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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0302800 |
| Transcript ID | LotjaGi4g1v0302800.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Lysine--tRNA ligase; TAIR: AT3G11710.1 lysyl-tRNA synthetase 1; Swiss-Prot: sp|Q9ZPI1|SYKC_ARATH Lysine--tRNA ligase, cytoplasmic; TrEMBL-Plants: tr|I1LZI3|I1LZI3_SOYBN Lysine--tRNA ligase; Found in the gene: LotjaGi4g1v0302800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:67771733..67776268) extracted from Lotus japonicus Gifu genome v1.2.
CTGTTTTGTCTCATTTCATCTGCGTTGCCGTTCACTGTTCTGACGATGGAACCTCCCTCATCGGAGCCTGCAGCTTCCGG CGCCGGCGAAAACCTCAGCAAAAAGTGAGTGTTCTTCATCAATGCTTCCGCTTTCGCATTGGCTCAATCTGAATTCACAT TTCATTCATTCATTGCTTCATTTCCTTTTGCGTGCAGTGCATTGAAGCGGGAACTCAAGAACAAGCAGAGAGAAGAGGAG AGAAAGCGCAAGGAGGAAGAAAAGGCCAAAAAGGTAATTAATTCTACTTTCTTCCCTCCATTTTCTTCTCTTGGTCTTAA ATCCTAATGGTGTGCAATTTAAATGTCAATGCAATTCTTTTGCTTTTTTAGGCTGCTGAACTGCAACGTGCTCAATCTAA CAAACCTGCTTCTGCCGATGACGATGATATGGACCCAACGGTTAGTTCCTCTGCTGTCATTGTAATGATTTTCAGTTGTG ATTTCACTCTATGCAGTAACTGATAATTTGGTTTAACTTACTGCAGCAATACCATGAGAACAGGCTTAAGTATCTTGCTG CCCACAAGGCGGAAGGGAATAACCCGTACCCGCACAAATTCGCGGTCTCTATGTCCATTGAGCAATACATCAGCAAATAT GGAGGGTTGAGCGATGGGGAGCACGTTGAAGATGTCTCTGTGTCTTTGGCTGGTACTCAACGATTTCTGTTTTGACTTTT GACCTTTTTTGGGGGCAGGGGTGAATTTCGTTATGTTGCTGTTTTATATGTTGATTGTAGTTTTCTTTCTCTGCTGCAGG CCGAATTATGCACAAACGTACTTCGGGTGCAAAGCTTGTCTTTTATGATCTTCATGGTGGTGGCCTCAAGGTTCAGGTTA TGGCTGATGCAAGGTACCCAAAAGTTGCTACTTTTATCTTTACTGCCAATATAGGAGAATCATAACAAAAGATATAACAT TGTACTGTCGTGTTCTGTGGTATCCTATTCCCTTCTTACATTGGTGGTCTAACTAAGTTAAGGGTAGCTGTGTGGTTTTC CAGCAAATATAGATCCTATATATGTTTTTCCTTTATATTTTTCTTTCATAGGACTAAAGCAAGTTATATCTCTCGGGTGC AGTAAATCTGATTTGGGTGAGGTTGAGTTTTCCAAATTCCATTCTAATGTGAAGCGTGGGGATATTGTTGGTATCACTGG ATTTCCAGGTTTGAGATGTTACTCACTTTTTAGTTTGTTCTAATATTCATTTTCTTGACTTTATTTCCTTATAGGGCGGT CTTTCTTTCACTTAAAATCCAATCTCCCTTGTTCTTCTATCCGATCATTTAGACTATAAGTGCTTGTAATGAGGTGAATA ACAGTTGCTGTACATATGTTAACCCTTTTTTTCCCCTGTTCAATTGTTTAGGGAAAAGTAAGAAAGGGGAGCTTAGTATT TTCCCCAAGACTTTTGTAGTGCTGTCTCATTGTTTACATATGATGCCAAGGGCAAAGTCTGCTGCTGCTGCTGCTGATAA TGCAAATTTGAAGGTGAAATTTATTTCTGTTGGTGATTGATTGATGCTGTTTAAACTTCATGCATAATGGCATTGTTATT TCATTTATTATCTGTAGAAAAGCGCATGGATCCCAGGAAGTACCAGGAATCCTGAAACATACATTTTGAAGGATCAGGTA TTATTGGCATGAAATCTACTTTGATAAAATTTTTCATTTTTCTTGATTATTTTTGCAAAATCTTTTGTGCAATATACTAT CTTATGTTTTAGGAACTATTTTTTAGCAGATAGTAATTAGGTGGAAATACTGGTGTTACTAAGAGAAAGTGTTAGTGTGC ATGCAGTATACCTTCATCCTTTTGTGTCCGGGGATAGGGATAAGGAACGAGTTGAGTTAGATGATATTGGCCACTATCTC TCACTATTCTCTTGTGTGATTGGCTTTCATTTTCCTATTTGCCTTGCAAAAAAGAAGTTTTTGTTATTCATGAGAGCATG GATGTTTTCATGTCAAGTTTAATAATTGAGCTTAAAGTCTTGAACTAAGACAGACAGCTCTAACTTTTTCTCAATATTAT ACTAGGATCTTCCCAAGTTTACACATTGCTTTCTATTAAAAATCTAACAGAAAACTCCTATTTTTACTCCTAAATGAGTA TTCTCAATCATATTCTTCAACGAACCATTCATCAATAGCAGGAACATTTCCCCTCCCCTGCCATTTTGGCTTTTGATGGG AAAACACCTCTCTAATTAAGAATGGTGGGTTTTGATGTGAGGTGGGAGAGAGGGATTTCATATCTTCTGTGTTCTTTCAG TTAAGTATATCACTCATCTACTAACAGTGGTACTTTTATCTTCCGGTCTAATTTTCTTTCTTAGGAAACAAGGTATCGTT TACGCCATTTGGATTTGATGTTGAATCCAGAGGTTCGAGAGATATTTAAGACCAGATGTAAAATCATCTCTTACATCAGG AGGTTCCTTGATGACCTTGATTTTTTGGAGGTTTGTACCAATGTTGAAGTATGATGATGCCAGCTGCCTTAAGTTTCTTT CCTTCCGTTCACATACTGTTTTCCCTGCTTTCAGGTTGAAACACCTATGATGAACATGATTGCTGGTGGAGCAGCAGCCC GTCCATTCGTTACTCATCACAATGATCTTAACATGAGGTTGTACATGAGAATTGCTCCAGAACTTTATCTTAAGGAGCTT GTTGTTGGTGGGCTGGATCGTGTATATGAAATTGGTAAACAGTTTAGAAATGAGGGTATAGATTTGACACATAATCCTGA GTTCACTACCTGCGAGTTTTATATGGCTTATATGGACTACAACGACTTAATGGAGATAACAGAACAAATGTTGAGTGGTA GGAAGTTTTAAGGTCTTTTGATTGCTATCTTATTTTTCTTATTTTATCTTCATGTTTTTATCCTCTTCGGAGTCATCTAG TTAATCTCTTGATGGGAAAAATTTAAATAGGCATGGTTAAGGAACTCACAAAAGGAAGCTACAAAATCAAGTATCATGCA GAGGGGATTGATAAGGATCCTATTGAAATAGACTTCACTCCACCCTTCAGGTGTGGTTTAAATTTGCTCATCAACGGTGG TGGTTCTAAACTCTATTATATTTGAAATGATTCATTTTGGGTTTTTGATTGTTACAGAAGGATTGATATGATTGAGGAAC TAGAGAAAATGGCAGGCCTCAGTATTCCCAAGGACTTGTCTAGTGAGGAAACTAATCAATATCTGAAGAATGCTTGCTTG AAGTATGACATCAAATGCCCTCCCCCTGAAACAACCACTCGCTTGCTGGATAAAGTAATCTACTTTCTTTTTTGGCTTAT AATATTCTTTATTTTCAATTTTTCCTGCTTTGCTATAGCAGATTGTAGCTTCTTTTTCCTTGTTGAAATGTTGCAAAAGT TTTAATTGATTCATAGGGTGATTAACTAATATGAACATAAAGAGTTCAAAAATTGGATAAAATTTGGTATGATCTGCTGT ACTTCATATAGAAATGGAAATCTGGTTCTAGTTGGCAAAGAGGGCAGAGACTATTTTTTCTGTCAGGAGGGGGGAGGGGA GGAGTTAAGATAATCGATTTTCTAGTCTTGATGATAAACAAATAACCACTCCACTAATATAGCTCAAATATCCAGTTATG AGCTCATTCTGTTAAAATGAGTTGGAATTATTCCTATGGGAAAGGTGGCTGCAAATTGAGTGATGACTGGATGCAGCTCT CACACTTTTTTGCAGTTGTATATTTGGATAGCACTTAGAACTTAATTATGATCATCTGCTTGAAATGCTTTAAATTCGAG TTCATCTGGATCTTCATTTTTCTTGTATATTGCAGCTTGTAGGGCACTTTTTGGAAGAAACGTGTGTGAATCCTACATTC ATCATAAACCATCCTGAGATAATGAGTCCTTTGGCGAAGTGGCACAGATCAAAACCAGGCTTGACAGAACGCTTTGAATT GTTTGTTAATAAGCATGAAGTAAGTTCATGAAACTTAGTTGATTAATATTAAAACCCAAAAAAAAAAACTTCCTTATTCT TATCACTGTTTTTGATACTTTTCAGCTTTGCAATGCATACACTGAATTGAATGACCCTGTAGTACAACGTCAGAGATTTG CTGAACAACTCAAGGTAAAGAGATATGATTTAACTATTAACTTACTCAATTGATTCCCTGCTCAAATTATTTTTAATGCA TGACGAGTAAGTGGTGTGTGCTCCTTCATGACAGGATCGGCAATCAGGCGATGATGAAGCAATGGCCTTAGACGAAACAT TTTGTACAGCTCTAGAGTATGGTCTGCCACCAACTGGGGGTTGGGGTTTGGGTATTGATCGGCTGACGATGATACTGACT GATTCTCAGAATATTAAGGTTCTTCGCTTCTCTGTTACTCTTCATGCTCACTTTGTTTTTGCAACTTCTAACAATTTTCG TTCCTTTTGGGTGACAGGAAGTACTTCTCTTCCCTGCCATGAAACCTCAAGATTGA
CDS sequence (LotjaGi4g1v0302800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAACCTCCCTCATCGGAGCCTGCAGCTTCCGGCGCCGGCGAAAACCTCAGCAAAAATGCATTGAAGCGGGAACTCAA GAACAAGCAGAGAGAAGAGGAGAGAAAGCGCAAGGAGGAAGAAAAGGCCAAAAAGGCTGCTGAACTGCAACGTGCTCAAT CTAACAAACCTGCTTCTGCCGATGACGATGATATGGACCCAACGCAATACCATGAGAACAGGCTTAAGTATCTTGCTGCC CACAAGGCGGAAGGGAATAACCCGTACCCGCACAAATTCGCGGTCTCTATGTCCATTGAGCAATACATCAGCAAATATGG AGGGTTGAGCGATGGGGAGCACGTTGAAGATGTCTCTGTGTCTTTGGCTGGCCGAATTATGCACAAACGTACTTCGGGTG CAAAGCTTGTCTTTTATGATCTTCATGGTGGTGGACTAAAGCAAGTTATATCTCTCGGGTGCAGTAAATCTGATTTGGGT GAGGTTGAGTTTTCCAAATTCCATTCTAATGTGAAGCGTGGGGATATTGTTGGTATCACTGGATTTCCAGGGAAAAGTAA GAAAGGGGAGCTTAGTATTTTCCCCAAGACTTTTGTAGTGCTGTCTCATTGTTTACATATGATGCCAAGGGCAAAGTCTG CTGCTGCTGCTGCTGATAATGCAAATTTGAAGAAAAGCGCATGGATCCCAGGAAGTACCAGGAATCCTGAAACATACATT TTGAAGGATCAGGAAACAAGGTATCGTTTACGCCATTTGGATTTGATGTTGAATCCAGAGGTTCGAGAGATATTTAAGAC CAGATGTAAAATCATCTCTTACATCAGGAGGTTCCTTGATGACCTTGATTTTTTGGAGGTTGAAACACCTATGATGAACA TGATTGCTGGTGGAGCAGCAGCCCGTCCATTCGTTACTCATCACAATGATCTTAACATGAGGTTGTACATGAGAATTGCT CCAGAACTTTATCTTAAGGAGCTTGTTGTTGGTGGGCTGGATCGTGTATATGAAATTGGTAAACAGTTTAGAAATGAGGG TATAGATTTGACACATAATCCTGAGTTCACTACCTGCGAGTTTTATATGGCTTATATGGACTACAACGACTTAATGGAGA TAACAGAACAAATGTTGAGTGGCATGGTTAAGGAACTCACAAAAGGAAGCTACAAAATCAAGTATCATGCAGAGGGGATT GATAAGGATCCTATTGAAATAGACTTCACTCCACCCTTCAGAAGGATTGATATGATTGAGGAACTAGAGAAAATGGCAGG CCTCAGTATTCCCAAGGACTTGTCTAGTGAGGAAACTAATCAATATCTGAAGAATGCTTGCTTGAAGTATGACATCAAAT GCCCTCCCCCTGAAACAACCACTCGCTTGCTGGATAAACTTGTAGGGCACTTTTTGGAAGAAACGTGTGTGAATCCTACA TTCATCATAAACCATCCTGAGATAATGAGTCCTTTGGCGAAGTGGCACAGATCAAAACCAGGCTTGACAGAACGCTTTGA ATTGTTTGTTAATAAGCATGAACTTTGCAATGCATACACTGAATTGAATGACCCTGTAGTACAACGTCAGAGATTTGCTG AACAACTCAAGGATCGGCAATCAGGCGATGATGAAGCAATGGCCTTAGACGAAACATTTTGTACAGCTCTAGAGTATGGT CTGCCACCAACTGGGGGTTGGGGTTTGGGTATTGATCGGCTGACGATGATACTGACTGATTCTCAGAATATTAAGGAAGT ACTTCTCTTCCCTGCCATGAAACCTCAAGATTGA
Protein sequence (LotjaGi4g1v0302800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEPPSSEPAASGAGENLSKNALKRELKNKQREEERKRKEEEKAKKAAELQRAQSNKPASADDDDMDPTQYHENRLKYLAA HKAEGNNPYPHKFAVSMSIEQYISKYGGLSDGEHVEDVSVSLAGRIMHKRTSGAKLVFYDLHGGGLKQVISLGCSKSDLG EVEFSKFHSNVKRGDIVGITGFPGKSKKGELSIFPKTFVVLSHCLHMMPRAKSAAAAADNANLKKSAWIPGSTRNPETYI LKDQETRYRLRHLDLMLNPEVREIFKTRCKIISYIRRFLDDLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMRLYMRIA PELYLKELVVGGLDRVYEIGKQFRNEGIDLTHNPEFTTCEFYMAYMDYNDLMEITEQMLSGMVKELTKGSYKIKYHAEGI DKDPIEIDFTPPFRRIDMIEELEKMAGLSIPKDLSSEETNQYLKNACLKYDIKCPPPETTTRLLDKLVGHFLEETCVNPT FIINHPEIMSPLAKWHRSKPGLTERFELFVNKHELCNAYTELNDPVVQRQRFAEQLKDRQSGDDEAMALDETFCTALEYG LPPTGGWGLGIDRLTMILTDSQNIKEVLLFPAMKPQD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 68 | 68 | - | – | |
| PIRSF | 6 | 597 | 592 | 2.8E-264 | ||
| PANTHER | 13 | 597 | 585 | 0.0 | – | |
| PANTHER | 13 | 597 | 585 | 0.0 | – | |
| Coils | 19 | 55 | 37 | - | – | |
| MobiDBLite | 20 | 49 | 30 | - | – | |
| Gene3D | 61 | 209 | 149 | 4.7E-43 | – | |
| SUPERFAMILY | 65 | 209 | 145 | 9.06E-32 | ||
| Hamap | 73 | 596 | 524 | 37.295 | ||
| CDD | 119 | 255 | 137 | 5.05655E-42 | – | |
| Pfam | 120 | 197 | 78 | 2.0E-9 | ||
| TIGRFAM | 235 | 596 | 362 | 1.4E-154 | ||
| Gene3D | 239 | 597 | 359 | 2.5E-143 | – | |
| Pfam | 243 | 593 | 351 | 6.7E-84 | ||
| SUPERFAMILY | 243 | 594 | 352 | 4.59E-119 | – | |
| CDD | 258 | 595 | 338 | 0.0 | ||
| ProSiteProfiles | 270 | 595 | 326 | 25.884 | ||
| PRINTS | 280 | 290 | 11 | 2.6E-37 | ||
| PRINTS | 296 | 312 | 17 | 2.6E-37 | ||
| PRINTS | 325 | 338 | 14 | 2.6E-37 | ||
| PRINTS | 343 | 360 | 18 | 2.6E-37 | ||
| PRINTS | 478 | 494 | 17 | 2.6E-37 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Aminoacyl-tRNA ligase activity | Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP. | ||
| Molecular function | Lysine-tRNA ligase activity | Catalysis of the reaction: ATP + L-lysine + tRNA(Lys) = AMP + diphosphate + L-lysyl-tRNA(Lys). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Biological process | TRNA aminoacylation for protein translation | The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, to be used in ribosome-mediated polypeptide synthesis. | ||
| Biological process | Lysyl-tRNA aminoacylation | The process of coupling lysine to lysyl-tRNA, catalyzed by lysyl-tRNA synthetase. The lysyl-tRNA synthetase is a class-II synthetase. The activated amino acid is transferred to the 3'-OH group of a lysine-accetping tRNA. |
Expression pattern of LotjaGi4g1v0302800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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