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LotjaGi4g1v0241400.1

Overview

Field Value
Gene ID LotjaGi4g1v0241400
Transcript ID LotjaGi4g1v0241400.1
Lotus japonicus genome version Gifu v1.2
Description RING/U-box superfamily protein; TAIR: AT5G62910.1 RING/U-box superfamily protein; Swiss-Prot: sp|O95628|CNOT4_HUMAN CCR4-NOT transcription complex subunit 4; TrEMBL-Plants: tr|A0A151R8X5|A0A151R8X5_CAJCA CCR4-NOT transcription complex subunit 4; Found in the gene: LotjaGi4g1v0241400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:58957012..58963525) extracted from Lotus japonicus Gifu genome v1.2.

GTAATTAATTAATTAAAACCATGATAATCTCGCGTTAAAACATGCTTACGGAAACGCTAATAAGTCAACGACGTCGTTTC CACTTTGCATTCCTCGTCATTCCTTTTACAAACATACCCCTACTCCGCTTCGAGTTTCCGCAAACCCTCTCGTCGGTGCG CATGAAAATTAACAGAAAGAGAAGGGTATAACAGTCATTAGGTCTCCTATAAATTACCAACCTGGACCCTCGTGTGTGGC AAAAAGGGCGAAAGGATCAGAGGAGTTACCGTGACGCAATTTCATTCTCTCTCTAAAGTGTTTGTCGTCTCTCTCTCTCT CTCTCTCTCTCTCTCTAGAATTTTCTATCGTCCCGTTTTCGCAAATTAGGGTTTTGCCGATTCTCTTCCACTTCGAAATC AAATCCATCGGTTCCACCATGGTTTCCGATTCAATCGCCGCCGCTCCGATTCCCTCCGCCGCCAACACCAAGAACCCTGG CAAGAAGAAGAGGGTATGATTCTTCCGGTTTTGGTTTTGGTATTGAATTTCAGTTTCGATTTTGGTTTCATACTGATTTT CGTTGTTATCGGGTTTCAGACCAATAGGTCTGCGAAATTGAAGCAGTATAAGATTGATGCGCGTCGCGAGCAATGGCTTA ATCAAGGTATGTGACGTGCGAACCAATGTTTCAGTTGATTTGTTTCTTTTGCTGATCTTGTTCGATTTGAGTTGGTTTGG TTTCAGGTGCGGTTAAGAGCAAGGGGTGCAAGGATGGGGTGGATGATGATGGCCATGCGCTGCCATCGCCGGCTGCGGGG AAGCAGGGTAAGGGCTCGTTGCAGCAGCTTGAGATGAGGCGAGAAGGTGATGAGGATGATGGGTTGATTCATCAAGATAG TGATTCGGAGTCGCCGTCTAACAGTCCCACTAGTCCTGACTTGTGTGGTAATGATTCTGGGACGAGCTTCACTGGGGGTA GCAGTGGGGGAGGTAGCAGCAGCAGCAGTATCAGTTCCAGCAGTGCCGGGTGCTTCTCTGGGTATATCACTGAAGTGGAC GAAGAAGTAGAGGAGGAGGAGGGCGATGATGAAGGCTTGGATGATTGGGAGGCTGTTGCAGATGCTTTGGCCGCCGATGA CAAGAATCAATGCCCTTGTTCTGATTTGCCCCCTTCCCATGATGAGCATGTTGGGCAAACTGTTCCGCCTCGTGCAGCGG CTAATGGGTCGGATTCCAATTCTAAACCTGCGAGTGGTAGATTGGTTCCTTGGGGCTCTGGAAATGTCCGAGCTTGGAGG GCTGATGATGCTTTTCGCCCTCAGAGTTTGCCCAATCTTTCTAAGCAGCACAGTATGCCGAACCCTGATCGGTACTGTGG AGGGGTTCCCTGGTCTCCCAATTCTGCACCATCCTCTTGTCCCATATGCTTTGAGGATCTTGATTTAACTGACACGAGTT TTTTGCCATGCCTGTGTGGGTTTCGGCTTTGCCTCTTCTGCCACAAGAGGATTCTCGAGGATGATGGTCGGTGTCCTGGG TGCAGGAAGCCGTATGAGCGTGAACCTGTTGAGACAGAGGCAAGTGTGGTTGGTGGTAGCTTGACTCTTCGGTTGGCTCG CTCATGTAGCATGATTGAAAGGGCTTGAGTGGTTCTATGTTTTTCATGAGCTGTGTTTGCCGCGGTCTCTTCTTTTTTGC TTTATCGCACGTTTGTACTTTAGCTCGAAATATCTAATTTTCATAGTTCTAGTTGGTGTAGGGTTATGATGGGTTCTTTG AGCACCGCGAAATCAAGTTGTTTCTCATTTGATCTTATGGTGCATGTGTTACATGTAGTATACTCTTGTTGGTATGTGAA TACATAAGGTGGTATAGAAATTCAATACATTGGATATGGTTTCATCATATAATTTCCTTTATGCTTCAACTTCGCATTTT ACTTACAGTTTTTGTACTCCAGACTCTAAGACTTCTATGCATTATCATATTTAATTGCACATGCTCGTGCTTCTGTGTTT AAAATTTGATTTTTGCTCGTGTCTTATATTATTTTATGTTTTCTCCTACGTTTGTAGTTATTGCATTCAGAGTCTGCTAA TGATGTGTTCCTATTATGTTTTCTTTTCTCTTCATCTCAGATCTTGGTAACCTTATGTTAACTCATTGATAGTACATGCT ATTGATCATTAGTCAAACTATATTTGTTTCTGTCTTTTAATTGTTTTGAAATAATGTTGTGGCTTAATGTTTCTTTCTAT CTCTATAGGATCTAGGTTTCAGTGAACTTTTTGCTTCTTCTGTATGGAAATCATATTTGTTGTCCAATTATGTACCGTTC TTCTAGGATAGTAGGGAAGGATACAGCTAGGGAAGCTAGTTAGCAGGTCTATCAGTTAGTAACATAGAGAGAAGATTTGA TGGTAAGAGATATCAGTTAGTTAAATATAATATGGAGAATAAGGATGAAAGAAATCATTCAGAGAATTCGAAGTTGTATG AAAAAGCAAACTTTTTCATGTCATGGAAATCCTTGGAGGGGAAGCCTGTCTTATTGTCGATCATTCAATAAAATGTTCCT TACCTTTGGTCCCTTTAGATTTTCCATTTCTCTTTCTTGGGTTCCTAACACATTCTCTTAGTATCAATGTCTATCTGATT TAAGAATTTTGTTGGCAGTGTTAGCAAAGCTCTTAAGACTTAATGTACTACTACGGATAAGTAACTGATTTTATTTTATA TTTACATTTAACACAAAATTCTGTTGTGCAAAATTAGAATTTGTATAATATGGATCTTTTTGCCGAACTATCATCTTGCA TAAATATGGTAAATGTCATTTTTTAAGCTTGGTCCTTCCCTGCTCCATGTCCCCTACTCTGCTTACTTGAGGGTTCTGGT GTTTCCTTTTTTTAATGTAAGCTAACATTATAAATACAGCTTGATAGCTTGATTTAATTTATTCCATGACTTTTGAACAC TGCTTTTTGTTTCCTCATGATTATCTTATAGGGGGCGAAATAAACATGTGGTAAATATAAATTTGGAGACTGCTCAGTAG GGTTTTCAAGTTTTTCAAGGTATGAGATATCTTTTTAGCTTTCTGATATGCTTGTCATACGTTTGACTATGTCTTCTGCT TTCTTGGGGTTCTGTTCATTGGTAGTTTGGTACTTGACTAGCTATGTTTGAGGCCCAGTTTGGAAGAGCTTATTTGAGTT TATCTGACAGCATAAGCTCTTATGCCAGTGTATGGGAGGGCTTATGCAAACAGCTTATGGCAGGCCATAAGCTATTTTCA GCTTATTTTCATAAGTTACTCAGGATAGCTTATGAAAAACAGCTTATGCTTATATACAACTTATTTTTAATTTATTTCAA TAAATTTTTAAAAATAGCTTATGAATAAGCGCTTATGTCATAAGCGCTTATGACCATAAGTGCTTAATTAAGCTGTTTTT CCAAACGGGGCCTGAGTTCGATTGAACGTCATCAATTCAACATCCTGATTTCCAGTATTCTTTCAATTTGGTATGTCGCT CACTATTAGTAGTTCTTGTGGAGAACAATTATTGTATATGCAGACAACTTCCAACACATTTTCCCCCCATGATCAAGAGA GCCACAAAATAAGCAAGCTCCATTATAATCTTGGGTTGAACAGGGAAATTGGATTATTTGTATAATAATTAGTAGCTTGA TGTTAACTTTATCTCTATGGATGGAGTCTAATTCAATTTTTATGTAAAATAATAGTTAAAATACTAATCAAGTTTTGAGA TATGAAACTGAATGACAAACTGAATGACAATTAGTATGATGGTTATCTTTATACTCTTGGGGCCTTCTTGGTTGAGAAGA TAGAGTGCTGGAAGGTGAAAAGTTTGGAATGGAAGACATTTTCTCTTGCTTGGTATAATGAAAATGTGAGAAGGGTGGAA ATTTAATTGCCTTGCAATGGCAGATTTTATGCATCATTGTTTGATAATCATAATCTCATCTTTGGTTATCACAGTAACAT AAGCTTTCATAACTTGTTTCTATCTCTCCTGCAGTTACTAATTGAGATTTGTTGTAGTGTAGACAAAGGAATTGATAACA TGAAAGGTACTAGTGCTAATCGCTAATTTGCCATTTGAGAAGTATATAACCTTTCATTTTCATCTCTCAGAAGAAAAATT ATTATTACTCTTCGGTGTTGTTTTTTCAATGAAGTACACATACGTACCATAATCAGGTTGCTCTGCTAGTGGTAGGTCTG TCATTTTAATAAATTCTGTTTGATGACGTTCAAAAACGAGCTGTAGAGTGGGAACATTATCAATCAGAACATTTCTGATG ATTGTTTAATCAGTGTGATAAGTAACCGCAGTAGCTGAAATGCCGCTTTGCATACAGTATACCATTGGATTATTGGGTGC AGAGACATACACGAGAGCTAACTCTTAGGGATTGTAATTGGATATCTATGTCCATCAAAAGAAGTAAATTAGATATAGGA AGTTCCCTTATATTACATCTATAATTGCCTTGTGCTGTATTCTTGAACTTTGTTGATGTGTAAGCAAATGTTACTTTATC TCCCTAGGTGTACTGTGCACACCCTACTAATGTGTCTGGTCTTTGCTTGTTGTAAGTGCCAAACCATGATTTGGGGCATT TAGAACACATCCAAACTTGTACCAAGAAACCAATTATAATGTGTCCTTTAATTCATATTTTAGGTATATGCACTCTCATA ACTTGGGGTATGTTTAAATTATAATGCCATTTAATTTATAAAAGGATGCTTTCCATTGTGGGGGATGATATGTTATGAGA TGATATGCTTTTCATTTACAGAGTCTATTGTGACCCTAGTATGTTTTGTGGAGTTTTTTCTCCCCTTTGGAGCCTCAATA TCATCGGTAGCTAGTTTTGAACTCCATTATCTACTGTCAGCTTCAGAAGAAATGAAAATTTTGAATACAATTTTAAAGTC TGGTGTTTATCTGACATTCAAAAGTTTATTATAAATAATAGGGTGTCCAAATTTGATTGTCGGTTACATGGAGAAGGCTA AGGAAAGAGTCTTACAACTTATTTATATAGTTGGAGCGATTAATTTATATTTAAATAAATTCAAGTGTTAATACATTGTA TCTTAAGTGTAGTAGAGTAACTTCTAAGATGTGTAAGTTACACTATAGGTTATAGCTAGAAAATTTGCTCAATTTTGGAT TAGGAAGTCGTGTAGCATTTTTAATGGAAGTTGTGCTTCGTTTGTTGCCTATTTGAATAATCCCGAAATATAAGTTCAGA GAATTTCTTGTTCACCAAAATTAAGTTATAGTCAGATAGATTATTGATATCATCGAGTTTTTCTGTTCGTTTACTAAAAT TAAGTTAAGTCAGGGGAGAAGTTGATTTTTCTGTTAATAATAACTTGTTTTTTCATAATATCATTCTTATAGGCAAATTT AACTCTAAAAAATTATTTGAAAATTAATTTCATCAAACTTTGGAACTAATGCATCAAAGATTATTGTACCAAACTTCAGA GTAAAAGCATCCTTGCCCTTTGGAGTAAGTCATGGCATTTGTATTGAAAGATAAAATGCCCGGTCTGCTCTTGTGAGAAA TAAATTTATGCTCTTTTAGTGGTTTCGTCTACCGTGTAAACTGACACACGGTGCTTCAGTTTTATATCATCCATAGGATA TATTACTTAATAAATCAAGGGCTCAGATTTACTCATATTTAATTTCAAAAATTAAGGATTTACTCAAATTACAATATGCA TTTACGATAATGCCCATTTCACTATCTTCTTCCCCTTCCCTGGTGTTTGCTATGGTTCAACCGGACAACTCTCTTTCCTC CGGTGAACCACCACTGGATTTTATCCTAACAGAAGAAGAATCTAACTCATAACTACAAAATAGAAGAAACAAGCCCAAAT GCTTGTTTTTTATCCTAACAGAAGAAGAATCAAGAGGTAACATCAAGAGCTGCTAAGTCCCTGTAGCATATGTTAAATCT GTTTCATGCCTCTAAAATTTTCTTCTGATCATGATTTCACCATGCATATGGTATCATATTGGAAATCAACAAATAATTGC GATTTTAACCACACATCCAACAAATTAAAATTCTATTCCATGACAGCAATTCCTCCAGCAGCTTTAATGTCTTCTATTAT ATCATTTGCCTCCTCTTTTGTGACTCCTTGTTTAAGCAAAACGGGTACCTTTTCAACAAGATCTTTGGCCGTGAAATGGC TAGGTTGGAGTGCAAAAGAGAAGGAGAAGGTGAGAGGATCATGGAAGGAGGAAAGGTCGGAGGAGGTTGTGGAGGGGCGG AGTTCATTGGAGCGGCGGTTAACCACCAAGGCTAAATCTCAGATCTGGAAAGGATCAACCTTTCGAAGCTTGTTTGGGTT TGTGAATCTCAGAAAGGCTCAACCATAAGAGATATTGCGAGGGACAGAGCCTGATTTGGTGGTGCCGGTGAGGAATACGG CGGCGCCGGCGAGGATGACGGCGGCGCGGTGAGG
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0241400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGTTTCCGATTCAATCGCCGCCGCTCCGATTCCCTCCGCCGCCAACACCAAGAACCCTGGCAAGAAGAAGAGGACCAA TAGGTCTGCGAAATTGAAGCAGTATAAGATTGATGCGCGTCGCGAGCAATGGCTTAATCAAGGTGCGGTTAAGAGCAAGG GGTGCAAGGATGGGGTGGATGATGATGGCCATGCGCTGCCATCGCCGGCTGCGGGGAAGCAGGGTAAGGGCTCGTTGCAG CAGCTTGAGATGAGGCGAGAAGGTGATGAGGATGATGGGTTGATTCATCAAGATAGTGATTCGGAGTCGCCGTCTAACAG TCCCACTAGTCCTGACTTGTGTGGTAATGATTCTGGGACGAGCTTCACTGGGGGTAGCAGTGGGGGAGGTAGCAGCAGCA GCAGTATCAGTTCCAGCAGTGCCGGGTGCTTCTCTGGGTATATCACTGAAGTGGACGAAGAAGTAGAGGAGGAGGAGGGC GATGATGAAGGCTTGGATGATTGGGAGGCTGTTGCAGATGCTTTGGCCGCCGATGACAAGAATCAATGCCCTTGTTCTGA TTTGCCCCCTTCCCATGATGAGCATGTTGGGCAAACTGTTCCGCCTCGTGCAGCGGCTAATGGGTCGGATTCCAATTCTA AACCTGCGAGTGGTAGATTGGTTCCTTGGGGCTCTGGAAATGTCCGAGCTTGGAGGGCTGATGATGCTTTTCGCCCTCAG AGTTTGCCCAATCTTTCTAAGCAGCACAGTATGCCGAACCCTGATCGGTACTGTGGAGGGGTTCCCTGGTCTCCCAATTC TGCACCATCCTCTTGTCCCATATGCTTTGAGGATCTTGATTTAACTGACACGAGTTTTTTGCCATGCCTGTGTGGGTTTC GGCTTTGCCTCTTCTGCCACAAGAGGATTCTCGAGGATGATGGTCGGTGTCCTGGGTGCAGGAAGCCGTATGAGCGTGAA CCTGTTGAGACAGAGGCAAGTGTGGTTGGTGGTAGCTTGACTCTTCGGTTGGCTCGCTCATGTAGCATGATTGAAAGGGC TTGA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0241400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MVSDSIAAAPIPSAANTKNPGKKKRTNRSAKLKQYKIDARREQWLNQGAVKSKGCKDGVDDDGHALPSPAAGKQGKGSLQ QLEMRREGDEDDGLIHQDSDSESPSNSPTSPDLCGNDSGTSFTGGSSGGGSSSSSISSSSAGCFSGYITEVDEEVEEEEG DDEGLDDWEAVADALAADDKNQCPCSDLPPSHDEHVGQTVPPRAAANGSDSNSKPASGRLVPWGSGNVRAWRADDAFRPQ SLPNLSKQHSMPNPDRYCGGVPWSPNSAPSSCPICFEDLDLTDTSFLPCLCGFRLCLFCHKRILEDDGRCPGCRKPYERE PVETEASVVGGSLTLRLARSCSMIERA
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR12603
1 346 346 9.6E-109
IPR039780
PANTHER
PTHR12603:SF7
1 346 346 9.6E-109 –
MobiDBLite
mobidb-lite
1 220 220 - –
MobiDBLite
mobidb-lite
99 145 47 - –
MobiDBLite
mobidb-lite
150 169 20 - –
MobiDBLite
mobidb-lite
204 218 15 - –
Gene3D
G3DSA:3.30.40.10
264 329 66 1.5E-18
IPR013083
SUPERFAMILY
SSF57850
268 323 56 2.23E-13 –
Pfam
PF14570
272 318 47 2.1E-18 –
ProSiteProfiles
PS50089
272 314 43 9.17
IPR001841
CDD
cd16618
272 315 44 2.74462E-17
IPR039515

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004842
Molecular function Ubiquitin-protein transferase activity Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages.
Subterm of
GO:0030014
Cellular component CCR4-NOT complex The evolutionarily conserved CCR4-NOT complex is involved in several aspects of mRNA metabolism, including repression and activation of mRNA initiation, control of mRNA elongation, and the deadenylation and subsequent degradation of mRNA. In Saccharomyces the CCR4-NOT complex comprises a core complex of 9 proteins (Ccr4p, Caf1p, Caf40p, Caf130p, Not1p, Not2p, Not3p, Not4p, and Not5p), Caf4p, Caf16p, and several less well characterized proteins.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0241400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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