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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0298400 |
Transcript ID | LotjaGi4g1v0298400.2 |
Related isoforms 6 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | ATP-dependent dethiobiotin synthetase BioD; TAIR: AT5G57590.1 adenosylmethionine-8-amino-7-oxononanoate transaminase; Swiss-Prot: sp|B0F481|BIODA_ARATH Bifunctional dethiobiotin synthetase/7,8-diamino-pelargonic acid aminotransferase, mitochondrial; TrEMBL-Plants: tr|K7LWW0|K7LWW0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0298400 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:67242014..67248308) extracted from Lotus japonicus Gifu genome v1.2.
ATGTTCCGCTTCCCCTCCGTCCTTCTCTCCCGCCGTCACTGCCGCCGAAAACTATCCACCACCACCACCTCGCAACCACT CGAGCTCCCTCTATCCCACCCTATCTACCTCATTTGGGGCTCCAACACCGGCGTCGGCAAAACCCTAGTCTCCGCCGGCA TCGCCGCCTCCTCCCTCCTCTCTTCCCCCTCCCCCGTCAAATTCCACTACCTCAAGCCCCTCCAAACCGGCTTCCCTTCC GACTCCGACTCCCGCTTCGTCTTCAACAAGCTCTTCCACCTCCGCAACCGCACCACCCCCCGCATTGCTCTCTCCGCCTC TCTCCGCGTCCTCAATGCCTCCCGCGCCGCTGCGACGGAGAATGACCAGACTTCTTTTTCAGCTGACGGAGAACGTTCCG CCTCCTCGGAGCTGGTTTGCAAGACGCTGTACGCGTGGGAGGAGGCCGTGTCGCCGCATTTGGCCGCCGAGAGGGAAGGT TTCGTCGTCAAGGACTCGGTGGTGCTGGAAACGTTGCGGAGGTGCTTTCGAGACGTGGTAGAAAGTGGCGTAGGGAAGGA GAGGTCGGAAGTTATGTGTATTGTGGAGACCGCTGGTGGAGTTGCTAGCCCAGGTCCTTCTGGGTCACTTCAATGTGACT TGTATAGGTGTGAATTTCAACCTTTCTTGTCATTTTGTTCAAACACTTGCAGATTCAGCTTTGATGAAACGATTTTTAGG TCTATGTATTTAGTTAGGTGCCTCAAATTTTGTTGAGATGCTTGCCCCTTTGTTTAAATTTGATTATCTTTTGCTAACAA TTCATGGACTGTTTGATATTTGCTACCCTTTGTCAGAGTGTAGCCATGAGAACTCATAGACATGTAGGCTAAGGAAGCAA ACATATAATATGTGGTAGAATAGTGGTCTATATGGCATAGTTCAAATCTTATTCTTTTGTTGAATCTGTTTCTTCTGCCA TTTTTGGTCAGGCCGTTTCGTATTCCTGCAATTCTTGTTGGAGATGGGCGGCTGGGAGGAATTTCGGGAACAATATCAGC GTACGAGACCTTGACGCTTCGGGGTTATGATGTTGCTGCTGTTATTTTTGAAGATCACGGCCTTCTCAATGAGGGTCCCC TATTGTCTTATATGCGAAACAAGTAGGCTTGATTACACCAGTTATTTTGTTCTCTTTCTGCTTGTGACATGAAAGAATTT TTGTAGTAAAGAAAAGTTAAGTTTAAGTGACAAGCTTTAAAATTAATGTTCGAAATTGTTTTTATTTTAAGCACTGGATG TTTTAATTTCAGGCATGGTGAATGGTTTCAGCAATATTTTTATTTTTTTTCTAAAGTTTTTATTTAAATTCATTTATTTT ATAGGTAACAAACGAGCAACACTAAAATCTTGTTGGACAGTCTGCATAACTTCATTTTGAGCTAAATGTATGATAGAAGA ATTAATTTTGTCTGTTTTGCTTCTGGAAGACTGAGTTTTCTGTTTGGGAAGATTTATCCTATTTGGCTTATAAAAAAACT TGTAAAAATGAATTTTGCTTGAATAATGTTATACAATTACTTGTGCTAAATCACCAAGAAAAAATATTTTTTGTGTTCAA AATTGCATTTGTAAAGTGTGACTAAACGTCATGCATGTCAATGTGGGTTTGAGGTTTCAACTCATAAGAATTCTTGCTAA TGGGTTGCCAAGTGTTGGTTTGAAAATTTTAGGGTCGGTTTAATTTCCATTTGTATTTCCTTCCTTTAGTTTTATTCGCA ACAATGTCCCATTGTTTTAATTGTTTCCTGTTTTCAAAGTCTTGTATAGGAAACAACAAGAACTGCATTTTATTTTTCTC ACTGTTTCCTAGCCAAAACTATGAAAATAAAAAATGAAGTGAAAACAAGGGGGCATTGTTGCAATTAAAACTAAAAACTG GAAATAGAAAGTAAACAGGCGCTTCATTTTCAGCACTGAATTGAGTTTTACAAACACACCAGTGTCTCTCTCTCTTTCTC TCGCTTTCTGACACTTACATATTCATATATACATCTAGAGGTCTTTTTATCTGCATTTACATTTCAGCTAATCAACTATC TTTATGGTTTTGACTTTTCTTCTGTTTTGCGGTATGATTACTATGTGATTATATACTATTGTTGCCATCTTAATGCAGGG TTCCTGTTCTAGTGCTACCACCTGTTCCAAAAGATCCATCAAATGACTTAATGGAATGGTTTGATGGTTCCCATGGTGTA TTTAATAATTTAAAGGAAATAATGCTATCTGCTTATTTTGAGAGAATTAAAAAATTGCATGACATGCCAAGAAAAGCAAG GGATATCATCTGGTGGCCTTTCACACAACACAAACTTGTACCTGATGGAGGGGTCACAGTAATTGATTCACGCTGTGGTG AGAACTTTGCAGTCTTCAAGGTTTGTTTCAAGAAAAATCCTTATTTGTTCTTTTTTTTTTGATTTTTTTAGGTGTTGCAA TACAAATCTTAGTGAACTGCCCTATGTGTACAATGTTGAGCTTACTACATTAGTGTTTACGTTGGAATTAGATTCAGGAG TTCTATAGAATCTTCATTCATGCTTTTTCATGTGCGGACACTTAGATGACACATCACCATTTTTTTATAGGCTCAGAAGA CAGAAGTCATAGCACCATTATTTGATGCATGTGCAAGTTGGTGGACTCAAGGACCTGATGCTATTTTGCAGGTCATCCTC ATTTTTTGAAGCTTTTAATTTTGTTATTCAAACTTTTAATATTCATATTGGCTATTTGATTACCAACAAGGTGTTGGTCT AGTGGTTGGCAAGCTAGATCCCCGGGAAAGTCATTTGTTGGGAGGGACTACCACCGTTTCCCGAACAGGTTAACATCTGC AAAAACAAAAAATATTGGTTATTTGATTGAGGGACATGTTCTGAAATATGACATTCTTCCTTTCTTAAACTGTTGGATAT GCTTGTAAAAATATTCTGTCTATGTTTTTAATTTATAATGCTTAACCATATCATTTAACTCATCAAATGTCCTGCTTTAA TTAGGCAGTCAAATATCCAATGTAACATTTAGTGAATCTTTATACTTGGATCGATGATAACATATAAGTCGAACATGTTT GCCTGCTTATATAGACCTGGATGCCCCTTTATGATAGCATCTCTGAAGTTTTCCTTTAATGCTATCATTCGATTTAGGTA ATTTCAGGCTGAGCTTGCTAGGGAGATGGGATATACTGCTGCACGATTTGGGCATGTAATGTTCCCAGAGAATGTTCATG AACCAGCCTTAAATTGTGCTGAGCTTTTGCTTCAAGGCGTGGGGAAAGGTTAGTGTGCTGTTTGAATATTCTTCCATATT CAAATCAATTTTGTTTTTGTTTTATCTAATAGGATTTTACCAAGGTGTTCCTAAAAGTTTGTATCTAATGTATGATCTGC GTTCTGGTCTTAGGGCTATTTGATCCATGAATACAATTACGTTGGTTAAACACGTGCTTTTCAGTTTATTCCTAGTTTCC TACTGCTACTTAGGGATGTTTGCCACTGGCCAGTGTTATCCCCTGAATGATAAAATATGTTATATTGTGAACAATTTGCA GTTTTTGTTAGTTATTCATGTTAATTTCCATTTCAGCTGGGTGACCGAACTAGGGTTTATGCAGGTTGGGCTTCTCGTGC ATATTTTTCAGACAATGGATCTACAGCAATTGAAATTGCTCTCAAGATGGCATTTCGTAAATTTTCTGTTGATCATGGAC TCATTCAGGATTCTGATGAGGATACCATAACTGAAAGATCTCCTGAGCTAATGGTTGGTTCCTTCAGTCCATTTGTCTTT TCAGTTTGCAGTTATTTATTTTGATTAGTTTTTGAGCAATGCATGGGAGTGAAGGCTTTGGCGCTGTGCTGTTTTGTGGT GAATTTGGCTTGAGGAAAATTTCTGTGTTTTCAATAAGTCTTATCTCATTCCCTAATTTGTTATTGGGTGGGAATGTTTT CATGGCGCACCCCCTTCTTTAATTTGTTATTTGCTTTTCTTTATTTTAGGAGGATTTTTTTTTGGTCAAGGAGGAAGGTT TTTTCACAAGAATTTTTCTAGTTTCGACACTAATTTTCACTCAAGTGGTTGGTCTTTTCATCAAGTGGTTACTTATTAGC CTGTCTTCGAACTTTGTGAACTGGTTGACAGTTGAGTGGTTAGTTATTCCTAAACTAGAATAATTTTACAAGGAATTCTT TTTTCCCTTTAAAATGAAGCCTCTGGTTTTATGCTGGCTGATAATGATCTGGAAGTATCTTTCAAATATTGTTGTGATTT GAATGGCCTCCCATGTCTTTTTACTTTAAGTGAATAATGTTGTGTATCTTTCTCAGTTGAATTCATTGATTCATGCTGTT CAAATGACAGCAACATAGACTTCACATATTCCTCCTTGCATATACTCTATATAGCAGTATAACCTTGTCTTTTAAAAAAG TAGTTTCATTCAATGAAGTACACCTCTCTTAATGCTTGTGGATTTAATTATTTCAGGTCCTCGCTCTTCAGAGATCTTAT CATGGTGACACATTAGGTGCTATGGAAGCACAGGCACCATCATCTTATACAGGCTTCCTGCAGCAACCATGGTATACATG TTTCCTTCTACTGCATACTTGAGAAATATGAAATTGGGTCTTCTGAAAACATGAGAGGATTACTATTCTCATTTTTCACT GTCTTGCTAACAAAGTTACATTTGATAGATATTGACGGAAAATGCCCATGGTCAATTGGTGGTTTTGGAATTTGGTATCC AGTTAGCATGGGCATTTATAATTCTTCATGTAAAACATTATAAAAGGTGTTGCTGGATATGCCAAAAATAGACATAAGCA GTTTTGGTTTGTTACTTCTGTTTAGCATAAGTCAGCTTGTCTATTTTATTTTAAAATCTATTGTTCATGCTTAGTATAAT TTTGTCTAAAAACCTTGTGCGAAGTTATGTTGTTATATTTTGTTTGTGAATTCTGATATTGAAAGTTGAAACTAGAGATC ATCATTATTTTGGAGCATGTTTTCCTTATATTTTCTGGACATCTGTTTGTAAATGGATACTCGTGTGAAAACCTTCTGTC CGGGAATGGATTCTATTTTTCTACACCTAACTAATTCTCATGAAACCCTTCTAAGTTTCAATTCTCAATTTCATAGGTAC ACTGGAAGAGGTCTTTTTCTGGACCCTCCTTCTGTCTCTATGCAGAACAATGCATGGAATATTTCCTTACCTAAAGGATT TCAATTGGAGAATCTGAAACTTGAAAATCTCAGTAAGTTCAAATTTCCAACTTTATTTCGTTTCTTGGTTACTGTTTGGA ATATCATCATTTTGATTTGCTGACACTCTCACAGCTTTTGCTTCTCGTGATGAAATATTTTGCAAGGGCAGGGACAAGTC TGAGCTTGCTACAGTTTATTCATCTTACATATCTAAAGTGTTATCTGGATTTAGTGGGTCGAATACTATTGGAGCATTGA TTATGGAGCCAGGCAAGATATTTTATGCTGCCTTTATTTTGCATATTTTTAAGTGTCATTTTAGTTTCACTATCTCCTCT CTAATGCTGTTGATTTTATATTTTTCCAATGCATGCATGAAGCTGAATAAGAAAAAAATAAAAGAAAGAAAGAATCATTT GCTTACTTAACACTCTTCGACATGACAATGCATTAGATTCCTCTATGTCAGCAGTAACACAATTACCTGTGTGAAATGTG ATTAAAATACTGCATTTGGGCCGTTCTAGGTCTTCCACATAGCAAAACTGTCGTGTTTGTTTTTCTTGGTTCCTGTAAGA TTACTTGTTTCTGAAGTTGGTTCAGTGGCCTTCTAGATATTCTAATTTATTTTGATTTGATTGCACCTTTTCCTGAGACT GATGATCCCATCTGATTCCTGAACTGTTCTGTAGTTATACAAGGTTCTGGTGGAATGCATATGGTTGATCCACTTTTTCA GCGTGTACTTGTTAATGAGTGTCGGAGTAGGAAAGTTCCAGTTATCTTTGATGAGGTTTTTACTGGTTTTTGGCGTTTGG GAGTAGAGGTGAATCCCTTAATAACTATTCTATTTTCTCATTTTCGATAAAATGTATTTTATATTCTTCAATTATTTGAT TTTTTTTGTTTATGTTTCTTCTCAGACTGCAGTGGAGCTAATCCATTGTGTACCAGATATAGCCTGCTTTGGGAAACTAA TGACTGGTGGGATTATACCACTGGCAGCCACCTTGGCAACAAATGATGTTTTTGA
CDS sequence (LotjaGi4g1v0298400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCCGCTTCCCCTCCGTCCTTCTCTCCCGCCGTCACTGCCGCCGAAAACTATCCACCACCACCACCTCGCAACCACT CGAGCTCCCTCTATCCCACCCTATCTACCTCATTTGGGGCTCCAACACCGGCGTCGGCAAAACCCTAGTCTCCGCCGGCA TCGCCGCCTCCTCCCTCCTCTCTTCCCCCTCCCCCGTCAAATTCCACTACCTCAAGCCCCTCCAAACCGGCTTCCCTTCC GACTCCGACTCCCGCTTCGTCTTCAACAAGCTCTTCCACCTCCGCAACCGCACCACCCCCCGCATTGCTCTCTCCGCCTC TCTCCGCGTCCTCAATGCCTCCCGCGCCGCTGCGACGGAGAATGACCAGACTTCTTTTTCAGCTGACGGAGAACGTTCCG CCTCCTCGGAGCTGGTTTGCAAGACGCTGTACGCGTGGGAGGAGGCCGTGTCGCCGCATTTGGCCGCCGAGAGGGAAGGT TTCGTCGTCAAGGACTCGGTGGTGCTGGAAACGTTGCGGAGGTGCTTTCGAGACGTGGTAGAAAGTGGCGTAGGGAAGGA GAGGTCGGAAGTTATGTGTATTGTGGAGACCGCTGGTGGAGTTGCTAGCCCAGGTCCTTCTGGGTCACTTCAATGTGACT TGTATAGGCCGTTTCGTATTCCTGCAATTCTTGTTGGAGATGGGCGGCTGGGAGGAATTTCGGGAACAATATCAGCGTAC GAGACCTTGACGCTTCGGGGTTATGATGTTGCTGCTGTTATTTTTGAAGATCACGGCCTTCTCAATGAGGGTCCCCTATT GTCTTATATGCGAAACAAGGTTCCTGTTCTAGTGCTACCACCTGTTCCAAAAGATCCATCAAATGACTTAATGGAATGGT TTGATGGTTCCCATGGTGTATTTAATAATTTAAAGGAAATAATGCTATCTGCTTATTTTGAGAGAATTAAAAAATTGCAT GACATGCCAAGAAAAGCAAGGGATATCATCTGGTGGCCTTTCACACAACACAAACTTGTACCTGATGGAGGGGTCACAGT AATTGATTCACGCTGTGGTGAGAACTTTGCAGTCTTCAAGGCTCAGAAGACAGAAGTCATAGCACCATTATTTGATGCAT GTGCAAGTTGGTGGACTCAAGGACCTGATGCTATTTTGCAGGCTGAGCTTGCTAGGGAGATGGGATATACTGCTGCACGA TTTGGGCATGTAATGTTCCCAGAGAATGTTCATGAACCAGCCTTAAATTGTGCTGAGCTTTTGCTTCAAGGCGTGGGGAA AGGTTGGGCTTCTCGTGCATATTTTTCAGACAATGGATCTACAGCAATTGAAATTGCTCTCAAGATGGCATTTCGTAAAT TTTCTGTTGATCATGGACTCATTCAGGATTCTGATGAGGATACCATAACTGAAAGATCTCCTGAGCTAATGGTCCTCGCT CTTCAGAGATCTTATCATGGTGACACATTAGGTGCTATGGAAGCACAGGCACCATCATCTTATACAGGCTTCCTGCAGCA ACCATGGTACACTGGAAGAGGTCTTTTTCTGGACCCTCCTTCTGTCTCTATGCAGAACAATGCATGGAATATTTCCTTAC CTAAAGGATTTCAATTGGAGAATCTGAAACTTGAAAATCTCACTTTTGCTTCTCGTGATGAAATATTTTGCAAGGGCAGG GACAAGTCTGAGCTTGCTACAGTTTATTCATCTTACATATCTAAAGTGTTATCTGGATTTAGTGGGTCGAATACTATTGG AGCATTGATTATGGAGCCAGTTATACAAGGTTCTGGTGGAATGCATATGGTTGATCCACTTTTTCAGCGTGTACTTGTTA ATGAGTGTCGGAGTAGGAAAGTTCCAGTTATCTTTGATGAGGTTTTTACTGGTTTTTGGCGTTTGGGAGTAGAGTTTATG TTTCTTCTCAGACTGCAGTGGAGCTAA
Protein sequence (LotjaGi4g1v0298400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFRFPSVLLSRRHCRRKLSTTTTSQPLELPLSHPIYLIWGSNTGVGKTLVSAGIAASSLLSSPSPVKFHYLKPLQTGFPS DSDSRFVFNKLFHLRNRTTPRIALSASLRVLNASRAAATENDQTSFSADGERSASSELVCKTLYAWEEAVSPHLAAEREG FVVKDSVVLETLRRCFRDVVESGVGKERSEVMCIVETAGGVASPGPSGSLQCDLYRPFRIPAILVGDGRLGGISGTISAY ETLTLRGYDVAAVIFEDHGLLNEGPLLSYMRNKVPVLVLPPVPKDPSNDLMEWFDGSHGVFNNLKEIMLSAYFERIKKLH DMPRKARDIIWWPFTQHKLVPDGGVTVIDSRCGENFAVFKAQKTEVIAPLFDACASWWTQGPDAILQAELAREMGYTAAR FGHVMFPENVHEPALNCAELLLQGVGKGWASRAYFSDNGSTAIEIALKMAFRKFSVDHGLIQDSDEDTITERSPELMVLA LQRSYHGDTLGAMEAQAPSSYTGFLQQPWYTGRGLFLDPPSVSMQNNAWNISLPKGFQLENLKLENLTFASRDEIFCKGR DKSELATVYSSYISKVLSGFSGSNTIGALIMEPVIQGSGGMHMVDPLFQRVLVNECRSRKVPVIFDEVFTGFWRLGVEFM FLLRLQWS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
SignalP_GRAM_POSITIVE | 1 | 14 | 14 | - | – | |
Gene3D | 26 | 309 | 284 | 6.3E-110 | – | |
PANTHER | 30 | 640 | 611 | 2.0E-151 | – | |
PANTHER | 30 | 640 | 611 | 2.0E-151 | – | |
Hamap | 33 | 285 | 253 | 17.044 | ||
CDD | 34 | 255 | 222 | 2.08448E-45 | – | |
SUPERFAMILY | 35 | 294 | 260 | 7.59E-22 | ||
Pfam | 37 | 120 | 84 | 4.5E-7 | – | |
SUPERFAMILY | 330 | 640 | 311 | 5.56E-31 | ||
Gene3D | 384 | 644 | 261 | 2.6E-101 | ||
Pfam | 397 | 637 | 241 | 9.0E-21 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Magnesium ion binding | Interacting selectively and non-covalently with magnesium (Mg) ions. | ||
Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
Molecular function | Dethiobiotin synthase activity | Catalysis of the reaction: 7,8-diaminononanoate + ATP + CO(2) = ADP + dethiobiotin + 4 H(+) + phosphate. | ||
Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
Molecular function | Transaminase activity | Catalysis of the transfer of an amino group to an acceptor, usually a 2-oxo acid. | ||
Biological process | Biotin biosynthetic process | The chemical reactions and pathways resulting in the formation of biotin, cis-tetrahydro-2-oxothieno(3,4-d)imidazoline-4-valeric acid. | ||
Molecular function | Pyridoxal phosphate binding | Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6. |
Expression pattern of LotjaGi4g1v0298400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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