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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0282700 |
| Transcript ID | LotjaGi4g1v0282700.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Homeobox protein knotted-1, putative; TAIR: AT5G25220.1 homeobox protein knotted-1-like 3; Swiss-Prot: sp|P48000|KNAT3_ARATH Homeobox protein knotted-1-like 3; TrEMBL-Plants: tr|V7CDZ8|V7CDZ8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0282700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:65460885..65469550) extracted from Lotus japonicus Gifu genome v1.2.
CCCCAAACTCCCCACGTTATCAGCAATCCCACCGTTAGATCTCTCCCCCACTTTCTTGATCTCAACGTCAACCCTTTCTT TTAAAAGCGCTTTTTTCCAATCAACTTCTTCCTTCCTTCCTTTGCCTCTTCTCACTCATCAAGCAGCACCACCAACAACC ACAACTCTAAACCGTGCTTCTCTTCCTCAAAGTTACACCGCGTTTGGATATTCAATGAAACCAAATTAAAACCAATTAAA ATGTAGCGAAGGAAATATTATATATATATACACAGAGTAAGAGGATTAATTGAATTTTGAAAAAATGGCTTTCCACGACC ATCATCTCCAGCACGAAATCGCGTTCCAGCGTTTCGCGGAGGAGCAAGAGCTATCAGAGAACAGGGACATGCCGCCGCCG CAGCCGACGTGGCTGAACGCTCAGCAGCGGCAGCAGAATTTCATGCACCTGCAACCGGAGACTTCGACGGCGGAGAAGAG CGGTGGTGGTGGTGAGGATTTGAGGGAGTACAAAGCTGACATCCTCGGACACCAGCTTTACGAGCAGCTGTTATCTGCTC ACGTTTCTTGCCTGAGAATTGCGACGCCGGTGGACCAGCTTCCGAGGATCGACGCGCAGCTTCAGCAGTCGCAGCGCGTG CTGGAGAAGTACTCTGCTCTTGGGAGTAATCATAGAGTGGTGGATGAGAAGGAGCTTGATCAGTTCATGGTTTGTCCATC TTAAACTCTCTTCTTCTTCTTTTTCTACAGTAATCAATTCTGTGTGTTTCCTTGAATCACAACTACTTTAATTTTAGTTT AATTTAATCAATTTAATAGAGTAAGAAGAATACTAGCTAGCTGAAAGAATCTTAATTTACAAGTCCTTGCCACTTAATAT GCCTTCATTTCCACTACTTTGTCAACCCTCACTAATGTCTTTCTTATGTTCACGCTGCTTGTTAAATCAGAAATATCAAT CATGACTTCTATATACTCTTAGAGGTTAGTTGGTTTAGCACATGAAAACCCTATAATCACTTGAAGATAAGTACAATAGT TTTGGAGTTTCATGCTTTATTTTGTGAGTTCACTGGGAAAATGTTTCTTTCACACCTCTATAAGAGGTGGAAAGGTGGAA AGAGGTGGAATGAGGAGAGAGATTAGAAGGAAAAAAAAAAGTATAAGAGAGAAAGTATGAGATGTGATAGATAATAAGAT GAGATAGATAAAAATAAAAATAAGTGAAAATGAAATGTTTAAAATATTGGGTGTGTATATATCGTTACTGAGTTCACTGG CAATTCAAACAAGTTATTACATTTTTACAAAATCACTTATTGCTTCTTCCAAGTTCTTTTTTATTTTTTGGTGGGTTTCC AAATACACCAAATTTTTTGAGCTTTGCATAATAACTTTAATCTATTCACATTGATGTTTTTGTTTTCTTCTATTTCAGCA TACTTTTTTTTCTACCACATTACCTATCATATATCTCATTCTTTCTCTCCATAAAGTTAATTTTGAGTGGTATAAATGAG TTATATTTATTTCTAAAATATTCACATGCATTTTCTCTTTCATCTCATTTATATTTACTTTTTCCCCATATTTTTCTTTA TTTTCAATGCATTATTCATCATATCAAGTTTCTCTCATCTATTGATATCTTCGGTGGCTATGAGGTGAAATTGAATGTGA AGATAAGGTTTAATAATGCGTGCATCATTTTGAGACATCATTTATTATTTTATCTCCTTTTCGATCACATCATATATATA TATATCACACTTATCACTTAATTCTTCTCTTTTCTTGTCTTTGTCAAGTGGTCTACATGGTGCTTTATTAATTAGATTAA AAATCAGTGTTAACTTAAAAGATTAACAGTAATACTACTGGTTAATTTTGAACTTTAATTTTTGTGATGGATGGTAGTAC GAGGCATTTTGGGCCAGTAAAAGTGAGTGAATCTGATTTGTCCAGTTGAGGGTTGTGTGACTGTGAGGTGTTCCTCCCTT CAATAATGCAAAGGCCTTTTCAGAGTGCTTTATCGAATCTTTCTGTTAATGGAGTCTTGGCCTTCCCACTTCTTTTTTTC TCTTTTTGCTGAAACCTTGATGGGTCAGTTCTTCAATTCTTGCAGAATATGTTCTTCTGTTGAACCTCTCATGATCAGTT TTCTCAACCTTTACTCCCTCATCTCTGTACGTTTCTGGCATCTTGCCTGCCAAAACTAGCATAATGTGAGGATTACAGAT TCTGTACGTAAATACGTAATAATATTTGGCTATGGTTGTCCTCAAGTATGTATTTCAGTATATGGCACTGGCCAGGCCGT GTACAGACATTTTGGGGCCTTAGGCGAAAATGTAAAAATGACTTTTTTTTACAAGAATTTTAAAGAGACTTAGTATATTA TATAAAGTATAAATTTTTATATTAATCGTCTAGCTTTTTAAGCTGCACCATGTTGAGATTGAATTAATTTTTCGACTTCT TAGCTGCACTAAGTTGAGAATAGAGATGAAGGGAAGGAGATTTTTTTTGTGATAAACCAGAAGAAGTGTAAGCGTTTAAA CAATGGAGAGAGTGAAAGATTGAGAGATAATTGGAATAAATTAAGGGATAATTTTTTTTTTATTTTTTGAGATAAATAAA TATTTTAAATTATATTAATGATGAAATTGAATAGTTTTAAAAGAGATGATAATATTTCAAAAAAAAAAGAGATGATAATA TTTATATAACTTTCCTTTTTAATTGGCTAATTTTTAAGGAAGAGAAAAGATTCCTATTTATTTCATTTTAGTCTACTATG AGTATTTATTTTTGGTAGGCATTTCCAATATATCTAATATATACTCTATCAATCAGTTTTTTATATATATCACCCGTCCC AAATTTCAATTCGGCATTATATATCCATTACGCTATTTGTTTCCTTTTTTTTTTTTTGTCAAATCTGTTTGATTTCTTAC GCTTCTAATATGCACCTTGGGTTTTTTTAACCAAAAATTTTTGGACCTAATTTTTTTATGGGGCCTTAGGCAGCTGCCTT TTTGGCATAAAGGCTTCCACGGCCCTGGCACTGGCGAATCTATTAATGCACAAATCAAATCAACTCTAACTTGATGATTT TTTTCAACATTGATTCTGAATGTCCTATTTACACCGTTGTGTAGACTACTTAGTGTCATGTCACGTCGTTCCTCCCTGGC TGCATTGTGTAGAAATTGAATGTAGCTGCATTTATAGGGGAATCCGAGCTTAAGTTAGAATAATGGGTTAATTGCAGTTT TGCTCCCTCATCTTTTACCTATGTGTGATTTACATTCCTCATATTTAAAATGAGTGAATTTAATCCCTCATGTTCCAATT TGTGAAAATCAGCTCCTTCCGTTAAGTTGTCATCCAATTTCAGACGGAAATCGTCTATGTGGACGATATTAATGACGTGG CTCTGACATTACGTGCCACTGGGATACCACGTCATCTATATTTTCTTTAAAAATAATTCTTTTTCCTTTAATTAAATTTT TTTTCTTTTAATCTTTCATCTTCTTCAACCTTCCTGTTTCATCTCTTCGTTAAACACCACAGCACCCCCACCACCATTCC CTTCTTCTTCTTTTCTCTTCATCCAACCACCATGAAATCAAATTTGAATCTCACACCATTAAACCCACTGTCACTGAATT AAACCCAGGCAACCCAGAAAAAAGTGAATCGCAGGGGAAGAGGGGAACAGGATGAAGCTAAAAACATGAATCTGAATTTC GTTTCTGGGATGGTTCCATCTTGAAGCTACAAAGGAAATCCCAAATCCCATCCTCACAATCGATCAACTCCTCCAGTCCC AACGGTCTCACCCTCAACGTCGTCGCGTCGTCTTCATCATCAACGCGTGGGATTTGCGAAAGTGGGTGAGGGTTGATGAC AAGGGGTTTGCGTCGCGGGTAGGGTCGATGGCGAAGAAACGGTGGCGTGATCGACGATGTGGGGAAGAAGGTGCCGGCGC TTGCTCTTACTCTCGTGTGAGATCGGTGGAGTTCGAGGTCAAATAGGACGAAGAGGAGAAGGGCTCTCTGCAAGGGAAGG GAAATCGAAGTGCTGGTTAATGTGGAGTGCCTGAGATCTGGGTTGAATCTAGGGTTCAAATCTTGTGCATTTGTATCAAG TTTTAATTTTTGGTTAGGAATTTGATTTGGTGGAAGATGGTCATGGAAGATGAAGCAGAACCATTTTCTGGGTAGCAATC TGATTTGGGATTATGGTTAAATGTATTAACCACTATCCTCAATTTTATTTTCCTTTTCTCTTTTTATTTTTTACGGTTAA AAACAGGGGTGCAGGTGTAAATAGGAAAAAAATGTGTAAATAGCAAGCCACGTCACCGAGCTCCGTTAAGTTTTAAACAG CTCTCTAACGGAAGGAGTTGATTTTCACAAATTGGAACATAAGAGATTAAATTCGCTCATTTTAAATATGAGGGAGGCAA ATCGCACATAGGTTAAAGATGAGGGAGCAAAACTGCAATTAAGCCTAGAATAATCCTGTGTCAGTTCATTTACGCGCTTT GGTGATAGACATGTAATAGTAATATTTTTATAAATATAGTTTTTTTTTGAAAACTATAAATATAGTTAAATCAGTGTAAT ATTTAATTAATGTTGTTCAAGCAATTTATTTTGTTTTAAGTTTGGCTTTTTGGAGTTTGACTCTCTATTCATGTTATAAT CCTTTTTGGCCCTCTTAACTTGATTGTTTGTTACTTTCTTTCTAGGGAAAAATGTCCTTATTAATTACTTCCATGTTTCT GAAGGTCTTTAATTTATGAGTTTTGATACTAATTAATTTATTTGTTGTAGACGCATTACGTTCTGTTGCTGTGTGCCTTC AAAGAACAATTGCAACAACATGTCCGTGTTCATGCTATGGAAGCAGTGATGGCTTGTTGGGATCTCGAGCAGTCTCTGCA AAGCTTGACAGGTAAAATTCTTAATCAGCATCATCATAAAAATCTTCTCTCCATTTCTTTTTTTAATTATCACATTAACA TTGCTAATATATAAAAGAGAAAAAACTTATCACACTACAAATAATTAGAAAAACTTAATCCATTGATACTCAAATCAACA AACATATCTAAAGGTAATAAATAAATAAACATTTTAAATTTGAAAATGTCAAAATTAATTCTTTTTTTTTGAAATAGTTA ATTTAAATCAAAGTAGCTTTATAAAAATATAAAAAAATCCAAAGTAACATATTCTATGGGTGTTTGGTTATCTTTGTTAC ATGCGTGGATGCTATTATGCTCAAACTACAGAAGAGATAAAAGCACTATATATCATGACATGCAAAAGAGCCTGGTCACC TTATAATCTCATTCATACACGAAAGAAGAATAAAAAAAAGCTCTAAAAATGCTCAACTTGGGTTCAAAGAGTTAAAACAC GTGATCATGTGTATCATTTTTTTTTCCTCCACTTGTATATTAATCCTGAAACTTTGACTTTTAAAATAATGTGATGATAA TAATTTTGAGTATGGTGTAAAATAATAATTCAAAGCCTATCGACCAAAATTAACGGAGAATAATGATATAAAAAATTAAA GAGCATATCGTAAATAACATGTATTGAATGTTAGTTGTAAAAATAAGATTCATGGGGATCATGTTCGGTCCATCATATAA CTACCCAAAATTAAAGTGTAAAACAAATTAGATTTGGCCATCATTTCATCTTACCTAACATCATATATGTTCACATCATG ATTAAGATTCAACTTATTATATGAGCATACAAAATTGCTGGGAGTGATCATTTATATGGTTAAGAATCAAACTAACTAAA TGATATGCATGAGCAGGTGTATCTCCAGGTGAAGGAACAGGTGCAACAATGTCAGACGATGAAGATGACCAGGCAGAGAG CAATGCCAACTTGTACGAAAGCAGCATGGACGGTGCTGACAGTCTTGGCTTTGGTCCTCTAGTCCCCACTGAGAGTGAAA GGTCTTTGATGGAGCGAGTCAGGCATGAGTTAAAGCATGAGCTCAAACAGGTAATCAATCAACTTGGAAATTTTTTGACA ATTAATTTTGAAGTCTAAACCAATTCTAAGAGGAAACTTCTGCAAGTAGCTTCTAGGTTTTAGAATTGATTCCGATGAAA GAAAAACTTATCCAAACATACTTTGTAAAAACTGATCCTAACTACATAAAGTTATACCTCTTTCTTATATAGGGATACAA GGAGAAGATTGTGGACATAAGAGAAGAAATTCTACGAAAGAGGCGAGCCGGGAAGCTCCCAGGGGACACCACATCTCTTT TGAAAGCTTGGTGGCAAGCACATTCAAAATGGCCCTACCCTACTGTAAGTAATTTGGACTCATGATGAATATTTAACTTC TTTTTTTGAAATCAAATATTTAACTTTATATGTACACAAGTTTTGCTATATATGTTGGTTGCTCATGTATACTTTGGGTT GCACTTGTGAATATGAATGTTTTAGGAGGAAGACAAAGCTAGATTGGTGCAGGAAACAGGGTTGCAATTAAAGCAGATAA ATAACTGGTTCATAAATCAAAGGAAAAGGAACTGGCATACTAACCCCTCATCAGCTACTAGCACCAAAACCAAGCGCAAG AGGTAGGCTAATAGATACTTTCTTCCTTGTGATATGGCTTTGTCTACGGTGGATCAAAAAGAATCTGCTTCATAAATTAA TAGAGTTCATCTGCATATTAATTTTAGAACGAGCATATTGTAAATAACATGTACTAAATGTTAGTAGCAAGACCATAATT TATGGATGAATCAGTTTTTAATATGGTTCACCATAGAATTGTTCAATCCTCCTGATCTCTTATGAGTTATGACTATATAT GGCATGCTGAGTTTTATTTCTGGATTGTATCAGTGCAGGCGAAACCAGTAACCAGAGCTTCATGTGAATGAACTCATGTT AGTCCAACATGAACGTGAAATGGTGGAATCTGGATGTAAAAGGGGAATTTATGATAAAATCACTGTAATGAAATAGTATT ATTGGTTCAATTACAAAATGTATTGTTGTATATGAGGCTGCTGCTTGATTTCCTGATATTGATTTAGAGAGAATTAATGT ACTTGATTAGATTAATGGGTAGCAAGGTGATACATAAATATATAATATCTCATTTAAAAAATTTGAATTCCTCAACTAGT ATTCCAAACAAACGCTGCATAGTACATGTTGGTACTCAGCAAATCTATTAAATAGTAGATGTAGTTTAGATTTTCAATTT TGTAATTTAAAGTTAGCATTTCTTATAGCTTCTTATCAGTTCTGACAAACTCCTACTTAGTTGCCAATTATCCTCATATG ATTGTGATGGCTAATTGAAGGATTATAAATTAAATAAATGTCCTAGCCTTTTAGGTATGCAAGTTGCATGAGGGGACAAC TACCACCAATATTTGCCTTCGTACAAGTTACAACAAAAGGAATTGCAAGTGGAAAGGATTTGACCTCAAGCAAAGGCAAA GAATAACAAGTATTTTTAACGCGTTTACTTCTGCAACACATCTATCCACAACTTTTTGTGATAAGGGAATCACCCATAGA ATTTAATTCTTGAAAGTGTCAACACTTTATTCTCAAAACTAATGGTTCATGTGTTTGTTGTTTTAAAGAATCATCATCCT CTTTCATCCATTTCCGACTTCATTTGGGCTAAGAGGAATAGATAAAACATGGAATATCGAAAGAAGAAAACAAAGTTGTT AAATTGCGGTCGAGGTTACAGTTGCATCACGATTGCGTTGCGGTCCTTCATATTGCAGAAGATTGTGAATAAACGTGATT GTCGCAACCAAAATCAAGTTAAATTGCCGTTTTGAAAACCTCCAAAACCTTGACATGCCGGCCGATATCATGGTTGCAGA CATTGAAGCCATGGTAAAAGAATATAAAGAATGGTATTCTTTGTAAATAATCACCACATAAGAATTACAAACATCAAACA AATTTAGGCAATCAGACATCTTTACAGTAGTAATTAAGAAAACAAGAACTCATGATGTTCCATTTTGGCGGTGACCAGCA GGAAAAGGAGCAGAGAATCTAGCTGAGAACCTGGGAGGCATGTCTTCATCATCTTCGCTCTCAGCCCTGCTGTTAAAATT CAGAGCATAGCTCTGTTCATCATACTGGAACCTCTTCTTCTTCTGCTGCCCACTTATCTTTCTAATGAAATTCTTCCACT TTGGTCCAGCAATCACTTCTGAAGCCTCTTTCACCTTCTTCATCTTCTCCACCATCCATCCCTCTCCTCCTCCTCCGTTT TGATCAATTAAGCGTTTACCTTCTTCTTCATGGCTCTGCCACCACTTCAAGTTGAAACCCTTGAAGCATCCACACCCACA TCCACTACCACTGGCTTCTTCAAAATCTTCTTCATGTTCCATTTCCATCACCAGTGGTTTTCTCTCGTAGGATGCTGCCA TGTTTTTTTGTTGTTGTTGCAGGTATAGGTATGAGGTTAATAAATTAGTGGTGAGTTTTATAATTGAGAAAGCATTTATA GGTGACGGGTGAGAAGAGATAAGATCAAAGGAGGAAAAGTCAAAGAAAGCGTAGGAGACATGTTTGAATTTTGAATTTAG AAGGTTCCACGCAAATTGAAGATGCT
CDS sequence (LotjaGi4g1v0282700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTTCCACGACCATCATCTCCAGCACGAAATCGCGTTCCAGCGTTTCGCGGAGGAGCAAGAGCTATCAGAGAACAG GGACATGCCGCCGCCGCAGCCGACGTGGCTGAACGCTCAGCAGCGGCAGCAGAATTTCATGCACCTGCAACCGGAGACTT CGACGGCGGAGAAGAGCGGTGGTGGTGGTGAGGATTTGAGGGAGTACAAAGCTGACATCCTCGGACACCAGCTTTACGAG CAGCTGTTATCTGCTCACGTTTCTTGCCTGAGAATTGCGACGCCGGTGGACCAGCTTCCGAGGATCGACGCGCAGCTTCA GCAGTCGCAGCGCGTGCTGGAGAAGTACTCTGCTCTTGGGAGTAATCATAGAGTGGTGGATGAGAAGGAGCTTGATCAGT TCATGACGCATTACGTTCTGTTGCTGTGTGCCTTCAAAGAACAATTGCAACAACATGTCCGTGTTCATGCTATGGAAGCA GTGATGGCTTGTTGGGATCTCGAGCAGTCTCTGCAAAGCTTGACAGGTGTATCTCCAGGTGAAGGAACAGGTGCAACAAT GTCAGACGATGAAGATGACCAGGCAGAGAGCAATGCCAACTTGTACGAAAGCAGCATGGACGGTGCTGACAGTCTTGGCT TTGGTCCTCTAGTCCCCACTGAGAGTGAAAGGTCTTTGATGGAGCGAGTCAGGCATGAGTTAAAGCATGAGCTCAAACAG GGATACAAGGAGAAGATTGTGGACATAAGAGAAGAAATTCTACGAAAGAGGCGAGCCGGGAAGCTCCCAGGGGACACCAC ATCTCTTTTGAAAGCTTGGTGGCAAGCACATTCAAAATGGCCCTACCCTACTGAGGAAGACAAAGCTAGATTGGTGCAGG AAACAGGGTTGCAATTAAAGCAGATAAATAACTGGTTCATAAATCAAAGGAAAAGGAACTGGCATACTAACCCCTCATCA GCTACTAGCACCAAAACCAAGCGCAAGAGTGCAGGCGAAACCAGTAACCAGAGCTTCATGTGA
Protein sequence (LotjaGi4g1v0282700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAFHDHHLQHEIAFQRFAEEQELSENRDMPPPQPTWLNAQQRQQNFMHLQPETSTAEKSGGGGEDLREYKADILGHQLYE QLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVLEKYSALGSNHRVVDEKELDQFMTHYVLLLCAFKEQLQQHVRVHAMEA VMACWDLEQSLQSLTGVSPGEGTGATMSDDEDDQAESNANLYESSMDGADSLGFGPLVPTESERSLMERVRHELKHELKQ GYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSS ATSTKTKRKSAGETSNQSFM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 340 | 340 | 3.1E-163 | – | |
| PANTHER | 1 | 340 | 340 | 3.1E-163 | – | |
| SMART | 67 | 111 | 45 | 3.2E-15 | ||
| Pfam | 69 | 110 | 42 | 1.4E-16 | ||
| SMART | 120 | 176 | 57 | 6.1E-26 | ||
| Pfam | 125 | 175 | 51 | 2.6E-19 | ||
| MobiDBLite | 176 | 196 | 21 | - | – | |
| ProSiteProfiles | 233 | 253 | 21 | 9.969 | ||
| SMART | 233 | 254 | 22 | 6.1E-4 | ||
| Pfam | 233 | 254 | 22 | 7.7E-7 | ||
| ProSiteProfiles | 253 | 316 | 64 | 11.564 | ||
| SUPERFAMILY | 255 | 319 | 65 | 8.98E-16 | ||
| SMART | 255 | 320 | 66 | 1.8E-10 | ||
| Gene3D | 255 | 333 | 79 | 2.4E-22 | – | |
| CDD | 256 | 317 | 62 | 6.4784E-11 | ||
| Pfam | 273 | 312 | 40 | 3.9E-18 | ||
| MobiDBLite | 310 | 340 | 31 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi4g1v0282700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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