Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0300200 |
| Transcript ID | LotjaGi4g1v0300200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent zinc metalloprotease FtsH; TAIR: AT5G57480.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q9FKM3|AATPK_ARATH AAA-ATPase At5g57480; TrEMBL-Plants: tr|G7JVH0|G7JVH0_MEDTR p-loop nucleoside triphosphate hydrolase superfamily protein; Found in the gene: LotjaGi4g1v0300200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:67443683..67446387) extracted from Lotus japonicus Gifu genome v1.2.
CCAAGGATCCTCAACTGGGTTTTCTGAAAACAAATCAGAATCCTCGTCAGCAATCTGAAGCAGCAATCTTCAAAAAATTT CCTCATCAGTGTTAAAGTAAAAATGAAAAAAAAAAGAGAATCCTTTGTGAAACCGTGTGGTGTAAACACAATCACTCACT CATGTCCAGCTTCCAACCCAATAAATAGCTCAGGCCCCATCTCTGATATCTTCCCAACCCAAAATTCCAAAACTCTTTTT GTTTTTTTCCACCCCTCTTCTCCCTGCTCTTGTACTTATATCCTCACCACTTGGCCCACTCACTCCCCCTTACATTACAA ATTAAACCACCTTTTTGCCCACCCTTTATTCCCCTCTTCACACACTTTCAAAACCCTCCATCCATCACTCTCTATAAATA CAACCAATCTCACCTTCATTAAATTACAAGTCCTTTCCCATATCACTCCTATCTTCTTAAGCCAATAACATTTTAACTTA CTATTTTATTTCTTTGACACAAACAAACAATGAAGGAGTATTGGACCTCTTTAGCTTCACTTCTAGGTGTGTTTGCTTTC TCCCAAACCCTCTTGCAAGCTCTATTCCCGCCGGAGCTCCGTTTTGCTTCGGCGAAGCTCTTTCACCGGATCTTCCACTG CTTCTCCTCCTACTGCTACTTCGATATCACGGAGATCGACGGCGTCAACACCAACGAGCTCTACAACGCGGTGCAGCTCT ACCTAAGCTCCTCCGTTTCCATCACCGGCAGCCGCCTCAGCCTAACACGCGCCGTCAACTCCAGCGGCTTCACCTTCGGC CTGGCCAACAATGACAGCATCGTCGACACTTTCAACGGCGTCAACGTGCTCTGGGAGCACGTCGTCACCCAGAGGCAAGC TCAGACTTTCTCATGGCGCCCAATGCCCGACGAGAAGCGAGGCTTCACGCTCCGGATCAAGAAACGTGACAAACCCTTCA TCCTGAACTCCTACCTGGACTACATCATGGAGAGAGCCAGTGACATTCGTCGGAAGAATCAGGATCGTCTTCTGTATACA AATTCCAGAGGTGGGTCGTTGGATTCCAGAGGTCACCCTTGGGAATCTGTTCCGTTCAAGCATCCTAGCACGTTTGACAC ATTGGCTATGGATCCTGAGAAGAAGGTGGAGATCATGGAGGATCTTCAGGATTTTGCTAATGGTCAATCGTTTTATCACA AAACTGGTAGAGCTTGGAAGAGGGGTTACCTTCTGTACGGTCCTCCTGGAACTGGAAAATCAAGCATGATTGCAGCTATG GCGAACTACCTTGGTTACGATATCTATGATTTGGAGTTAACAGAGGTGCATAACAACTCTGAACTCAGGAAGCTTCTGAT GAAAACTAGCTCCAAATCGATTATTGTTATCGAGGACATTGATTGTTCTATCAATCTTGCTAACAGGAAGAAGAACAACG GTTCTGCTACTGCGGTTTCTTCCAGAGGCTTCTATGATTCCGGTGCCGGAGAAATGCGAGGTGGCGCGTGCGGTGGTGGT TCTGCGTGCGGGGAAGAGAGTGGGAATTCAATCACGCTTTCCGGGTTGTTGAATTTCACTGATGGGTTGTGGTCATGTTG CGGGAGTGAGAGGATTTTCGTGTTTACAACCAACCACATTGAGAAGCTTGACCCTGCTCTGTTGCGGTGTGGGAGAATGG ACATGCATATTTTCATGAGTTTCTGTTCTTTCCCTGCTTTGAAGATTCTGCTGAAAAACTATCTGGGTTGTGGAGAGGGT GATTTGGATGAAACGATTCTGAAGGAATTGGAGGAGGTTGTTGAAATGGCGAGGATGACTCCAGCTGATATCAGTGAGTG TTTGATCAAGAATAGGAGGAAGAAGGAGAAGGCTGTGAATGAGTTGCTGGAGATATTGAAGATCAGAGCAGAGAGGAATT CAAAAAATGGGGTTCTGAGGGGGAAGATTGGGGAAGGTGGTGAAGAAGTAGAAGAGGAGGAGCAAGAGAAAAGGGCTTTG GATAGTGATAGTCCTCAACAAGAGTCTGAGATTGAAGACAATTGCAAGGAGGAAGAGAAGACCAAGTGATATGATATTGA TACTACACTGTATCATGTTGAAAAAGACTTGTGTTCTCAATTCTCATGATCATGTCATGTTCAACCTCTGTTTCATTTTC CACTGTCACAGTGAGTGAGTTACAGCTGTTACTGAAGAACAGAAATGGTAACATCAAAGGGGAAAAATTGGGGGAGCTCA TTGGATATGACTTGTTGGATAGAAGGGGGAAACAGGGGAAGAAGCTGTAGGCTTCTAATTTAAACATGTCACATACTTGT GTCTTTTTAGTTTTGAATAATGGAGTCTTTTTTATTATTAGATATGTAGGGTAAGTTTAATTGCAACTAGTTTGGTTTTT TCATCATGATCTGCTCATTTTTAGTTTATGATTTGTTCCCTATTGTGCATATTTTTCTCTTCTGGTTAGGCCTTTACACC CTGACATACTTGGTTATCCAGCTGGGATGTTGGTGAACACCTGGGGTGCACATGGCATGGTAACGTTATTAGCTTGATGG GACGTGTAGGAAATATGAGTAATAAGTAGGGTAGCAGTAGCACCATTACCTAACAATATGAATTATTATTCAAACTGAGG TTGAGGGTAATCTATTTTAGAGTTCAAATTAGGGCCATTCTAAATGGAGTTGGAATTGGAGTGCA
CDS sequence (LotjaGi4g1v0300200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGGAGTATTGGACCTCTTTAGCTTCACTTCTAGGTGTGTTTGCTTTCTCCCAAACCCTCTTGCAAGCTCTATTCCC GCCGGAGCTCCGTTTTGCTTCGGCGAAGCTCTTTCACCGGATCTTCCACTGCTTCTCCTCCTACTGCTACTTCGATATCA CGGAGATCGACGGCGTCAACACCAACGAGCTCTACAACGCGGTGCAGCTCTACCTAAGCTCCTCCGTTTCCATCACCGGC AGCCGCCTCAGCCTAACACGCGCCGTCAACTCCAGCGGCTTCACCTTCGGCCTGGCCAACAATGACAGCATCGTCGACAC TTTCAACGGCGTCAACGTGCTCTGGGAGCACGTCGTCACCCAGAGGCAAGCTCAGACTTTCTCATGGCGCCCAATGCCCG ACGAGAAGCGAGGCTTCACGCTCCGGATCAAGAAACGTGACAAACCCTTCATCCTGAACTCCTACCTGGACTACATCATG GAGAGAGCCAGTGACATTCGTCGGAAGAATCAGGATCGTCTTCTGTATACAAATTCCAGAGGTGGGTCGTTGGATTCCAG AGGTCACCCTTGGGAATCTGTTCCGTTCAAGCATCCTAGCACGTTTGACACATTGGCTATGGATCCTGAGAAGAAGGTGG AGATCATGGAGGATCTTCAGGATTTTGCTAATGGTCAATCGTTTTATCACAAAACTGGTAGAGCTTGGAAGAGGGGTTAC CTTCTGTACGGTCCTCCTGGAACTGGAAAATCAAGCATGATTGCAGCTATGGCGAACTACCTTGGTTACGATATCTATGA TTTGGAGTTAACAGAGGTGCATAACAACTCTGAACTCAGGAAGCTTCTGATGAAAACTAGCTCCAAATCGATTATTGTTA TCGAGGACATTGATTGTTCTATCAATCTTGCTAACAGGAAGAAGAACAACGGTTCTGCTACTGCGGTTTCTTCCAGAGGC TTCTATGATTCCGGTGCCGGAGAAATGCGAGGTGGCGCGTGCGGTGGTGGTTCTGCGTGCGGGGAAGAGAGTGGGAATTC AATCACGCTTTCCGGGTTGTTGAATTTCACTGATGGGTTGTGGTCATGTTGCGGGAGTGAGAGGATTTTCGTGTTTACAA CCAACCACATTGAGAAGCTTGACCCTGCTCTGTTGCGGTGTGGGAGAATGGACATGCATATTTTCATGAGTTTCTGTTCT TTCCCTGCTTTGAAGATTCTGCTGAAAAACTATCTGGGTTGTGGAGAGGGTGATTTGGATGAAACGATTCTGAAGGAATT GGAGGAGGTTGTTGAAATGGCGAGGATGACTCCAGCTGATATCAGTGAGTGTTTGATCAAGAATAGGAGGAAGAAGGAGA AGGCTGTGAATGAGTTGCTGGAGATATTGAAGATCAGAGCAGAGAGGAATTCAAAAAATGGGGTTCTGAGGGGGAAGATT GGGGAAGGTGGTGAAGAAGTAGAAGAGGAGGAGCAAGAGAAAAGGGCTTTGGATAGTGATAGTCCTCAACAAGAGTCTGA GATTGAAGACAATTGCAAGGAGGAAGAGAAGACCAAGTGA
Protein sequence (LotjaGi4g1v0300200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKEYWTSLASLLGVFAFSQTLLQALFPPELRFASAKLFHRIFHCFSSYCYFDITEIDGVNTNELYNAVQLYLSSSVSITG SRLSLTRAVNSSGFTFGLANNDSIVDTFNGVNVLWEHVVTQRQAQTFSWRPMPDEKRGFTLRIKKRDKPFILNSYLDYIM ERASDIRRKNQDRLLYTNSRGGSLDSRGHPWESVPFKHPSTFDTLAMDPEKKVEIMEDLQDFANGQSFYHKTGRAWKRGY LLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHNNSELRKLLMKTSSKSIIVIEDIDCSINLANRKKNNGSATAVSSRG FYDSGAGEMRGGACGGGSACGEESGNSITLSGLLNFTDGLWSCCGSERIFVFTTNHIEKLDPALLRCGRMDMHIFMSFCS FPALKILLKNYLGCGEGDLDETILKELEEVVEMARMTPADISECLIKNRRKKEKAVNELLEILKIRAERNSKNGVLRGKI GEGGEEVEEEEQEKRALDSDSPQQESEIEDNCKEEEKTK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 502 | 502 | 2.7E-269 | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| PANTHER | 1 | 502 | 502 | 2.7E-269 | – | |
| Phobius | 1 | 24 | 24 | - | – | |
| TMHMM | 5 | 27 | 23 | - | – | |
| Phobius | 6 | 17 | 12 | - | – | |
| Phobius | 18 | 24 | 7 | - | – | |
| Phobius | 25 | 519 | 495 | - | – | |
| Pfam | 26 | 118 | 93 | 1.4E-22 | ||
| SUPERFAMILY | 146 | 454 | 309 | 5.51E-47 | ||
| Gene3D | 192 | 398 | 207 | 4.7E-42 | – | |
| CDD | 237 | 298 | 62 | 4.28643E-8 | – | |
| Pfam | 241 | 313 | 73 | 1.7E-9 | ||
| MobiDBLite | 475 | 519 | 45 | - | – | |
| MobiDBLite | 494 | 519 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi4g1v0300200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…