Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0247600 |
| Transcript ID | LotjaGi4g1v0247600.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ubiquitin-conjugating enzyme E2; TAIR: AT2G02760.1 ubiquiting-conjugating enzyme 2; Swiss-Prot: sp|P42745|UBC2_ARATH Ubiquitin-conjugating enzyme E2 2; TrEMBL-Plants: tr|A0A0A0KQJ6|A0A0A0KQJ6_CUCSA Uncharacterized protein; Found in the gene: LotjaGi4g1v0247600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:59904916..59907739) extracted from Lotus japonicus Gifu genome v1.2.
TGCCCTAGACGGTGCCGATGATTGATACAGTGTGTGGATCTATATCGAGAATCAATTTTTTATTTTCCGTTATTTTTTGT TGCCGACGATGCTCTGTGTGTGATTAATTGCGAATACTTGAATTATTATATGATTATCCACTGTTGGAATTCAAATTAAT TGTCTAGGTTTTGTTGTGTTGGAATTTTAGGAAGAGTTGAATTTTTTACTGTTTCTTCTTTGTGGCTGTTGGTTTGTATA GGTGGTAGCGATGTCGACTCCGGCTAGGAAGAGGCTGATGAGAGATTTTAAGAGGCTGCAACAAGACCCACCTGCAGGAA TCAGTGGTGCCCCTCAGGATAACAACATAATGCTCTGGAATGCTGTCATATTTGGGTAAATTGGATGAAGATGCATTGTT CTGTTTGTATTCGATCGCTTTATTTTATTTTAATAATTTCACTTTGTTTAAGTATGGATGGATAAGCAATTTCTGCTTTC TTGTCTGCTTTGTATTGCAGTCCTGATGATACTCCATGGGATGGAGGTGAGTCAGTCCTTTTACTACTACGGCTTCTATT TGAAAACAGTTTTGATTCAGTGTCAATTTGGTTACTCAATATCTTGTGTATTACTTGTATCTGTGATATTACATGAACGT GCTTTAATGGATGATTGTAGAATTATGTTGCAAAGAACATCATACTCATTGTCCTTCCATCCTCTAAAAGATTTTGGGAT GCTCTTCATATCTGTCTAGATTAGTTAAAATATAGTGATTTTTATTGAACTTGCATATAGATACTGGTTGGTGCTTTGGT GCTATTTTATGATTTTCTTTCTCTTCTGTTTTTGTTTTCCAATTTTAATTCTAACTATTGATTGTTATATGGTCTTACTT ATATTGATGCTCTAACTGTTATGCCTGTTAGAGACTGCATGTACCCTCTTTTGAAAAATATATGTTCTCTCAGACTATCC AGCTAAACTTTATTGTACTTTATTTTCGCAAAAAAATTAGGTGCTCACGGTCAAGTAGTTTTTATGTACATATTTGGATG TCATTTTCTTTTCTGTATTTAATTATATGTATTTTCATAACTTCATGTCTACATATTGAGTTATTCAGGTACGTTTAAGT TGACTCTCCAATTTACTGAGGACTATCCTAACAAGCCACCCACTGTGAGATTTGTCTCTAGAATGTTTCACCCAAACAGT AAGTTTTACGCGGAAAACATTGACCTTCTTATACATTAGTTAGCTATCTTGCTATTAATGTCTTTTTCTGCTCTGGGCAG TTTATGCGGATGGAAGTATCTGTTTGGACATATTGCAAAATCAGTGGAGTCCTATATATGATGTAGCTGCTATTCTCACT TCTATCCAGGTATCTTCTTGTAATCAATAACATCATAAGGTTATTAAACCATGAATTGCTAATTTTTTACCTGTGAGTCA TAATCCTTAACAAATAGTAAGATTTAGAGACACAATGAAGCGTAGATTGATATATTATGTATCATACAGATGATGCATAT TGCTCAATGTAATAATTTTTAACTACTGAGTTGACTGAATAACTTGGCCAGAAGTCTCACAAAACAATATCACAAGTCAG AACAAATGCAGAGCAATCCTAGCCAAATAACATGCACATAGAGTGAGCGCTGTGAAACCTTTTTAGCAGAATGGAAACTG AGCTATTCAAAAGCCAATTAGGGTGCATGGAGTGAGTTAGAGTGCATGACTGTGATACTCCTGTGTCAGAATCATGAAAA CAGAGCATTGGAATTGTCAGATAGGATATGTTTAGTAACATTATCTAGATCCTAAACAGAGTTTATTTGACTTTTCAATT TCTTTTGAGAATTAGTGAAAGAATCAAGAAAGAAAAATTAAAGTAGGCCTTGTTTGCTTTAGAACATGTTTCTTGTTTTG ACTTTTAATTATAAATGCACTTGTGTTTTACTTCCTATTTTCAAATGTTTGTATACAAAACAGTGAAAACAACGTGCTAT TGTTTCCACTGTTTCCCATAGAACCAATTCTAATCTTTGAAAACAGAAAATAAAGTAAAAAACTAGATCCTCCTGTTTTG AAGACTCCTTTCTCAAATAATTATTTTGCTTATAAAGACCACACTAAGTCAAATACATGAGAGAATTTTGTTTTAGTATT CCAGATACATATATATATATATATATGAACTCATTAGGCACTGGGAATTGAAGCTGGTATGAATTGTGCTAATAGGCTAC AAGCCTATGATGCACATATATATATATATATATATATATATCAGTTGTTTGCCCGTCTATTGTTATTATGGTTCTAGCAT ATTAAATATCTATAATATGTTATGCACCATGCTTCAATGTTGCCCTGTATTGGGATCATGGTGTCAGTGGGCCTTATTGC AAGAGTATGGTCCTGTGCTGGGAACTTGGTGCCAATCTTCCCTTTTTCCAAGAGTATGGCATGGGCCATTTACTTAAGAA TGGGATGACATTGAGCATCATTTTTTGCCACTCTGATATAACCTGAAATATCTTAGCTACTAGGGTGGTTGGGGTGTAGA GAATTTTACTATGCATGGCTGAAATGTCATATTTATGTAGAGTATTTTCATGGCATTTTTTAAAAATTGATCTATCCCTG CTCTGTAGTTGTTATTGTTAGTATGCTCTAAAAAGTAATTATTTCTTCTTGGCAGTCATTGCTTTGTGACCCCAACCCAA ATTCTCCTGCAAACTCGGAAGCAGCTCGAATGTTCAGTGAGAACAAGCGTGAGTACAATCGAAGAGTGCGGGAAATTGTG GAGCAGAGTTGGACAGCTGACTAA
CDS sequence (LotjaGi4g1v0247600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTGATACAGTGTGTGGATCTATATCGAGAATCAATTTTTTATTTTCCGTTATTTTTTGTTGCCGACGATGCTCTGT GGTAGCGATGTCGACTCCGGCTAGGAAGAGGCTGATGAGAGATTTTAAGAGGCTGCAACAAGACCCACCTGCAGGAATCA GTGGTGCCCCTCAGGATAACAACATAATGCTCTGGAATGCTGTCATATTTGGTCCTGATGATACTCCATGGGATGGAGGT ACGTTTAAGTTGACTCTCCAATTTACTGAGGACTATCCTAACAAGCCACCCACTGTGAGATTTGTCTCTAGAATGTTTCA CCCAAACATTTATGCGGATGGAAGTATCTGTTTGGACATATTGCAAAATCAGTGGAGTCCTATATATGATGTAGCTGCTA TTCTCACTTCTATCCAGTCATTGCTTTGTGACCCCAACCCAAATTCTCCTGCAAACTCGGAAGCAGCTCGAATGTTCAGT GAGAACAAGCGTGAGTACAATCGAAGAGTGCGGGAAATTGTGGAGCAGAGTTGGACAGCTGACTAA
Protein sequence (LotjaGi4g1v0247600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIDTVCGSISRINFLFSVIFCCRRCSVVAMSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGG TFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFS ENKREYNRRVREIVEQSWTAD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | - | – | |
| Phobius | 12 | 34 | 23 | - | – | |
| PANTHER | 20 | 181 | 162 | 4.2E-112 | – | |
| PANTHER | 20 | 181 | 162 | 4.2E-112 | – | |
| SUPERFAMILY | 26 | 179 | 154 | 8.0E-64 | ||
| Gene3D | 30 | 181 | 152 | 1.2E-71 | ||
| Phobius | 35 | 181 | 147 | - | – | |
| CDD | 36 | 174 | 139 | 1.51276E-75 | ||
| ProSiteProfiles | 36 | 168 | 133 | 47.38 | ||
| SMART | 36 | 179 | 144 | 5.4E-69 | – | |
| Pfam | 37 | 173 | 137 | 1.6E-52 | ||
| ProSitePatterns | 106 | 121 | 16 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0247600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…