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LotjaGi4g1v0286200.1

Overview

Field Value
Gene ID LotjaGi4g1v0286200
Transcript ID LotjaGi4g1v0286200.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description tRNA pseudouridine synthase A, related protein; TAIR: AT1G20370.1 Pseudouridine synthase family protein; Swiss-Prot: sp|Q6CC39|PUS1_YARLI tRNA pseudouridine synthase 1; TrEMBL-Plants: tr|G7JGU0|G7JGU0_MEDTR tRNA pseudouridine synthase A, related protein; Found in the gene: LotjaGi4g1v0286200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:65831336..65834462) extracted from Lotus japonicus Gifu genome v1.2.

GCCCAAATATCAAAAGAGAAGCAGCATCTATCGTGCTGGAAGGAGAGAACTCACTGGTTAAACGAGGGTTTAACGTTGTT CGTGTTTCTTTCTCTCGAAGCACGGTTTCATTTTGCAGTTCCACCACCTCCACTCCACCACCAGAAACCGTTCTCTCACT TTTCTACCCTCTGCTCTGGTAACACTTCTTCTCTGTATCTTTGCTTCCCTCTCATTCTTTTGTTTCAAATGTAAACCTTA GCTGCCATTTCTCTCAAACTCTCCAAACTGGATTTCAAGTTTCATCAAGTTTTTATATACTTTTGCTCTGTTAGATTGTT TGATTATTCACTAGCCCTTTGTTTTTTATGCATAGATGTGCTCTTATTAGATCTATTTATATTTTGCATCTACTTTATGT TTCAATTTTAAAACGATTTCACACCCAAGAATACATTGGTAGTAAGAAATTTGGAGACATGTGACTAAGTAGTTAGCTGA TAATAGATTTTTGTAGCTTGTATGCTTATTAATTCATTCATTGTTTCTCGAACTTGCAAGCTGTGTTGTCAAATAGCGGC GCTATAGCGTAGCGCTCTGAGGGCTCAGCGCACTATTTGCCGCTCTGAGGGCTTGACATAGCGGATTTTTGGCTTTCCAC TATTTTCCGCGATCCGCTATTAACAACACTGCTTGCAAGATGAGAAAAAAAAAACCCAAAAACTGGAGTTAACAGTTTCA GATGAATTCATTAAGAACTGATGAAAGAGAAATTACATCGCTAGCTATGTGTAGAAACTAGAAATGTTTTGAAGGAATCT CTAGTGTAGCTTAGGGTTTGTTTATTGTTGTATTAATAAATTAAACTGTTGTTTAGGTTTATGCATCGTGCTGATGTATT TGGTTTCGCCATAGTTGTTCCCTGGCCTGGTCCTTTTTCCAGGTTTTTGGGCATTCTGGGTTTTGAATTGCTTTCTACGG TTTTTCCAGCAATATTCTTATCACTTCTAAAAAATGGAAAGTTCAGATGCAACACTGACTAGTTCATCCCTGCCACCACC ACCTCCATTAGCTGCAGAAGATCCAGAGCCCAAGAAGCTGAAGATGTCTACGGCTACTTCCGATGATGAAGAATGCACAA CTGCCACAGGCACCAAGATAAGACCCAAGCGTCGCAAGATAGCTATTTTCTTTGCTTACTGTGGTGTTGGCTATCAGGGT ATGCAGAAAAACCCCGGTGCAAAGACCATTGAAGGTGACCTAGAAGAAGCTTTATATGCGTCTGGAGCTGTCCCTGACAA TGATCGTGGATATCCTAAACGGTATGACTTTGCTCGCTCAGCTAGAACTGATAAAGGGGTTAGTGCTGTTGGTCAGGTTG TCTCCGGCCGGTTCTATATTGATCCACCTGGCCTTGTTGACCGCCTTAATTTAAATCTCCCCCCTCAGATCCGGATCTTC GGTTTCAAGCGTGTGACAGCTTCCTATAGTGCCAAGAAGTTCTGTGACAGGAGGAGGTATGTCTATCTCATCCCTGTGTT TGCCCTTGATCCATGTTGTCATCGTGATAGAGAGACTGTCCTGGCTAGTTTGGGGTCTGAAAATGAACTTGTTAAGTGTT TGCCGTGTTCTGAGAGAGGCCGGAAGGTGATAGGGTTAGTTGGTAATGGTAAACATAATCTGGAACTTGAAGGTGTGGAT GTTGGGGCTGGTCTCTCGTCAAACAGAAATGACACGCTTACCTCTGGAGTTACAGAGGATGCGGCGGATCCTTTAAGCAA AGGTCATAATCAGTTAAATGAGGAATTGAGTAATGATAATGAGGGTAAGGTTTCAGCGGATGACATGAAAACAAAAACTG ATCTTGAGGCTGTAGTTTCTGGTCAGGATGAGGGTACTCCATTGAGTGGTGGATCTGTGAATAATTCAGGAATTATTGAG GAAGAAAAAATGAATGGAGAGGATGAGCCTAACCAAGGAAGTAGATTCTGTTATGGCGAGAAGGAGAGGGAGAGATTTAA CAAGATTTTGAAGTACTATGTTGGGACTCATAACTTCCATAACTTCACCACCAGAATAAAACCTGAGGATCCTGCTGCAC AACGCTTCATTATCTCGTTTGACGCAAACACCACTGTTGCAATTGAGGGCATGGAATTTGTGAAGTGTGAGGTTGTTGGG CAGAGCTTCATGCTTCATCAGATCCGGAAGATGATGGGGCTTGCAGTGGCAATCATGAGAGATTGTGCACCAGAGTCACT TATCGATAAAGCTTTGCAGAAGTGAGTCGTGCTAGTTTAGTTTGTGTTGTCTATAAATTTCTATTTGAAATTCAGCGTGA TTCTCATAATCTCATCTGATATATTTTTTACTTTTAATCTTTTCTCCTAAATTTAGGGATGTTAGCATCATAGTGCCTAC TGCCCCTGAAGTTGGATTGTATCTAGATGAGTGCTTTTTTACTTCTTATAACGACAAATGGAAAGATACCCATGAAGAGG TGTCAATGAAAGCGTATGAGAAAGAAGCTGAAGACTTCAAAATGAAATACATATATTCTCACATTGCTTCCACAGAACGA AAGGAAGGAACTGTCGGTCTTTGGTTGCATTCTTTGAACCATAGAAATTATCCAGATCTGCGTATCCTTGATGAGGAAGG CATCACCGATAACAAGAGATCTGAAACTGAAATTGTGACTGAGTGAAAATTTTCCTACCATTGAGTGTAGAACTATTTCT TTTTGATTGATTTATGGCTTTATGCTACAAACTTTGACTACTACAAACTCATTATATCTACAATATACACAAGCGGTGTC TGTTTGTGTTCATTACATGGTAAGAGAGGAAAAGGAAATGAAAGAGTATTTTTGTTATACTCATTTTCATTCAATATGAT TTTTCTCGAGGTTGAAACATAAATGACTGATGGTCATTCACATGTGCTGCAGATTCCTTTGTGAATCAATCACCTGATGA TATGTATTTTTTTTGCAACTTCAGATATATTTTAGTTGATATGACTCGTGAATTTTGCCCCATTTTTTGGTACATCATAT TTTATATGTATCTCTGATATTCTATTTATAGCACTTGCAAATTTCATCTACTATTCATCCATCTTTTAGGTTGATCTACA TTGTGTT
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0286200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAAAGTTCAGATGCAACACTGACTAGTTCATCCCTGCCACCACCACCTCCATTAGCTGCAGAAGATCCAGAGCCCAA GAAGCTGAAGATGTCTACGGCTACTTCCGATGATGAAGAATGCACAACTGCCACAGGCACCAAGATAAGACCCAAGCGTC GCAAGATAGCTATTTTCTTTGCTTACTGTGGTGTTGGCTATCAGGGTATGCAGAAAAACCCCGGTGCAAAGACCATTGAA GGTGACCTAGAAGAAGCTTTATATGCGTCTGGAGCTGTCCCTGACAATGATCGTGGATATCCTAAACGGTATGACTTTGC TCGCTCAGCTAGAACTGATAAAGGGGTTAGTGCTGTTGGTCAGGTTGTCTCCGGCCGGTTCTATATTGATCCACCTGGCC TTGTTGACCGCCTTAATTTAAATCTCCCCCCTCAGATCCGGATCTTCGGTTTCAAGCGTGTGACAGCTTCCTATAGTGCC AAGAAGTTCTGTGACAGGAGGAGGTATGTCTATCTCATCCCTGTGTTTGCCCTTGATCCATGTTGTCATCGTGATAGAGA GACTGTCCTGGCTAGTTTGGGGTCTGAAAATGAACTTGTTAAGTGTTTGCCGTGTTCTGAGAGAGGCCGGAAGGTGATAG GGTTAGTTGGTAATGGTAAACATAATCTGGAACTTGAAGGTGTGGATGTTGGGGCTGGTCTCTCGTCAAACAGAAATGAC ACGCTTACCTCTGGAGTTACAGAGGATGCGGCGGATCCTTTAAGCAAAGGTCATAATCAGTTAAATGAGGAATTGAGTAA TGATAATGAGGGTAAGGTTTCAGCGGATGACATGAAAACAAAAACTGATCTTGAGGCTGTAGTTTCTGGTCAGGATGAGG GTACTCCATTGAGTGGTGGATCTGTGAATAATTCAGGAATTATTGAGGAAGAAAAAATGAATGGAGAGGATGAGCCTAAC CAAGGAAGTAGATTCTGTTATGGCGAGAAGGAGAGGGAGAGATTTAACAAGATTTTGAAGTACTATGTTGGGACTCATAA CTTCCATAACTTCACCACCAGAATAAAACCTGAGGATCCTGCTGCACAACGCTTCATTATCTCGTTTGACGCAAACACCA CTGTTGCAATTGAGGGCATGGAATTTGTGAAGTGTGAGGTTGTTGGGCAGAGCTTCATGCTTCATCAGATCCGGAAGATG ATGGGGCTTGCAGTGGCAATCATGAGAGATTGTGCACCAGAGTCACTTATCGATAAAGCTTTGCAGAAGGATGTTAGCAT CATAGTGCCTACTGCCCCTGAAGTTGGATTGTATCTAGATGAGTGCTTTTTTACTTCTTATAACGACAAATGGAAAGATA CCCATGAAGAGGTGTCAATGAAAGCGTATGAGAAAGAAGCTGAAGACTTCAAAATGAAATACATATATTCTCACATTGCT TCCACAGAACGAAAGGAAGGAACTGTCGGTCTTTGGTTGCATTCTTTGAACCATAGAAATTATCCAGATCTGCGTATCCT TGATGAGGAAGGCATCACCGATAACAAGAGATCTGAAACTGAAATTGTGACTGAGTGA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0286200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MESSDATLTSSSLPPPPPLAAEDPEPKKLKMSTATSDDEECTTATGTKIRPKRRKIAIFFAYCGVGYQGMQKNPGAKTIE GDLEEALYASGAVPDNDRGYPKRYDFARSARTDKGVSAVGQVVSGRFYIDPPGLVDRLNLNLPPQIRIFGFKRVTASYSA KKFCDRRRYVYLIPVFALDPCCHRDRETVLASLGSENELVKCLPCSERGRKVIGLVGNGKHNLELEGVDVGAGLSSNRND TLTSGVTEDAADPLSKGHNQLNEELSNDNEGKVSADDMKTKTDLEAVVSGQDEGTPLSGGSVNNSGIIEEEKMNGEDEPN QGSRFCYGEKERERFNKILKYYVGTHNFHNFTTRIKPEDPAAQRFIISFDANTTVAIEGMEFVKCEVVGQSFMLHQIRKM MGLAVAIMRDCAPESLIDKALQKDVSIIVPTAPEVGLYLDECFFTSYNDKWKDTHEEVSMKAYEKEAEDFKMKYIYSHIA STERKEGTVGLWLHSLNHRNYPDLRILDEEGITDNKRSETEIVTE
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 45 45 - –
PANTHER
PTHR11142
28 508 481 1.9E-156
IPR001406
PANTHER
PTHR11142:SF4
28 508 481 1.9E-156 –
Gene3D
G3DSA:3.30.70.580
44 164 121 2.0E-35 –
SUPERFAMILY
SSF55120
53 454 402 9.78E-62
IPR020103
CDD
cd02568
58 444 387 2.94269E-104
IPR041708
MobiDBLite
mobidb-lite
234 275 42 - –
MobiDBLite
mobidb-lite
234 248 15 - –
Gene3D
G3DSA:3.30.70.660
307 508 202 4.7E-65
IPR020095
Pfam
PF01416
339 444 106 4.6E-14
IPR020097

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0001522
Biological process Pseudouridine synthesis The intramolecular conversion of uridine to pseudouridine within an RNA molecule. This posttranscriptional base modification occurs in tRNA, rRNA, and snRNAs.
Subterm of
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0009451
Biological process RNA modification The covalent alteration of one or more nucleotides within an RNA molecule to produce an RNA molecule with a sequence that differs from that coded genetically.
Subterm of
GO:0009982
Molecular function Pseudouridine synthase activity Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5.
Subterm of
GO:0031119
Biological process TRNA pseudouridine synthesis The intramolecular conversion of uridine to pseudouridine in a tRNA molecule.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0286200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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