Transcript — View — Lotus Base

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LotjaGi4g1v0260100.1

Overview

Field	Value
Gene ID	LotjaGi4g1v0260100
Transcript ID	LotjaGi4g1v0260100.1
Lotus japonicus genome version	Gifu v1.2
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp\|Q022S9\|XYLA_SOLUE Xylose isomerase; TrEMBL-Plants: tr\|A0A151U9A5\|A0A151U9A5_CAJCA Retrovirus-related Pol polyprotein from transposon TNT 1-94; Found in the gene: LotjaGi4g1v0260100
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr4:61725320..61727775) extracted from Lotus japonicus Gifu genome v1.2.

GAGAAATTCACAAACTCTTTTTCTCCCTTTTTCTCTGCAATTTCAGTTCTTTTGATATGGTATCAGATGAATTGAATTCC GCACTGTTCATCATCTTCTTCTCCCTGCGTCCGATGCTTGATTCTGCATTGTTCATCATCGATTCCTTTCTTCAATCGAT TCAGATTGCTTGATTTCTGCACTGTTCATCATTGATTTCTTTCTTCAATTGATTCTGATGCATCGTCTTCTTCTCTCTGC TCGTGATTTCGAGCCTTGATTCTATTTTCCGTTGTTGATTCTTGGTTTATCCTTCACTTCTCTGCTACTGTTCTTCGGTT TTCAAGCTGTTTTCATGGCAGATCTGAACAATCCGTATTATCTTCATCCTTCTGATCATCCTCGTTTGGTGCTCGTTACA CAACCCTTGTATGAGGACAACTATGCATCGTGGAAGCGTGCGATGACTCTTGCCTTGAATGGCAAAAACAAGATTGGTTT CGTTGATGGCATAATTGTGCAACCACCTCCAGATGATCCTCAGTTTCGTGCCTGGACTCGGAACAACAATATTGTAGCTT CTTGGTTGATCAACACGATCAACAAAGAAATCTCTGCAAGCGTAATCTACTCCACTACTGCAGCTGAAATCTGGCATGAT TTGCAGACTCAGTTTGAGCAACGGAATGGACCGCGTGTCTTTCAGCTTCACAAGGATATTATGCATTGTATGCAAGGTAC ACTCTCTGTGAGTCAATATTATACTCGAATCAAAACACTTTGGGAAGAGTTAGGTGAATATAGGCCACTTCATCATTGTA ACTGTGGTGGTGTGCAACCTCTGCTAGATCATTATCAGAATGAGTATGTTTTGATGTTTCTCATGGGACTCAATGAGTCG TTTTCTCACATCCGAGGTCAGATCCTTCTCATGCGTCCTTTGCCTGCCATTTCTGATGTTTTTTCATTGGTGATTCAAGA TGAGAAGCAACGACAGATTGGAACTTTTTCACAAGCACCTGGTGTGCAGTTTGCTGGAGCAGTCTCTGGAAAGAGTTCTT ATTCTCAAGCACCTGGTGTGAAATTTGCTGGAGCTGTATCTCACAGCAATATACCTAATGGAGCTCCACGTTTCCAGCAC ACTGCATCCTCTCAAGGTTATCCTAGTGCTTCACAAAGTTCTCAAGCCAACAAGCAAAAATCCTACAGACGTGATCGACC TGTTTGTGCTCATTGTGGCATTGATGGCCACACTAAGGATAAGTGCTTCAAACTGATTGGTTATCCTCAAGGTTATTTCA AGTCCAGAAATGAGAGTCCAGTGGTGAATCAAGTTTCAGCTGATGATCATGTTGATCAATCCTATGATGCTGAGTCTTCA TCCAAGAATAATGATGCTTACCTTGATCCTCCTATCACAAGGGATCAATTCAATCAGCTAATGTCTTACATTCAGAATCA CATGGCACAACAGTCTGTTTCTGAGGGTAATGCTTTCCTTCCTACCTTTGCAATTTTAGGAATTGTTAATACAGTTGATG TGCAACATCTTAATATGTCTACTTCTTGGATCCTAGATACAGGAGCATCATCTCATATTACTTGTTCTCTTCATTATTAC ACTGCACATAAGCCTTTAACAAACAAGTTTGTTCTTCTGCCTAATAAAACACTAGTTCCAGTCAAAGCTATAGGCACTGT TCTTTTAGCTTCTCATATCTTGCTGCACAATGTCTTGTATATTCCTAGCTTTCGAGTTAACTTGGTCTCAGTAAGTGCAT TGCTTAAAAATAGCTCTTATTCCTTAGCACTTACTGCCACTGATTTTACTCTTCAGGACATCAACCTGTCGAAAGTGATT GGCAAGGGTGATGTATCTCAGGGCATCTACAAGTTTGTTGTGCCTCAACCGTTGAATAATTCCTCTAGTATTTCTTCATT GTATAAATCACATTCTCATTCATTGTATAAACCACACACACATTCTTCCAGTTCTTCATTGTGTAATATTCATCCCATTG CTTCTACTGTTTCTTTTCCTTCTTCTTGTAATATTGCACCTACTTGTACAATTTCAGATCAAACTTGGCATGCACGTTTT GGCCATTTATCTGATGATGTATTGAAAATACTTAGTAAACAAGTTTCATTCTCATTATCTTCCAGTTTTACCAGTCATAA TTGCACAGTTTGTCCTTTATCCAAATTTAAACGATTACCTTTTCAGTCTAATAATCATTTGTCTCCACATGCTTTTGATC TTATACATTGTGATACTTGGGGACCCTTTCATGTTCCTACACATGATGGGAAGAGGTTTTTTATCACATTTGTGGATGAT GCCACTAGATTCACCTGGATTCATATGTTATCCTCTAAGGGCGAAGCAGCACAAGCTATTCAGAGGTTCTTTACTCTCAT CAAAACTCAATTTGGAGTAGTCATCAAGTCCATCCGATCTGACAATGCAAAAGAAC

Download Genomic Sequence

CDS sequence (LotjaGi4g1v0260100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCAGATCTGAACAATCCGTATTATCTTCATCCTTCTGATCATCCTCGTTTGGTGCTCGTTACACAACCCTTGTATGA GGACAACTATGCATCGTGGAAGCGTGCGATGACTCTTGCCTTGAATGGCAAAAACAAGATTGGTTTCGTTGATGGCATAA TTGTGCAACCACCTCCAGATGATCCTCAGTTTCGTGCCTGGACTCGGAACAACAATATTGTAGCTTCTTGGTTGATCAAC ACGATCAACAAAGAAATCTCTGCAAGCGTAATCTACTCCACTACTGCAGCTGAAATCTGGCATGATTTGCAGACTCAGTT TGAGCAACGGAATGGACCGCGTGTCTTTCAGCTTCACAAGGATATTATGCATTGTATGCAAGGTACACTCTCTGTGAGTC AATATTATACTCGAATCAAAACACTTTGGGAAGAGTTAGGTGAATATAGGCCACTTCATCATTGTAACTGTGGTGGTGTG CAACCTCTGCTAGATCATTATCAGAATGAGTATGTTTTGATGTTTCTCATGGGACTCAATGAGTCGTTTTCTCACATCCG AGGTCAGATCCTTCTCATGCGTCCTTTGCCTGCCATTTCTGATGTTTTTTCATTGGTGATTCAAGATGAGAAGCAACGAC AGATTGGAACTTTTTCACAAGCACCTGGTGTGCAGTTTGCTGGAGCAGTCTCTGGAAAGAGTTCTTATTCTCAAGCACCT GGTGTGAAATTTGCTGGAGCTGTATCTCACAGCAATATACCTAATGGAGCTCCACGTTTCCAGCACACTGCATCCTCTCA AGGTTATCCTAGTGCTTCACAAAGTTCTCAAGCCAACAAGCAAAAATCCTACAGACGTGATCGACCTGTTTGTGCTCATT GTGGCATTGATGGCCACACTAAGGATAAGTGCTTCAAACTGATTGGTTATCCTCAAGGTTATTTCAAGTCCAGAAATGAG AGTCCAGTGGTGAATCAAGTTTCAGCTGATGATCATGTTGATCAATCCTATGATGCTGAGTCTTCATCCAAGAATAATGA TGCTTACCTTGATCCTCCTATCACAAGGGATCAATTCAATCAGCTAATGTCTTACATTCAGAATCACATGGCACAACAGT CTGTTTCTGAGGGACATCAACCTGTCGAAAGTGATTGGCAAGGGTGA

Download CDS Sequence

Protein sequence (LotjaGi4g1v0260100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MADLNNPYYLHPSDHPRLVLVTQPLYEDNYASWKRAMTLALNGKNKIGFVDGIIVQPPPDDPQFRAWTRNNNIVASWLIN TINKEISASVIYSTTAAEIWHDLQTQFEQRNGPRVFQLHKDIMHCMQGTLSVSQYYTRIKTLWEELGEYRPLHHCNCGGV QPLLDHYQNEYVLMFLMGLNESFSHIRGQILLMRPLPAISDVFSLVIQDEKQRQIGTFSQAPGVQFAGAVSGKSSYSQAP GVKFAGAVSHSNIPNGAPRFQHTASSQGYPSASQSSQANKQKSYRRDRPVCAHCGIDGHTKDKCFKLIGYPQGYFKSRNE SPVVNQVSADDHVDQSYDAESSSKNNDAYLDPPITRDQFNQLMSYIQNHMAQQSVSEGHQPVESDWQG

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
Pfam	PF14244 View details on PF14244 Search for proteins/transripts with this domain View external data on PF14244	11	58	48	1.2E-17	IPR029472 Show description in modal box View details on IPR029472 Search for proteins/transripts with this domain View on EBI InterPro Service
PANTHER	PTHR34222 View details on PTHR34222 Search for proteins/transripts with this domain View external data on PTHR34222	44	343	300	3.2E-70	–
PANTHER	PTHR34222:SF5 View details on PTHR34222:SF5 Search for proteins/transripts with this domain View external data on PTHR34222:SF5	44	343	300	3.2E-70	–
Pfam	PF03732 View details on PF03732 Search for proteins/transripts with this domain View external data on PF03732	76	181	106	2.2E-11	IPR005162 Show description in modal box View details on IPR005162 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	255	287	33	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	255	280	26	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0260100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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