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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0282700 |
| Transcript ID | LotjaGi4g1v0282700.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Homeobox protein knotted-1, putative; TAIR: AT5G25220.2 homeobox protein knotted-1-like 3; Swiss-Prot: sp|P48000|KNAT3_ARATH Homeobox protein knotted-1-like 3; TrEMBL-Plants: tr|V7CDZ8|V7CDZ8_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0282700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:65462879..65469246) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCTTTCCACGACCATCATCTCCAGCACGAAATCGCGTTCCAGCGTTTCGCGGAGGAGCAAGAGCTATCAGAGAACAG GGACATGCCGCCGCCGCAGCCGACGTGGCTGAACGCTCAGCAGCGGCAGCAGAATTTCATGCACCTGCAACCGGAGACTT CGACGGCGGAGAAGAGCGGTGGTGGTGGTGAGGATTTGAGGGAGTACAAAGCTGACATCCTCGGACACCAGCTTTACGAG CAGCTGTTATCTGCTCACGTTTCTTGCCTGAGAATTGCGACGCCGGTGGACCAGCTTCCGAGGATCGACGCGCAGCTTCA GCAGTCGCAGCGCGTGCTGGAGAAGTACTCTGCTCTTGGGAGTAATCATAGAGTGGTGGATGAGAAGGAGCTTGATCAGT TCATGGTTTGTCCATCTTAAACTCTCTTCTTCTTCTTTTTCTACAGTAATCAATTCTGTGTGTTTCCTTGAATCACAACT ACTTTAATTTTAGTTTAATTTAATCAATTTAATAGAGTAAGAAGAATACTAGCTAGCTGAAAGAATCTTAATTTACAAGT CCTTGCCACTTAATATGCCTTCATTTCCACTACTTTGTCAACCCTCACTAATGTCTTTCTTATGTTCACGCTGCTTGTTA AATCAGAAATATCAATCATGACTTCTATATACTCTTAGAGGTTAGTTGGTTTAGCACATGAAAACCCTATAATCACTTGA AGATAAGTACAATAGTTTTGGAGTTTCATGCTTTATTTTGTGAGTTCACTGGGAAAATGTTTCTTTCACACCTCTATAAG AGGTGGAAAGGTGGAAAGAGGTGGAATGAGGAGAGAGATTAGAAGGAAAAAAAAAAGTATAAGAGAGAAAGTATGAGATG TGATAGATAATAAGATGAGATAGATAAAAATAAAAATAAGTGAAAATGAAATGTTTAAAATATTGGGTGTGTATATATCG TTACTGAGTTCACTGGCAATTCAAACAAGTTATTACATTTTTACAAAATCACTTATTGCTTCTTCCAAGTTCTTTTTTAT TTTTTGGTGGGTTTCCAAATACACCAAATTTTTTGAGCTTTGCATAATAACTTTAATCTATTCACATTGATGTTTTTGTT TTCTTCTATTTCAGCATACTTTTTTTTCTACCACATTACCTATCATATATCTCATTCTTTCTCTCCATAAAGTTAATTTT GAGTGGTATAAATGAGTTATATTTATTTCTAAAATATTCACATGCATTTTCTCTTTCATCTCATTTATATTTACTTTTTC CCCATATTTTTCTTTATTTTCAATGCATTATTCATCATATCAAGTTTCTCTCATCTATTGATATCTTCGGTGGCTATGAG GTGAAATTGAATGTGAAGATAAGGTTTAATAATGCGTGCATCATTTTGAGACATCATTTATTATTTTATCTCCTTTTCGA TCACATCATATATATATATATCACACTTATCACTTAATTCTTCTCTTTTCTTGTCTTTGTCAAGTGGTCTACATGGTGCT TTATTAATTAGATTAAAAATCAGTGTTAACTTAAAAGATTAACAGTAATACTACTGGTTAATTTTGAACTTTAATTTTTG TGATGGATGGTAGTACGAGGCATTTTGGGCCAGTAAAAGTGAGTGAATCTGATTTGTCCAGTTGAGGGTTGTGTGACTGT GAGGTGTTCCTCCCTTCAATAATGCAAAGGCCTTTTCAGAGTGCTTTATCGAATCTTTCTGTTAATGGAGTCTTGGCCTT CCCACTTCTTTTTTTCTCTTTTTGCTGAAACCTTGATGGGTCAGTTCTTCAATTCTTGCAGAATATGTTCTTCTGTTGAA CCTCTCATGATCAGTTTTCTCAACCTTTACTCCCTCATCTCTGTACGTTTCTGGCATCTTGCCTGCCAAAACTAGCATAA TGTGAGGATTACAGATTCTGTACGTAAATACGTAATAATATTTGGCTATGGTTGTCCTCAAGTATGTATTTCAGTATATG GCACTGGCCAGGCCGTGTACAGACATTTTGGGGCCTTAGGCGAAAATGTAAAAATGACTTTTTTTTACAAGAATTTTAAA GAGACTTAGTATATTATATAAAGTATAAATTTTTATATTAATCGTCTAGCTTTTTAAGCTGCACCATGTTGAGATTGAAT TAATTTTTCGACTTCTTAGCTGCACTAAGTTGAGAATAGAGATGAAGGGAAGGAGATTTTTTTTGTGATAAACCAGAAGA AGTGTAAGCGTTTAAACAATGGAGAGAGTGAAAGATTGAGAGATAATTGGAATAAATTAAGGGATAATTTTTTTTTTATT TTTTGAGATAAATAAATATTTTAAATTATATTAATGATGAAATTGAATAGTTTTAAAAGAGATGATAATATTTCAAAAAA AAAAGAGATGATAATATTTATATAACTTTCCTTTTTAATTGGCTAATTTTTAAGGAAGAGAAAAGATTCCTATTTATTTC ATTTTAGTCTACTATGAGTATTTATTTTTGGTAGGCATTTCCAATATATCTAATATATACTCTATCAATCAGTTTTTTAT ATATATCACCCGTCCCAAATTTCAATTCGGCATTATATATCCATTACGCTATTTGTTTCCTTTTTTTTTTTTTGTCAAAT CTGTTTGATTTCTTACGCTTCTAATATGCACCTTGGGTTTTTTTAACCAAAAATTTTTGGACCTAATTTTTTTATGGGGC CTTAGGCAGCTGCCTTTTTGGCATAAAGGCTTCCACGGCCCTGGCACTGGCGAATCTATTAATGCACAAATCAAATCAAC TCTAACTTGATGATTTTTTTCAACATTGATTCTGAATGTCCTATTTACACCGTTGTGTAGACTACTTAGTGTCATGTCAC GTCGTTCCTCCCTGGCTGCATTGTGTAGAAATTGAATGTAGCTGCATTTATAGGGGAATCCGAGCTTAAGTTAGAATAAT GGGTTAATTGCAGTTTTGCTCCCTCATCTTTTACCTATGTGTGATTTACATTCCTCATATTTAAAATGAGTGAATTTAAT CCCTCATGTTCCAATTTGTGAAAATCAGCTCCTTCCGTTAAGTTGTCATCCAATTTCAGACGGAAATCGTCTATGTGGAC GATATTAATGACGTGGCTCTGACATTACGTGCCACTGGGATACCACGTCATCTATATTTTCTTTAAAAATAATTCTTTTT CCTTTAATTAAATTTTTTTTCTTTTAATCTTTCATCTTCTTCAACCTTCCTGTTTCATCTCTTCGTTAAACACCACAGCA CCCCCACCACCATTCCCTTCTTCTTCTTTTCTCTTCATCCAACCACCATGAAATCAAATTTGAATCTCACACCATTAAAC CCACTGTCACTGAATTAAACCCAGGCAACCCAGAAAAAAGTGAATCGCAGGGGAAGAGGGGAACAGGATGAAGCTAAAAA CATGAATCTGAATTTCGTTTCTGGGATGGTTCCATCTTGAAGCTACAAAGGAAATCCCAAATCCCATCCTCACAATCGAT CAACTCCTCCAGTCCCAACGGTCTCACCCTCAACGTCGTCGCGTCGTCTTCATCATCAACGCGTGGGATTTGCGAAAGTG GGTGAGGGTTGATGACAAGGGGTTTGCGTCGCGGGTAGGGTCGATGGCGAAGAAACGGTGGCGTGATCGACGATGTGGGG AAGAAGGTGCCGGCGCTTGCTCTTACTCTCGTGTGAGATCGGTGGAGTTCGAGGTCAAATAGGACGAAGAGGAGAAGGGC TCTCTGCAAGGGAAGGGAAATCGAAGTGCTGGTTAATGTGGAGTGCCTGAGATCTGGGTTGAATCTAGGGTTCAAATCTT GTGCATTTGTATCAAGTTTTAATTTTTGGTTAGGAATTTGATTTGGTGGAAGATGGTCATGGAAGATGAAGCAGAACCAT TTTCTGGGTAGCAATCTGATTTGGGATTATGGTTAAATGTATTAACCACTATCCTCAATTTTATTTTCCTTTTCTCTTTT TATTTTTTACGGTTAAAAACAGGGGTGCAGGTGTAAATAGGAAAAAAATGTGTAAATAGCAAGCCACGTCACCGAGCTCC GTTAAGTTTTAAACAGCTCTCTAACGGAAGGAGTTGATTTTCACAAATTGGAACATAAGAGATTAAATTCGCTCATTTTA AATATGAGGGAGGCAAATCGCACATAGGTTAAAGATGAGGGAGCAAAACTGCAATTAAGCCTAGAATAATCCTGTGTCAG TTCATTTACGCGCTTTGGTGATAGACATGTAATAGTAATATTTTTATAAATATAGTTTTTTTTTGAAAACTATAAATATA GTTAAATCAGTGTAATATTTAATTAATGTTGTTCAAGCAATTTATTTTGTTTTAAGTTTGGCTTTTTGGAGTTTGACTCT CTATTCATGTTATAATCCTTTTTGGCCCTCTTAACTTGATTGTTTGTTACTTTCTTTCTAGGGAAAAATGTCCTTATTAA TTACTTCCATGTTTCTGAAGGTCTTTAATTTATGAGTTTTGATACTAATTAATTTATTTGTTGTAGACGCATTACGTTCT GTTGCTGTGTGCCTTCAAAGAACAATTGCAACAACATGTCCGTGTTCATGCTATGGAAGCAGTGATGGCTTGTTGGGATC TCGAGCAGTCTCTGCAAAGCTTGACAGGTAAAATTCTTAATCAGCATCATCATAAAAATCTTCTCTCCATTTCTTTTTTT AATTATCACATTAACATTGCTAATATATAAAAGAGAAAAAACTTATCACACTACAAATAATTAGAAAAACTTAATCCATT GATACTCAAATCAACAAACATATCTAAAGGTAATAAATAAATAAACATTTTAAATTTGAAAATGTCAAAATTAATTCTTT TTTTTTGAAATAGTTAATTTAAATCAAAGTAGCTTTATAAAAATATAAAAAAATCCAAAGTAACATATTCTATGGGTGTT TGGTTATCTTTGTTACATGCGTGGATGCTATTATGCTCAAACTACAGAAGAGATAAAAGCACTATATATCATGACATGCA AAAGAGCCTGGTCACCTTATAATCTCATTCATACACGAAAGAAGAATAAAAAAAAGCTCTAAAAATGCTCAACTTGGGTT CAAAGAGTTAAAACACGTGATCATGTGTATCATTTTTTTTTCCTCCACTTGTATATTAATCCTGAAACTTTGACTTTTAA AATAATGTGATGATAATAATTTTGAGTATGGTGTAAAATAATAATTCAAAGCCTATCGACCAAAATTAACGGAGAATAAT GATATAAAAAATTAAAGAGCATATCGTAAATAACATGTATTGAATGTTAGTTGTAAAAATAAGATTCATGGGGATCATGT TCGGTCCATCATATAACTACCCAAAATTAAAGTGTAAAACAAATTAGATTTGGCCATCATTTCATCTTACCTAACATCAT ATATGTTCACATCATGATTAAGATTCAACTTATTATATGAGCATACAAAATTGCTGGGAGTGATCATTTATATGGTTAAG AATCAAACTAACTAAATGATATGCATGAGCAGGTGTATCTCCAGGTGAAGGAACAGGTGCAACAATGTCAGACGATGAAG ATGACCAGGCAGAGAGCAATGCCAACTTGTACGAAAGCAGCATGGACGGTGCTGACAGTCTTGGCTTTGGTCCTCTAGTC CCCACTGAGAGTGAAAGGTCTTTGATGGAGCGAGTCAGGCATGAGTTAAAGCATGAGCTCAAACAGGTAATCAATCAACT TGGAAATTTTTTGACAATTAATTTTGAAGTCTAAACCAATTCTAAGAGGAAACTTCTGCAAGTAGCTTCTAGGTTTTAGA ATTGATTCCGATGAAAGAAAAACTTATCCAAACATACTTTGTAAAAACTGATCCTAACTACATAAAGTTATACCTCTTTC TTATATAGGGATACAAGGAGAAGATTGTGGACATAAGAGAAGAAATTCTACGAAAGAGGCGAGCCGGGAAGCTCCCAGGG GACACCACATCTCTTTTGAAAGCTTGGTGGCAAGCACATTCAAAATGGCCCTACCCTACTGTAAGTAATTTGGACTCATG ATGAATATTTAACTTCTTTTTTTGAAATCAAATATTTAACTTTATATGTACACAAGTTTTGCTATATATGTTGGTTGCTC ATGTATACTTTGGGTTGCACTTGTGAATATGAATGTTTTAGGAGGAAGACAAAGCTAGATTGGTGCAGGAAACAGGGTTG CAATTAAAGCAGATAAATAACTGGTTCATAAATCAAAGGAAAAGGAACTGGCATACTAACCCCTCATCAGCTACTAGCAC CAAAACCAAGCGCAAGAGGTAGGCTAATAGATACTTTCTTCCTTGTGA
CDS sequence (LotjaGi4g1v0282700.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTTCCACGACCATCATCTCCAGCACGAAATCGCGTTCCAGCGTTTCGCGGAGGAGCAAGAGCTATCAGAGAACAG GGACATGCCGCCGCCGCAGCCGACGTGGCTGAACGCTCAGCAGCGGCAGCAGAATTTCATGCACCTGCAACCGGAGACTT CGACGGCGGAGAAGAGCGGTGGTGGTGGTGAGGATTTGAGGGAGTACAAAGCTGACATCCTCGGACACCAGCTTTACGAG CAGCTGTTATCTGCTCACGTTTCTTGCCTGAGAATTGCGACGCCGGTGGACCAGCTTCCGAGGATCGACGCGCAGCTTCA GCAGTCGCAGCGCGTGCTGGAGAAGTACTCTGCTCTTGGGAGTAATCATAGAGTGGTGGATGAGAAGGAGCTTGATCAGT TCATGACGCATTACGTTCTGTTGCTGTGTGCCTTCAAAGAACAATTGCAACAACATGTCCGTGTTCATGCTATGGAAGCA GTGATGGCTTGTTGGGATCTCGAGCAGTCTCTGCAAAGCTTGACAGGTGTATCTCCAGGTGAAGGAACAGGTGCAACAAT GTCAGACGATGAAGATGACCAGGCAGAGAGCAATGCCAACTTGTACGAAAGCAGCATGGACGGTGCTGACAGTCTTGGCT TTGGTCCTCTAGTCCCCACTGAGAGTGAAAGGTCTTTGATGGAGCGAGTCAGGCATGAGTTAAAGCATGAGCTCAAACAG GGATACAAGGAGAAGATTGTGGACATAAGAGAAGAAATTCTACGAAAGAGGCGAGCCGGGAAGCTCCCAGGGGACACCAC ATCTCTTTTGAAAGCTTGGTGGCAAGCACATTCAAAATGGCCCTACCCTACTGAGGAAGACAAAGCTAGATTGGTGCAGG AAACAGGGTTGCAATTAAAGCAGATAAATAACTGGTTCATAAATCAAAGGAAAAGGAACTGGCATACTAACCCCTCATCA GCTACTAGCACCAAAACCAAGCGCAAGAGGTAG
Protein sequence (LotjaGi4g1v0282700.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAFHDHHLQHEIAFQRFAEEQELSENRDMPPPQPTWLNAQQRQQNFMHLQPETSTAEKSGGGGEDLREYKADILGHQLYE QLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVLEKYSALGSNHRVVDEKELDQFMTHYVLLLCAFKEQLQQHVRVHAMEA VMACWDLEQSLQSLTGVSPGEGTGATMSDDEDDQAESNANLYESSMDGADSLGFGPLVPTESERSLMERVRHELKHELKQ GYKEKIVDIREEILRKRRAGKLPGDTTSLLKAWWQAHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSS ATSTKTKRKR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 329 | 329 | 5.4E-157 | – | |
| PANTHER | 1 | 329 | 329 | 5.4E-157 | – | |
| SMART | 67 | 111 | 45 | 3.2E-15 | ||
| Pfam | 69 | 110 | 42 | 1.4E-16 | ||
| SMART | 120 | 176 | 57 | 6.1E-26 | ||
| Pfam | 125 | 175 | 51 | 2.4E-19 | ||
| MobiDBLite | 176 | 196 | 21 | - | – | |
| ProSiteProfiles | 233 | 253 | 21 | 9.969 | ||
| Pfam | 233 | 254 | 22 | 7.4E-7 | ||
| SMART | 233 | 254 | 22 | 6.1E-4 | ||
| Gene3D | 252 | 328 | 77 | 4.5E-22 | – | |
| ProSiteProfiles | 253 | 316 | 64 | 11.564 | ||
| SMART | 255 | 320 | 66 | 1.8E-10 | ||
| SUPERFAMILY | 255 | 318 | 64 | 8.13E-16 | ||
| CDD | 256 | 317 | 62 | 9.0398E-11 | ||
| Pfam | 273 | 312 | 40 | 3.8E-18 | ||
| MobiDBLite | 310 | 330 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi4g1v0282700.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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