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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0239400 |
| Transcript ID | LotjaGi4g1v0239400.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribonuclease 3; TAIR: AT1G24450.1 Ribonuclease III family protein; Swiss-Prot: sp|Q9FYL8|NFD2_ARATH Protein NUCLEAR FUSION DEFECTIVE 2; TrEMBL-Plants: tr|I3T487|I3T487_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0239400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:55601121..55604330) extracted from Lotus japonicus Gifu genome v1.2.
TAGAGAACCCTAATTTTGAGATGCAATGTGTCGTCGTTTAAAAGATCAAAGGAAAAAGGTGTTATTCCTTATCAACAAAG TAAAGTGAAATTGGCCTAAAGCGATTTCAGAGAAGAGAAATCAGTAAACTCCGAGTGTGACTGAGAGAGAGAGAGAGAGA GAGAGCAAAGAGAAAGAAAGCAGTAACCTCCATAATCTGACTCCAAAATGCGATCCTCTGCCACTCTTCCCTTCACCCTC TTCACTCTCATCCTCATCCCCATCCTCCCCCATGCCCAGGTTCTCTTCTTCTTCTTCTTCTTCTTCCTCATTTACATCCA TCGTTTTGCTCCAAAACCTAACTCTCCCTCAACAATCTCCTCTCTTCATCACTTTTTCTTGTGCAGGGGCATTCACTACT GTCGCCGTTTCCATCAGCTCTCGAAACCCTCCAGAAACAACTAGGGTATCATGCTCTTTACTTCACATCCTTAATCCCAT TTTCTTTTTTATTTGCTGAATATGTTGCTATTTTTCATCTTGATCAGCTACAATTTCAAGACCATTAGTCTCCTTCGTCG CGCGATGACCCACGCTTCATTCTCCGAGGAGAACAACAAAGCATTGAGCATTTTGGGTGCTGCTGTCATTGAAACATCTG CTTCTTTTCACTTGATTTCCAAGGACATTGATATTTCTGCCAAAGAGCTTAACCGTAGATTGTCCCAGGTCTCCAATGTG GAATCTTCCTGTGCTGTTGATGGAGTGCATTTGGGCTTGCACAAGGTGGTTCGAGTCTCGCCTAAGACCAATTCCTCTGC CCCTGCTGTGGTTTGTGGCGCGTTCCGGGCAATTTTTGGTGCTATTGCTATTGATACTGGGAAATCGGATGATGCCGGTA ATGTTTTCTGGACCATTCATGGTGTTGGTGGTGTTGGGGTTGCTGCAGCATTGTGATATGTTAGTTTAATTTTCAGTAGT CTTCTCCATGTGTTTGATGCCTAAGATACTTCTTAATGACTCGTGCATTAGTTGTTTATAGTCTCTAGTATGTATAATTA ACTGTTTTAGTACATGACCACTACTCCACTAGTTGTGAAGCCGCGAATCGCGATATATGATGCAGTAGTTGAATGAGTAT ATATGACTTCTGTCTGTTTTACAATTTTGTTGCTGTTAGTATACTCTAGTCTTCAAAAGAACTGGTAGCAACACCCTCGT TATTGGTGAAAATTCATGTGAATCCATAAGTCACATAGGTTCCAGCTTCCAATTTGGTGGGACACGCATGAATTCCAATA TACAATAGTGTATTAGAGAGTGTGAATATTAGCATTCATCTCTATTTTATGAGGTCTTTCAGCTACTGCCAATTGTTTTC TTGTGCTACTAATAGCAAGACTTGAAATTGATTCACTGAAGTTATGGAGGACATTGAGTTTGTCCTCTATATATATGTAG GGCTGGGACATCAATTTTGTGCTTACTGTCCATTGTTTTGTTTTTGCTAGTTATGTTAACACTGAGTGAATTTGCTAGTT ATGTAGGTTGAATTTTAATCAACCTCACTTAAGAAACTGTGCCTCATTAAAACCTCCCTAAGGAAAACATTAGGAAGGGA AAAAAAGTACACAGATCAAGAGTTAATCAAGTAAAAACATACAGCTCCCTACCCATTGAAATATATGTATTCTTTCCCTT GCCATACAATAGTGTCATATCTACCATACTTTGTAACCCAGCATGCCTCAAGTCACATGAGATCGCTCCTTCATGCATCC GCTAGCTTCTTTCCTTAACCTTTGTTCCATCAATTCCAGATCACTCAAACATTTTTCTACATTTATTCTCCATGCATCAA ATCTGATCTATCCTCCAACCTGAGCAGTCCACCAAATCAACAAAAAAACATACCCCCACCATAGGTAACTTGAGTGAAAC CCGCCAATGCACAACAAACCAACAATCAGAATACAATCTTAAACAAACAGTCACAAGAAATTAGCTTGACTCCTCCTGCA ATAAATTCATGCGGTAGCACCTGAGTCATTGATGTTGTTACTTCTATCAGGGATGGATCTTATTCAATATTAGGTGAGAA CTGTCTTCTCATTCTGTGGAGTTGTTTGGGTTATGTCAGTCATTTAATTATTTCTTTGACTCTGTGTTCATCAAAGTTCC TAATCTTTTACATATCTCTTTGTTTTCATAAGTTGAATGAGTTGTCTCTGTGAATGTATCATATCTATCCTCTGCTTACC TAATTATTATGGGGCATCTTAAAACAGTCAATTTTTATAACATAGGTGACATCTTTGAATTTTTGTAGCATTTACTAACT TTTAGAAGAACTCATAGGTGACAGATGGTGAGGGAGAACATGCTGCCCATGTTGCTGGATATGGAGAAAGTATCAATGAT AGTGCTCCTAAAAATTGTGAAAAGAAAACTGAAAGTGTCTGGGAGTGAGCTTTATGAAGATGCAGATAGCAAGTTATGAA AGGTTGAAACACACGTAGTGGAGAAGCTAGAAATCAGTCGTCATAACTTGGCCAATGCTGATGATGGAATGTTAGGTGAA ATTAATCGCTTGAAGGCAATTAAGATAACTGATGGGGGGGTCCAACTGCGAGGGTCATTTTTTACCAATTGCTGGGTTCA AGGCCCAGGAAAATCTTGAACCTAAGTTTAAACCTGTTGGCTTTTAGAGGTTCATTACTTGATGGTGGATATGGCTTAGC TGGGTATTATGTGTTAGCATCATGTAGGTCCCTTTTTTTGTATATCTATGGGGCCACTGAACTAAGTATTGTATTTAATT AAGTGTGATGCTGGATGTCCTATGTTACAAGTACATGTAGTGTGGTGAACTTGGTATTTGTAACCTTTTGATAATTGTGA CCTGCAGAACTGTAGTTTAAGTAACCCTTTTATCAATATAAGTTGTTGTGTTTGTATTTGAACTTCTTATTATGTTATCT TCATTTGTTTGTTTCCCAACAATATGCTTATAAGCATGATTAAATCATATGTAAGGCTTATTCTGATGGTCTTGGGAATG AAATAGACTTCTATCATTTCCTTCATTTTATTTAATGATTGAATCACGGAACTCAGATGCCAAAAAATAAGCTTCTGCTG ATTTTAGCAACATATAAGTAAGAGAAGTCATCTTCCAGATTTTGATGTGGTTATACACGTACAATTGGTTTTATTGAAGA TGGACTTCAA
CDS sequence (LotjaGi4g1v0239400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCGATCCTCTGCCACTCTTCCCTTCACCCTCTTCACTCTCATCCTCATCCCCATCCTCCCCCATGCCCAGGGGCATTC ACTACTGTCGCCGTTTCCATCAGCTCTCGAAACCCTCCAGAAACAACTAGGCTACAATTTCAAGACCATTAGTCTCCTTC GTCGCGCGATGACCCACGCTTCATTCTCCGAGGAGAACAACAAAGCATTGAGCATTTTGGGTGCTGCTGTCATTGAAACA TCTGCTTCTTTTCACTTGATTTCCAAGGACATTGATATTTCTGCCAAAGAGCTTAACCGTAGATTGTCCCAGGTCTCCAA TGTGGAATCTTCCTGTGCTGTTGATGGAGTGCATTTGGGCTTGCACAAGGTGGTTCGAGTCTCGCCTAAGACCAATTCCT CTGCCCCTGCTGTGGTTTGTGGCGCGTTCCGGGCAATTTTTGGTGCTATTGCTATTGATACTGGGAAATCGGATGATGCC GGTAATGTTTTCTGGACCATTCATGGTGTTGGTGGTGTTGGGGTTGCTGCAGCATTGTGA
Protein sequence (LotjaGi4g1v0239400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRSSATLPFTLFTLILIPILPHAQGHSLLSPFPSALETLQKQLGYNFKTISLLRRAMTHASFSEENNKALSILGAAVIET SASFHLISKDIDISAKELNRRLSQVSNVESSCAVDGVHLGLHKVVRVSPKTNSSAPAVVCGAFRAIFGAIAIDTGKSDDA GNVFWTIHGVGGVGVAAAL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 25 | 25 | - | – | |
| Phobius | 1 | 25 | 25 | - | – | |
| Phobius | 1 | 8 | 8 | - | – | |
| Phobius | 9 | 20 | 12 | - | – | |
| Phobius | 21 | 25 | 5 | - | – | |
| Phobius | 26 | 179 | 154 | - | – | |
| SUPERFAMILY | 30 | 157 | 128 | 3.14E-21 | ||
| PANTHER | 34 | 156 | 123 | 7.2E-24 | – | |
| PANTHER | 34 | 156 | 123 | 7.2E-24 | – | |
| Gene3D | 34 | 168 | 135 | 1.7E-21 | ||
| ProSiteProfiles | 36 | 155 | 120 | 15.179 | ||
| CDD | 51 | 158 | 108 | 1.71363E-10 | ||
| Pfam | 51 | 157 | 107 | 5.9E-13 | ||
| SMART | 51 | 178 | 128 | 2.1E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ribonuclease III activity | Catalysis of the endonucleolytic cleavage of RNA with 5'-phosphomonoesters and 3'-OH termini; makes two staggered cuts in both strands of dsRNA, leaving a 3' overhang of 2 nt. | ||
| Biological process | RNA processing | Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. |
Expression pattern of LotjaGi4g1v0239400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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