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LotjaGi4g1v0273800.1

Overview

Field Value
Gene ID LotjaGi4g1v0273800
Transcript ID LotjaGi4g1v0273800.1
Lotus japonicus genome version Gifu v1.2
Description BRCA1-associated protein; TAIR: AT2G42160.1 zinc finger (ubiquitin-hydrolase) domain-containing protein; Swiss-Prot: sp|Q7Z569|BRAP_HUMAN BRCA1-associated protein; TrEMBL-Plants: tr|I1MU69|I1MU69_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0273800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:64291403..64296642) extracted from Lotus japonicus Gifu genome v1.2.

TGGGTGCCAAATCTAGTCCCTCAAAGGAAGGTAGTAGAATAGAGATTTGTGTGATAAAAAAGAATTCATACGTTAAAGTT ATCAAAATGAACAACAAAATTGGCCTTTTGGGTGTTAAATCTAACTCCGGCTTTGTTATCAAAGAAGCAAGCCCCTTTGC ATTGAATTCGGTCACGAAGTCGTCTTCTCCGGCAAATTCCGATCCGCCATGTTCTTACTCCGAGTTCACTCAGTGGAAGC GGACCACCCTCTCGACCCCCAAACCATCTTCTCAGCTCCCATCCCCCAATCCCACATCCCTAAATTCACCGAACGCAGAG GCTTCCTCCACTTGTTCCGAACCACCACCGCCTCCTCCTCCTCCTCCTCTCTTCTCCTCTTCATCCTCGCCGTCCCCAAC TACCTCTCCTTCGAAGACTTCATTCGCTTCTGTAACCCTCACCTCGACCACCTCCATCACCTTCTCTTCATCAGGTACGC TACCCCTTCTTCTTCCTTTCAATCTTTGTTTCAGTAGGTTTAGGCAACAAAACCCTAATTTGTATGAATCTTGATTCAAT TGGGCAGGAATGATGGCATGGAAGATCGGTATAGTGTGTTGATTGAGTTTCATGATCAGGTTACTGCTGATGGATTTTAC AGCAATTTCAATGGGAAGAAGTTTTCTCCTGGCGAGGTAATCAGTTACTTGCAATCAAGTTTTATCCTTATATATGTGCT TGCATTTTACTCCATACCTTTTCGGTTTTCGAATTGCTTATCGAATGATGATCAAAATTTAGGCAGAGCTGTGCCATATT TTATCTTTGCTCTCCGTGGAGTACTCGGAGTTTGCAGAAGTTGCTGGGACTCCTCCTGTAGGTTGTACAGAAATACCAAC TTGCCCGGTTTGCCTCGGTGAGTTACAATGTTGTTTGCTTGGATCTTGGAGACTCTTTTTTCTTTCTTTCTTTCTTTCTT TTTTTGGTTTTATTTTGATAATCTCGTGAAACGATGTTTATGATATCTGTGTTCTATTTTCTACTTGTTTGAATGCTAGA GAGATTGGACCCAGATACAAGTGGAATACTTAAAACACTATGTGACCACTCATTTCAATGCCCTTGTGTCTCTAAATGGA CGTACTTATCGTGCCAGGTATGCAGGTTGTTCATTCCTTCAGATCTTGTTTCTACATTTTATGATACTTCTGATTTTGGT TGGTTTAGGTGATTCTACTGTCCCTACATGTTAGTTTAACCTTAATGCTTAGAGCATTATGGGCACCAAGGTGTTCTTGA TACGCTCAACGTGTCTACAAACACGTCCATAGTCTTCTCTTCTGGAGGTTGATTTGCGTTTAAAAAATTCTAATTCGCCT CCTTTTCAAAGATTCATATGACTTCTAAACCTTCCCCCTTGTTGCTGTTCATTTTCTCAGCAAACTTAAAATCCATCAAA GTTGTCCTTAGGTTTCCATAAGCTCCTGCCATTTATCCAGATTTAAGGGTTTAATTGGATAGAATTCTAGAACTTCATAC TTCTGATGTATTATTTGGAAGTTGAAAGAATAGAATCTTGTAATTTTGTTTAGACATCTCATCGTCAGGGTTAATACACA ATTTCACACTTTAAGTCCCAAAATGAAGGGTGTGTGTATTAGAAAAATTTTAGGCAAAAGTATTTTGATCTTTCTTAGGC TCAAATTTATGTAATGTGAAATGAAAGGGTAAGATTCCTCTCTAGTCTAAGGTGAGTTTGTCACTAAAGTGAACAAGTAA TCCTATATACGCCATTGATTTAATCTACATTATATTGTAATCTTAATGCACCAAAATCTACTGGTGGATACACTTTTACT TGCTCATTATAGAGACAAACTCAAGTTAGAAGAGCATTTCCAAGATGAAAGTCATATTATTGCTTTTTCCAGATTTGAAC TTCAGTCCTGTATTCCCCCCCACCCCCCTACCTAATTATTAATTTTAGGAGGCTGGGATACATGAATGTGTTGACTATTT TTATTTTCTCAAAAATTAGAAAGGAAATTAGGGTATCAGTCTCTACAATTATGATTACAGATAGAGCGACTTAATTTGAA TTATGACAGACACTACAGCAGTATTTAATTTGTAGTTATATTGTTTTGCGTCATATTTGTTATGCTGGAATTTTCTGTAC CAACTACCTAAAGCAGTGGTTTTATTGCGAGTGCATATGAAGAGATTATTATATTGATGGAGAATTCTATTTTAAAGTAT GATGTTTCCGTTGTAGGTGTGCCAATTCTGCCAGCAACAGGATGAGAAGCAAACCTGTTTTGTTTGTGGAACATTAGATG ACGTCTGGGTTTGTATGATTTGTGGATTTGTTGGATGTGGAAGGTAACATATTTAGTGTCAGTTGTTCAGTTTTCACTGA TGACTTGTGCACAAAAAAGCCCTTAATTATCATATTAAACAAAACAGTCACAATTTATTATCCTTGATAGGTTCTAATGC TTTTGTTGTCAGGGAAACTTTAATACATTGATTTTTCTTTTTCATCTAGATATAAAGAAGGACATGCTATTCAGCATTGG AAAGATACCCAGCATTGCTATTCTCTTGATTTTAAAACACAGCAAATTTGGGATTATGTGGGTGACAATTATGTCCATCG ACTGAACCAGAACCAGTCTAAGATTGATGGCAAGTTGGAGGAGATGAATTCTCGTTGTGTGTCACTGGAAGGAGATTGTG ATTCATGTGAATGTCCTGAAGATTTAGGAATTAATGGGGCACTTATCAACAGCAAAGTTGAAGCGGTATATCTCTCATGG AAAATACTTCTCTAAAATGAGTTTGTCTTTAAAGTGAGAGTATGGATGTATTTATCCTTAATTAGTGTTTAATATTACAA TGTGCTTTAAATTAAGCCAATGGTGGATGCATTTCTTATTTATTACAGAGACAAGCTCGCTTAAGAGGAGCCTTATCTAT TTCTCATATATTAAACTGCTGAATTTCTTATCTTTTATTTATGATGAAACTAGCATGGACAGATTAGTCTGTAACAAAAA CTTGTGCATCTATGCGGTGATTTTATTTGCCGTAACTAACACTAGACTCTGCATAAAACCCTTAGTGTCCATGTTTTTTG TTATAGACATAGGCTCATATATATAGCTATTCTAGAAATTGGGATGAAATGTCAAATAAGCCATCATTTGTGTAGTTCAA TTCCATTTCACAGATGTCAAGTAAACATTTTTTTGTTATTTACTTGTGGCACTCGATGTATCTTGCTCCTGATGTAGCTA GCATCTCGCATTAAATTTTTCATTTTCTTTGCCTTGCATGGTCACTGATTAACTGTTAAACATGATATCAGATTGTGGAT GAATACAACCGTCTTCTTGCTTCTCAGTTGGAGACTCAAAGACAAGTAAGTTAACTTTGCTTCGCTGTCCTTAAAGATCT TCCATTGATAAATTAGAATAATATTGTTAACAGGAGTCTAGGGATTGGATGTATGCAACTATTGACTATTCATGTCATCA ACTTTGGCTGAGAAATACCAGTTCCTGGGTTCCTAGAATGATATTGGAAGTGATGTAATATCATCTAGTGTGGTTGTCAT TTAGAACATTGAATCAGGTTACTTTCACTTATTATGAAAAGCTTTAGGACAACTGCATGAATCTACAGATCTTTTGATGC AATGATACTGATGATAATGGTTTTTGTGAAATCTGATTATCTTTATACCCTTTTGGTTTTAGCATTATGAATCTTTACTA GTGGAGGCCAAAAGTAAAGCGGAAAGTTCCCTATCTGAAGCAGTGGAGAAAGCTGCAACTTCTGAAATGCAGGATATCCA AAATGAACTTGAAAAGTGCACAGAAGAAAGAGATGCCGTTGCTGAGGTAACTATTATTCTCGTGCATTAGGTTTATTGTT TGCTTGAACTCTGCCATTTATCTATTTCTTTCTGCCCTTAGGTCAATCGCAAACTCATAAAAAATCAAGAGATGTGGCGG AATAAGGTTAAAGAAGCTGAACAGTGGTAGAAGCCTTAAGACTAGCATTTCGTTTTCTTTTTGTCTTTACTACTTTAGCT ACCAAGTTTTTCACATTAAAATCATTTGCTTACACAACTTCTCCATAATGTATTAAGATGTTTGTAAAGTAATTTTTTCC TTTGCTTATTGCTCCACTAACATCTCGGTGCTTATCTAAATATGTAATCATTTAGGGAAGCTACATCAATGGAGTCGTTC AATGAGAGGAAACTTGATTTGGAGGAACAGGTATTACAACAAACTTCAATAATTTATTGTATGGAAAAATTCCAAACTTA TTTTTCTGTGATGTGTTAAATTATAACTATAATACACACCGACAGATAAGAGATATCAAGATTTTTCTAGAAGCACAAAA GACAATTGATAAGATGTCAGATTCAAACGGAATCAAGGATGGAACAGTCTTACCAGTGGCCTATGAGCAATCTTCCTCAG GCAACAGTAAGAAAAACAGAAAGTCTGGTCGAAGGAGGAACTAGTTGTACCATCAACCACTGCACATTTGAAAAAAACTT GTGGATTTGTCTACTTTTTAGGAGGCATGTTTAGGGCTCAAATACCTGTGAGGATATAGAGGAGTTAGATCCAACTCAGG GCCTTAAATGGTTGTTGTCTGACTGTATATATTTGATGCTTGTGAATAGTTAGTTCAACTAGTTTGGCAGTCCCACTCCT CAGGCATTCTCTGAGCCTGGGATGCTTCTTGTGGTTAGCAAGTTGTATATTCAACTCCTTTGCAACTTGTTTGCTTTTTG TGGAACTACAGATAGCTAGATGATATCTTTGTAATTTTGAAAATATTATTGGGTGGAAAATAGCTTTGCAAAAAAAAAAT TACATGCTGGAAACTAATTTTCAGAATGCAATGTACGAACAACCCGTTACAGTTATAAACAACTAAAATTGAAATTATAT GTTGGATATTATTTTAACTTTGTGAACTTGTGGCAATTTAAAATCACCAAAATTTATGTGTCCTGGTGCTGCGAAGTGTC CATTAATCATTATTATTACATAACAATCTACAAACCCAATTCACAACACCAACCATATGAGGCACAAACTGTTAGAATTT TAAGGGTCCTTGATTGATAGATTTAAGTTTTATAAAATAAGTTGAATGAATGACTTAGGTCCCGTTTGAGAAAACAACTT AATTAAGCACTTATGACTTATGATCATAAGTGGTTATGAC
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0273800.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTTCTTACTCCGAGTTCACTCAGTGGAAGCGGACCACCCTCTCGACCCCCAAACCATCTTCTCAGCTCCCATCCCCCA ATCCCACATCCCTAAATTCACCGAACGCAGAGGCTTCCTCCACTTGTTCCGAACCACCACCGCCTCCTCCTCCTCCTCCT CTCTTCTCCTCTTCATCCTCGCCGTCCCCAACTACCTCTCCTTCGAAGACTTCATTCGCTTCTGTAACCCTCACCTCGAC CACCTCCATCACCTTCTCTTCATCAGGAATGATGGCATGGAAGATCGGTATAGTGTGTTGATTGAGTTTCATGATCAGGT TACTGCTGATGGATTTTACAGCAATTTCAATGGGAAGAAGTTTTCTCCTGGCGAGGCAGAGCTGTGCCATATTTTATCTT TGCTCTCCGTGGAGTACTCGGAGTTTGCAGAAGTTGCTGGGACTCCTCCTGTAGGTTGTACAGAAATACCAACTTGCCCG GTTTGCCTCGAGAGATTGGACCCAGATACAAGTGGAATACTTAAAACACTATGTGACCACTCATTTCAATGCCCTTGTGT CTCTAAATGGACGTACTTATCGTGCCAGGTGTGCCAATTCTGCCAGCAACAGGATGAGAAGCAAACCTGTTTTGTTTGTG GAACATTAGATGACGTCTGGGTTTGTATGATTTGTGGATTTGTTGGATGTGGAAGATATAAAGAAGGACATGCTATTCAG CATTGGAAAGATACCCAGCATTGCTATTCTCTTGATTTTAAAACACAGCAAATTTGGGATTATGTGGGTGACAATTATGT CCATCGACTGAACCAGAACCAGTCTAAGATTGATGGCAAGTTGGAGGAGATGAATTCTCGTTGTGTGTCACTGGAAGGAG ATTGTGATTCATGTGAATGTCCTGAAGATTTAGGAATTAATGGGGCACTTATCAACAGCAAAGTTGAAGCGATTGTGGAT GAATACAACCGTCTTCTTGCTTCTCAGTTGGAGACTCAAAGACAACATTATGAATCTTTACTAGTGGAGGCCAAAAGTAA AGCGGAAAGTTCCCTATCTGAAGCAGTGGAGAAAGCTGCAACTTCTGAAATGCAGGATATCCAAAATGAACTTGAAAAGT GCACAGAAGAAAGAGATGCCGTTGCTGAGGTCAATCGCAAACTCATAAAAAATCAAGAGATGTGGCGGAATAAGGTTAAA GAAGCTGAACAGTGGGAAGCTACATCAATGGAGTCGTTCAATGAGAGGAAACTTGATTTGGAGGAACAGATAAGAGATAT CAAGATTTTTCTAGAAGCACAAAAGACAATTGATAAGATGTCAGATTCAAACGGAATCAAGGATGGAACAGTCTTACCAG TGGCCTATGAGCAATCTTCCTCAGGCAACAGTAAGAAAAACAGAAAGTCTGGTCGAAGGAGGAACTAG
Download CDS Sequence

Protein sequence (LotjaGi4g1v0273800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MFLLRVHSVEADHPLDPQTIFSAPIPQSHIPKFTERRGFLHLFRTTTASSSSSSLLLFILAVPNYLSFEDFIRFCNPHLD HLHHLLFIRNDGMEDRYSVLIEFHDQVTADGFYSNFNGKKFSPGEAELCHILSLLSVEYSEFAEVAGTPPVGCTEIPTCP VCLERLDPDTSGILKTLCDHSFQCPCVSKWTYLSCQVCQFCQQQDEKQTCFVCGTLDDVWVCMICGFVGCGRYKEGHAIQ HWKDTQHCYSLDFKTQQIWDYVGDNYVHRLNQNQSKIDGKLEEMNSRCVSLEGDCDSCECPEDLGINGALINSKVEAIVD EYNRLLASQLETQRQHYESLLVEAKSKAESSLSEAVEKAATSEMQDIQNELEKCTEERDAVAEVNRKLIKNQEMWRNKVK EAEQWEATSMESFNERKLDLEEQIRDIKIFLEAQKTIDKMSDSNGIKDGTVLPVAYEQSSSGNSKKNRKSGRRRN
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24007:SF9
29 459 431 2.5E-157
IPR033273
PANTHER
PTHR24007
29 459 431 2.5E-157 –
Pfam
PF07576
51 145 95 1.4E-31
IPR011422
CDD
cd16457
157 190 34 1.93891E-15 –
ProSiteProfiles
PS50089
159 199 41 9.937
IPR001841
Gene3D
G3DSA:3.30.40.10
174 286 113 7.5E-23
IPR013083
SUPERFAMILY
SSF57850
176 274 99 5.08E-23 –
Pfam
PF02148
195 269 75 9.2E-18
IPR001607
ProSiteProfiles
PS50271
208 269 62 18.904
IPR001607
SMART
SM00290
209 258 50 5.4E-22
IPR001607
Coils
Coil
327 347 21 - –
Coils
Coil
357 387 31 - –
MobiDBLite
mobidb-lite
440 475 36 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000151
Cellular component Ubiquitin ligase complex A protein complex that includes a ubiquitin-protein ligase and enables ubiquitin protein ligase activity. The complex also contains other proteins that may confer substrate specificity on the complex.
Subterm of
GO:0004842
Molecular function Ubiquitin-protein transferase activity Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages.
Subterm of
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of
GO:0010029
Biological process Regulation of seed germination Any process that modulates the frequency, rate or extent of seed germination.
Subterm of
Regulates
GO:0016567
Biological process Protein ubiquitination The process in which one or more ubiquitin groups are added to a protein.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0273800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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