGAAATACGATCTGTAATCATATTATTGTATACACATTTCAGTTTGATTATAGCC ATACTTGAAAACAGATGATAACAATTGCTATTTTCATTTTGGTAGGTTCTGGTTGATATGATCCGCGTTCCTGATTGGGC ATTTGAAGCTGCAGGTCAAGAAACAAGAGTCATGGCCCAAGATGCTGCCACATATCAACCAGGACTTTACTTAACTCCAG CTCAGGTTGTTCTAGCTGATTTTTGTAGACCTTGATTTCATAGATCTAATATGAAGTAGTTGAACATGTTATTCTTTGTC AATCTGAGTTAACTTTATTGTCACATACATTAGCTAATGAAATTTATTGCTTGAATTCTCTCATGAATTATTCATATCGT TCTAGTTTGTTCGGACAATATATTGGTCATTATTATTGTCATATTTATCTCTCTTCAAAACTTTTTTTTTGTTTGTTTAC AGTTTATTTTTAGTTTCACTACTGATAGTAGGGTTTCTTGTCTGGGTTGGACGCAGAGAGAAGCAGTTGAAGCTTTAATT CAGGAACTCCCAAAGTTCAGGTTAAAGGCTGTTCCTACTGATTGCAGTGAATGTCCCGTCTGCTTAGAAGAGTTCCATGA AGGGAATGAGGTATACTTTTTCAGGGTCTAAACCAAGCCATTTTGTATGCTGTACAGTTCATTACTGAAAAATGTGCTCT TTGTCAAACCTAATGAATTCTTGGAATCCTGCACTTGAGATGGTTGAGATGCATTGTTTAGATTAATTGAAAATTATAGT TTCTAACTTACAGTAATGCAGGTCCGTGGCTTGCCTTGCGCTCACAATTTTCATGTTGAATGCATTGATGAGTGGCTTAG GCTGAATGTGAAATGTCCTCGGTGCCGATGCTCGGTGTTTCCAAATCTTGATCTCAGTGCCCTGTCCAACCTCCGTGCTG ATTCCGAACGTTCGCCTGCGAGTGTTATGACAACAACCAGATATGTGAGAGGCCAACCTGCTAGTCAAAGTTACCGGTTA CGATTACAGGGTCTTCTCCGCCCAGTGCGTGCTGAAGTTGCAGGGCCAGTTGGTGACACCGATGATGCTTTGGATAATGC TGAGAACGGAGCTGTACCTGTCGGGAGTCGAAATGCATCAACTAGAGAGCAGGTCTCTTCTGTTGAATGCATGCCTGTGA GTGTTTCCTCTGCACAAAGTTAA
CDS sequence (LotjaGi4g1v0235100.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTTGTGGATAATGGGCTTGCTGCGGGAATGGGATTAGATTTTGGGTGGCAGCAGAGGTATGCTCGTTTCTGTGGAAG AGTAGTAGTCCTTTCAGTCCTTGCATTGCTTCTCTATCCATTTCTTTGGGCTTGGACTATTATTGGTACCCTGTGGTTTA GCAGTTCCAAGAACTGTTTGCCTGAACAGGGTCAGAAATGGGCCTTCCTCATCTGGTTGCTTTTTAGCTACTGTGGACTC TTTTGCATTGCTTGCATCTCACTTGGGAAGTGGTGGACACGGAGACAAGCACACTTATTGCGGGCCCAACAGGGTATCCC TGTATCTGAATACGGGGTTCTGGTTGATATGATCCGCGTTCCTGATTGGGCATTTGAAGCTGCAGGTCAAGAAACAAGAG TCATGGCCCAAGATGCTGCCACATATCAACCAGGACTTTACTTAACTCCAGCTCAGAGAGAAGCAGTTGAAGCTTTAATT CAGGAACTCCCAAAGTTCAGGTTAAAGGCTGTTCCTACTGATTGCAGTGAATGTCCCGTCTGCTTAGAAGAGTTCCATGA AGGGAATGAGGTCCGTGGCTTGCCTTGCGCTCACAATTTTCATGTTGAATGCATTGATGAGTGGCTTAGGCTGAATGTGA AATGTCCTCGGTGCCGATGCTCGGTGTTTCCAAATCTTGATCTCAGTGCCCTGTCCAACCTCCGTGCTGATTCCGAACGT TCGCCTGCGAGTGTTATGACAACAACCAGATATGTGAGAGGCCAACCTGCTAGTCAAAGTTACCGGTTACGATTACAGGG TCTTCTCCGCCCAGTGCGTGCTGAAGTTGCAGGGCCAGTTGGTGACACCGATGATGCTTTGGATAATGCTGAGAACGGAG CTGTACCTGTCGGGAGTCGAAATGCATCAACTAGAGAGCAGGTCTCTTCTGTTGAATGCATGCCTGTGAGTGTTTCCTCT GCACAAAGTTAA
Protein sequence (LotjaGi4g1v0235100.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFVDNGLAAGMGLDFGWQQRYARFCGRVVVLSVLALLLYPFLWAWTIIGTLWFSSSKNCLPEQGQKWAFLIWLLFSYCGL FCIACISLGKWWTRRQAHLLRAQQGIPVSEYGVLVDMIRVPDWAFEAAGQETRVMAQDAATYQPGLYLTPAQREAVEALI QELPKFRLKAVPTDCSECPVCLEEFHEGNEVRGLPCAHNFHVECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRADSER SPASVMTTTRYVRGQPASQSYRLRLQGLLRPVRAEVAGPVGDTDDALDNAENGAVPVGSRNASTREQVSSVECMPVSVSS AQS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 309 | 309 | 2.5E-176 | – | |
| Phobius | 1 | 27 | 27 | - | – | |
| PANTHER | 1 | 309 | 309 | 2.5E-176 | – | |
| Phobius | 28 | 55 | 28 | - | – | |
| TMHMM | 30 | 52 | 23 | - | – | |
| Phobius | 56 | 66 | 11 | - | – | |
| TMHMM | 67 | 89 | 23 | - | – | |
| Phobius | 67 | 89 | 23 | - | – | |
| Phobius | 90 | 323 | 234 | - | – | |
| Gene3D | 147 | 224 | 78 | 1.3E-18 | ||
| SUPERFAMILY | 159 | 227 | 69 | 8.84E-21 | – | |
| CDD | 177 | 221 | 45 | 3.25207E-18 | – | |
| Pfam | 177 | 219 | 43 | 2.3E-13 | ||
| SMART | 178 | 218 | 41 | 7.9E-7 | ||
| ProSiteProfiles | 178 | 219 | 42 | 13.035 | ||
| MobiDBLite | 279 | 306 | 28 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0235100.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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