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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0301800 |
| Transcript ID | LotjaGi4g1v0301800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Replication protein A subunit; TAIR: AT3G02920.1 Replication protein A, subunit RPA32; Swiss-Prot: sp|Q8LFJ8|RFA2B_ARATH Replication protein A 32 kDa subunit B; TrEMBL-Plants: tr|A0A151SRU2|A0A151SRU2_CAJCA Replication factor A protein 2; Found in the gene: LotjaGi4g1v0301800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:67675579..67679830) extracted from Lotus japonicus Gifu genome v1.2.
TGACATTCCAATGGGTGACCTCACCCTAACTTGTCTATCATTAGAAAATTAATTGAGAAATTAGAAATTTTCTAAGTAGT AAATTTAGATTGAGTATTTATCCAAAAATTAATGATAAACACTGCATAAGAAGGACAAGCGCGATGAGAGGAAAAGAATG GCGGGAAACCAATTATCTTCATCCATTTCCTGCTTAACTTCCATCCACCACACCAAATCGTGAAGTTTCAAATTCCGGAT CCACAGAAGAAGACGAAGAACCACTAAAATGCATGCCAGCCAGTTCGACGGCAATGCAGCCTTCTCCGGCGGCGGATTCA TGCCTTCTCAGGCCACTCAGGGCCATGACCAGCCCTTCTTCCCCTCCAAGGTCTCCCTCTCTCTCTCTCTCTCACTCACT CCACCTATCCTCTCCGCTTATCTCTGTGTTCTCTTCTTCTTCTTCGTAATCGCAACCACAATCACTCACCGGCAACACTA ATTTTCGATTCTAGGGTTTAGGGTTTTGAGTTTTCACTTGTTCGCTCACGATTCCTACTGTTTTTGAGAAATTAAGTGTG ATTAATTCATGATTATACTCTCTATTTGTTTAATTTTTGCAGAATCGTGATGCTCAGTCCTTGCTTCCTCTCACGATCAA GCAGATAAAATACGCTGTTCAATCAAATGATGATAAAACCAATTTGATTATCGACGGTGTCGACGTTAACAATGTGCGCC TCTTCAATCTTAACCTTGTGAATCGCTCATGGATTGTGTGTCTTTCATATATTGTTCTGACTATTGTTGTTTGAGTTCAG GTTACTCTTGTAGGAAGGGTGTGCAACAAAGCTGGAAGGGTTACTGATGTTACTTTTGTACTTGATGATGGTACTGGAAG GATTGATTGTAACAAATGGTGAGTGTTGTGAAATCTTCCTTATCTTGCCAACAATTTTTAGTTTAATTTGATTTTTCTTC TGAGTGAGTTCAAGCTATTGTTTATGTGCAGGCTTCAGGAAGCTGCAGAATCTAATGAAGTGGAGAGTATTATCATGTAT GCTAGTAGCATTGCATTTCTTGCTCTTATTGTTTTCCATTTAATACTATGTTAGTTGATTTCCAATGGGGTTTTGAGCTT TTACCGGTATGTAAAGAGAAGAATGGCATGATATGTTACTCATTTTAGTCATGTTTTAACCTTATTTTATCTGCTTCTGA ATCTTAACAATGTTTTTAATGGGTTAATTGAGTGAGGAAATGGCATCTTTCAAGTTGCTTGTTACTGCTTAAACAGACAA TTCTTAATAGTAAAAGCATACCAGAATGATATGGTTGGCTTTCTTTCTTGGGTCCAACACTCCCTTTAGAGGGTAAAGTA AGTCATCACAACCATTGATTGGATTGTTTTATTGACTTTTCTAAGTAGTTAATCAATAATAACGGTTGTGATGACTTACT TTACCCTATAAAGTGACTCTCTCAATTTAGAGGAGCCAAATCCGTTTTGCAATGAGGTGCTTTGAAATATTGTTGTTGCC ACTTCTGTAGTTTCTTCTTTTCTCAGTCAATTTATTTCATATAGAATGAACTAAAATTATTGTTTCAAAATTAGGGATGG GGTGTATCTGCGGCTACATGGACAGTTGAAGGGTTTTCAGGGTAAAAGGACTTTAAATGTTTTCTCTTTCAGGTAGGATA TGAAGTTTACCTTTCAGTTTTTATTTTAACAGTTAAATATTTTAGATTATCATGGGTATCTTTTGTTACCATAGCTATTA CCAAAGGATAGTTATTCTGCTGTCTAAGTGAATGTGAAGGAAGACATATTATTTTGCTAACAATTCAATATTTTACTTCC TTTATTTGTTCAGGCCTGTGACTGACTTCAACGAGATTGCCAGCCATTTCATTGATTGCATATATGTTCATCTCTATAAT TCCAGATTACGGGTATTAGTTTTAAAATTGCAAGTTTTATGTTGGAGTTTGACATGATATCGTGTGTATATATGATTATG AATTTTGACAAGTTTGTACCATATGAGTCTGTGCTTTCTAATGTTTTATGTGGTAAAACATCTTCAGGCTAGTGTCCCTG TTCAGCAACATGTTTCTAATTCCACACAAATTACTCCCACAAAAGGTTATCAAGCTCAAGCTGTCCCACCAAATCAAGTA AGTGCACGATGTTTTTAGCTTTTGCTTCATTTTTATCCAGACTTCTCACTGGTTTGCTGCTTTTTTGTTGTAGTTCTCTG GTCAACAAAACAATGGTCAGAATAGGAATAGCCTTGAAAATATGGTTTTAGACGTTTTACTTCTTCCCACAAGCAGGTGC TTTTTTTAATTTCTTTTGTTTGTGTTATTTGGTTGGCCCTTATTGAACACTTGGTGCCTGTGTTTTCCCTGAACGTTGGA TTATCTATCCTTGTGGGATTATACTTCACACACGCACACATCCATGCATGCCTCTCCATACATACCTTTCTTAGATATTG CCAGAGCTAAGCATCATCTACAGTAAAAGTGGAATAAGGATTATTCTAGTTGTTTGATTTGGTGTAGGTTGTAAACGGAT ATTTTTTATTGTTCTGCAGAGTTAAGAGTATGAATTCTAGGGGTTTATTGGACATATATGAGAAGTGTCTCATGTTAACA AATGATCCAGCTGATCATCAATAATGTGATTATGCAAGCCGTAACTATAATCTTGGGTAAAGTGCATGAGCAAAGAGTTA GTGAGTGACGTGATTTATCTTGGCATCCATAATTTCCAATGGGGATTGGAGATATGTAATCTCATATCGTTATCAATAGC GCCGTCTCGTAGCATAGCAGACCCCTTCCGTGACGGGATTGCGGCTGTAAAATCCCGCTATTCGCGGCCAATAGCTGCCT TTCCTTGTATGGGATTTCATTTTTGGGGGTCATCCGCGATCCGCGATTGACTAGTTCATATGCTTTTCTTGTTTTGACAA AATCCTGAGAATGTGAGATCTTTAATTTTTAAGCTGTACAGAATCTTGCACAAGTCAAACTAGTAGAATTAAACAGTAAA ACAACTAATACCTGTAGAACATTATTACTTGTTGCAACGTTAAAACAATCATCCGAACCCATCACAGAAGCACACAAACT TGCTTACAATAGAGTTTTTTACTTATTTACTTTTTAGATGCATCTGTTTACTTGCAAGATTTTGTCTGGTATTCACGGCT TAAGCTGTATGTTATTGACTTTTCAGGGCAAAGGAGGAGGGAGTCTCTCAAGATCTTATTGCACAGCATCTTGGAATTCC ATTGGATAAGCTCATGTCTCTTCTCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATATATATATATAT CTTTTTATCTAGTTTTTGTTGACTCTGATTTTGGTTTGCAGGCCGGCTATTAAGAGTCTTGGTGATGACGGTGCCATTTA TGAAACTATAGCTGAGCACTACAAGTCAATCGTCGATTGTTGAGATCATATGGTGGACAGACAGAGACATCAATCTTGCC AGAGTAAGCTCAACTCTGCGCAACCTTGTACTTGTGAGTATGAACTGGTGACATATTAAGGCTTGATCAACTTGTCTCTC TTTTCCCTACTACTAATGAGTATGAACTGGTGACTACTATATCATGACATGAAATGTATCGCTACTGGTGTCAGCTGAGG CACGCAGTTTTTTTTTTTTTGGTCAATCGCACGCAGTTATCTTGTTAAGGACTAAGAATCCTAGACATCGAGGAGCCCAT GGGCTTCATTGCAGTTTCGTTTAGATCCTTTCGGACCAAGTATTGGGCCCTATTAAATACTGCTACTCGTTGCATAATTG TTTTTTTATTTTCCAAAAATATATTTAGTCCTTGACTATATGTTTCAATACAGGATCCACAGCATATGTTGTGACCACGC GATATCTTAAATCGAAGTAGTTTCGACACAAAGAAAATCTAAGAAGCGAAGTGCAATACTAGAAAATATGATAAGTATTT CGCTGAGAATCCATAAAAAGGTAACAAAGGGCTAGTTTAATCTACAAATAGCATGATAGGATTATATGTTATGCTTTTAT CAGTTGTTTCGTATGACCTTTTTACTTGTACATGCTTATTCACCAAATCATTCTTATATATTAGATGATTGATAATTAAG TTTAACAAATGGGGTTATGCTTGGTTAAATTTTGATGTCTAAATTCATGTATTTTTTTATTGCATCTTAATTTGAGATAT GTAATTTTGTTG
CDS sequence (LotjaGi4g1v0301800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCATGCCAGCCAGTTCGACGGCAATGCAGCCTTCTCCGGCGGCGGATTCATGCCTTCTCAGGCCACTCAGGGCCATGA CCAGCCCTTCTTCCCCTCCAAGAATCGTGATGCTCAGTCCTTGCTTCCTCTCACGATCAAGCAGATAAAATACGCTGTTC AATCAAATGATGATAAAACCAATTTGATTATCGACGGTGTCGACGTTAACAATGTTACTCTTGTAGGAAGGGTGTGCAAC AAAGCTGGAAGGGTTACTGATGTTACTTTTGTACTTGATGATGGTACTGGAAGGATTGATTGTAACAAATGGCTTCAGGA AGCTGCAGAATCTAATGAAGTGGAGAGTATTATCATGGATGGGGTGTATCTGCGGCTACATGGACAGTTGAAGGGTTTTC AGGGTAAAAGGACTTTAAATGTTTTCTCTTTCAGGCCTGTGACTGACTTCAACGAGATTGCCAGCCATTTCATTGATTGC ATATATGTTCATCTCTATAATTCCAGATTACGGGCTAGTGTCCCTGTTCAGCAACATGTTTCTAATTCCACACAAATTAC TCCCACAAAAGGTTATCAAGCTCAAGCTGTCCCACCAAATCAATTCTCTGGTCAACAAAACAATGGTCAGAATAGGAATA GCCTTGAAAATATGGTTTTAGACGTTTTACTTCTTCCCACAAGCAGGGCAAAGGAGGAGGGAGTCTCTCAAGATCTTATT GCACAGCATCTTGGAATTCCATTGGATAAGCTCATGCCGGCTATTAAGAGTCTTGGTGATGACGGTGCCATTTATGAAAC TATAGCTGAGCACTACAAGTCAATCGTCGATTGTTGA
Protein sequence (LotjaGi4g1v0301800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MHASQFDGNAAFSGGGFMPSQATQGHDQPFFPSKNRDAQSLLPLTIKQIKYAVQSNDDKTNLIIDGVDVNNVTLVGRVCN KAGRVTDVTFVLDDGTGRIDCNKWLQEAAESNEVESIIMDGVYLRLHGQLKGFQGKRTLNVFSFRPVTDFNEIASHFIDC IYVHLYNSRLRASVPVQQHVSNSTQITPTKGYQAQAVPPNQFSGQQNNGQNRNSLENMVLDVLLLPTSRAKEEGVSQDLI AQHLGIPLDKLMPAIKSLGDDGAIYETIAEHYKSIVDC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 276 | 276 | 3.8E-66 | ||
| PANTHER | 3 | 277 | 275 | 5.6E-91 | – | |
| PANTHER | 3 | 277 | 275 | 5.6E-91 | ||
| Gene3D | 33 | 169 | 137 | 3.0E-43 | – | |
| SUPERFAMILY | 41 | 168 | 128 | 4.28E-29 | ||
| CDD | 71 | 165 | 95 | 1.15564E-38 | – | |
| Pfam | 164 | 270 | 107 | 2.3E-11 | ||
| Gene3D | 207 | 276 | 70 | 3.0E-5 | ||
| SUPERFAMILY | 213 | 274 | 62 | 9.07E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | DNA replication | The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA. | ||
| Biological process | DNA repair | The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. | ||
| Biological process | DNA recombination | Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Interchromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction. |
Expression pattern of LotjaGi4g1v0301800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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