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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0262500 |
| Transcript ID | LotjaGi4g1v0262500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Single-stranded DNA-binding protein; TAIR: AT3G18580.1 Nucleic acid-binding, OB-fold-like protein; Swiss-Prot: sp|Q84J78|SSBP_ARATH Single-stranded DNA-binding protein, mitochondrial; TrEMBL-Plants: tr|V7CAJ9|V7CAJ9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0262500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:62556650..62560082) extracted from Lotus japonicus Gifu genome v1.2.
AAATGAATCAAAACCCTTCCACTTGAACAAAAGAGTGAGTTAGCTAATTGCTACCAACTGAGTAGGGTTTAAGACAATGC GAACCTCCATGGGCACGCTTTCAAGGACCCTTCATCGCTCTCTACTATCCACCCTCAATCCCAACCACCACCTTCCACGG CACTTCTCCACCACCCTCCTCTCCGACTCCGAAGACTCCCCCCACGGCGGCGACTCACCATCCCCTCCACCCTCACAAAC CGAAAGGACCATCTTCGATCGACCCCTCGAGAATGGCCTCGACGTCGGCATTTACAGGGTACCCAGATCATAATTTTCGA TTCTTCAACTACCCACTTCATCAATCAACGATTTTGATCTCGTTTGATTTGTTGGGTATGTGTGTGTGTGTGTGTGCAGG CTATACTGGTTGGGAAGGTTGGGCAGACCCCATTGCAGAAGAAGCTGAAGAGTGGAACGGTGGTGACTCTTCTCTCGCTC GGGACCGGAGGCATTCGCAACAATCGGAGGCCGTTGGATAATGAGAGCCCGAGGGACTATGCAAATCGCTGTGCTGTTCA GTGGCATCGGGTTACCATTTATCCTGAGAGATTGGGAACCCTTGTCATGAAACATGCTACTCCTGGGTGAGACTCACTTC CTTATTCTCAGTTTTCAGCTGCCATTTCAATTTGCAAATGCTTTTGTATTCTGATTGTGAAGTTTTCATTTATTTATTTT GTGTATTGGATATTGTAGCTCGACCTTGTATGTGGAGGGGAACTTGGAGAGTAAGGTTTTCTCGGATCCGACGACTGGTC TTGTACGTCGAATCAGAGAAGTTTCTGTTCGTAGAAATGGTAACCCCCCTGCTACTTTTTAATCTTGTTACAATACTAGT ATTAATTTGGTTGGTACTATGTATGAGAGATATTTTAGTTTCATGTTTATAGCTTCCCTTTGCCTTTAAATTTGAATAAC CAATCCTTTCGTTGAACCGTTGTTCTTTAGAACAATGGGTGTTCTGTGTTTGATTTTATCGGATTGCTGGTTTGAACTTG TTAACATGTGGGTGGGGAGACCTAGATGCCTAATCATGTGATCGCTTAGTTGTAAAGCAAAATCATTTGTGGGTGCAAGA ATGTTGTGGTTGTCTTGTGTGTAGGTTCTTTCTTGTGTGGTGAATTCCATTTTAACATCTTTCATGACCTTAAGGATAAG AAGGTTAGAATTCTGTTAGGGAATTCCTCATGTTACTATTATGTGGTGGCTCTCGAACATCAGTAATAGAATCGATCTAG GAATAATTTTGAGTGCTTCTTACGGTTTCTTTCATTTTATTTGAACTTGCTAATGGGAACTCAGACTTCCACCCCATGAC TGTGCACGAGTTTTTCACTTATTGTCTCTATTATGGTGGTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACA GTCCCCCAAACTTCATTGTATGCTATAAGATATTGGAGATTTAATATTGACAAGACTTCAAAATTTAGCCCTCAAAAGTT GAAACTCAAAAGGAATGAAACATAAAGTACAGTCTTACAGAGCAATTCCTTTAAATATGCTAGAGGCCAAAGACCTTATG AGTTGTTGTAAAAACTATCACTGGTTAATTGTGGTAACAATGGTCATTCTTTTGACATTTTGGATTCTTTGTTTGTCTAT GTGGCTCTGTCTCAATGAATTCAGCTCATCTTGTTGTTAAATCAAACTAAGAGAATTTCACAGAATAGACTTGTTTTTTG GCCAGCCCTAGCTAGAATAAAGCATTGAGGTGCTTCTACCATGGTATGTTCGGTAGGGAAGGTGAAAATTAGGTGCAGAA TTGAAATGTTTTAAATTTCATTTTTCAACCCTTGGTGCTGGGTGGGGTGTAGAAAGTGGATGGAAAATTAGCTTTACTTA ATTTCATGCTATGCAAGGAAAACCTCAAAACTGTGGGTTTGAAGTGTAAGACTCGACTTTCAACAGTTCTTCATTATTGT TTTACAAACAAATATAACATTCATTCTAGATTTTCCACTTCTCCTTTCTACATGCTCCATCTGCGTATGTTCTGCGCAAT GATCCATACTCATATTGCTATTTTTTTTGTTTTTTGAAGTTGATATATATGTACCATGATGAAAGGTTTTTGGTCGGTGC ATTTCTTCCAAGATATGGAACAATTAATTAATATGGGATTGAAGTTGTGATGGAGATAGGTGTTCTTGAGGAATGCCTAT CTTATATGCAAAACTGATTCTGAGCATCAACTATCACTTTGTACCTATTACTTCCACTTTTGGACTAATTATCTACTTGC TATTTGGTCTACTTTAGAGCCCATTTATTTAGACATAAAAAAACTGATTTAAAGTTGTATAGAATAGCCATTAATTATTT GGAAGTTATATGTAAATAAGAAGCTATCATGCAGTACTACAAATCTACAATAGTACTTGATCTATTTGTTAGTACTTCAT AACATCGTCACACACTATAATATCTTATTATTCAAAGTCTCTATTCCTCCCCCCCCCCCCCCCTTTCCCGATCCAAACCT TAGTTTCAATTAGCCATGGTTGATTTTGCTCTCTATATCTCTGTTTCCCCCTTAGTTTCCAATTGAAATATAGATTTCTT CTAGTATGGGAAGCCAACAGAAGATGTTGGTATGATTTATGTCACACTTTCCAAAGATGGTTGCCTATTAACATAATATT TGGCATACAACAGTAGAGAAGATTGCTTGAGAATAAGCTATTTTTAGTTCTTTACCATTAGACTTAATGCAGTACGACTT TATGTGCTCCACAGGTCGCGTTGTATTTTTAGGTCAAGGTGGTGATGCTGATGCTGATACACAACAAAATGACCTGAAAG CTGTTGGCTATTACTAGCATAGATTCTTCAAATGGGATTCAGTTGGCAATGGAGAATTTTTCGATTTTGTAATTATAATC TATTTTTTTTAACGCTCGAGTTGGAATCATTTACATAGGCATTTGTCATGATGGAAACTCTAGGTTGGAGTGATATTGTC TTGCTCTGTGAAATTATTCAGGGTATGTATTACTCCACCTTCCTGATTATGTAAACTTGGTGATAGTGAGTGTTTCCGTT CAGCTTTAAATTGGAGGAATAATTATTTTATGCTCTTTAAGTCAAAGTGACGATCTAATTCTCTGATGGATCATGTTAAA AACCGGATAACTTAGTTTTCAGTAGACAAAACCTATATTTTATGCTATCATTTTGCCCCAAGTATATACCCGCTAGTCTT GAAAGTTATAGGCTATGGCATCTCGATACAAGCTACTTCTTTGTTAGTACTTCACATCCTTAACTTGTGGAATGAGCAGG ATGTGTATCTCTGGATAAAACATCATCTGTGATCACAATATATTCATTAAATATTAAGAATAGTTAACTACAA
CDS sequence (LotjaGi4g1v0262500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCGAACCTCCATGGGCACGCTTTCAAGGACCCTTCATCGCTCTCTACTATCCACCCTCAATCCCAACCACCACCTTCC ACGGCACTTCTCCACCACCCTCCTCTCCGACTCCGAAGACTCCCCCCACGGCGGCGACTCACCATCCCCTCCACCCTCAC AAACCGAAAGGACCATCTTCGATCGACCCCTCGAGAATGGCCTCGACGTCGGCATTTACAGGGCTATACTGGTTGGGAAG GTTGGGCAGACCCCATTGCAGAAGAAGCTGAAGAGTGGAACGGTGGTGACTCTTCTCTCGCTCGGGACCGGAGGCATTCG CAACAATCGGAGGCCGTTGGATAATGAGAGCCCGAGGGACTATGCAAATCGCTGTGCTGTTCAGTGGCATCGGGTTACCA TTTATCCTGAGAGATTGGGAACCCTTGTCATGAAACATGCTACTCCTGGCTCGACCTTGTATGTGGAGGGGAACTTGGAG AGTAAGGTTTTCTCGGATCCGACGACTGGTCTTGTACGTCGAATCAGAGAAGTTTCTGTTCGTAGAAATGGTCGCGTTGT ATTTTTAGGTCAAGGTGGTGATGCTGATGCTGATACACAACAAAATGACCTGAAAGCTGTTGGCTATTACTAG
Protein sequence (LotjaGi4g1v0262500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRTSMGTLSRTLHRSLLSTLNPNHHLPRHFSTTLLSDSEDSPHGGDSPSPPPSQTERTIFDRPLENGLDVGIYRAILVGK VGQTPLQKKLKSGTVVTLLSLGTGGIRNNRRPLDNESPRDYANRCAVQWHRVTIYPERLGTLVMKHATPGSTLYVEGNLE SKVFSDPTTGLVRRIREVSVRRNGRVVFLGQGGDADADTQQNDLKAVGYY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 11 | 11 | - | – | |
| PANTHER | 7 | 205 | 199 | 7.0E-71 | – | |
| PANTHER | 7 | 205 | 199 | 7.0E-71 | ||
| MobiDBLite | 20 | 43 | 24 | - | – | |
| MobiDBLite | 20 | 58 | 39 | - | – | |
| Gene3D | 69 | 195 | 127 | 6.5E-24 | – | |
| SUPERFAMILY | 71 | 182 | 112 | 6.85E-15 | ||
| ProSiteProfiles | 72 | 187 | 116 | 13.439 | ||
| Pfam | 74 | 182 | 109 | 3.8E-18 | ||
| CDD | 76 | 182 | 107 | 1.8582E-13 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Single-stranded DNA binding | Interacting selectively and non-covalently with single-stranded DNA. | ||
| Biological process | DNA replication | The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA. |
Expression pattern of LotjaGi4g1v0262500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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