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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0302800 |
| Transcript ID | LotjaGi4g1v0302800.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Lysine--tRNA ligase; TAIR: AT3G11710.1 lysyl-tRNA synthetase 1; Swiss-Prot: sp|Q6F2U9|SYK_ORYSJ Lysine--tRNA ligase; TrEMBL-Plants: tr|A0A1J7IH24|A0A1J7IH24_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0302800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:67773817..67776287) extracted from Lotus japonicus Gifu genome v1.2.
GGATCTTCCCAAGTTTACACATTGCTTTCTATTAAAAATCTAACAGAAAACTCCTATTTTTACTCCTAAATGAGTATTCT CAATCATATTCTTCAACGAACCATTCATCAATAGCAGGAACATTTCCCCTCCCCTGCCATTTTGGCTTTTGATGGGAAAA CACCTCTCTAATTAAGAATGGTGGGTTTTGATGTGAGGTGGGAGAGAGGGATTTCATATCTTCTGTGTTCTTTCAGTTAA GTATATCACTCATCTACTAACAGTGGTACTTTTATCTTCCGGTCTAATTTTCTTTCTTAGGAAACAAGGTATCGTTTACG CCATTTGGATTTGATGTTGAATCCAGAGGTTCGAGAGATATTTAAGACCAGATGTAAAATCATCTCTTACATCAGGAGGT TCCTTGATGACCTTGATTTTTTGGAGGTTTGTACCAATGTTGAAGTATGATGATGCCAGCTGCCTTAAGTTTCTTTCCTT CCGTTCACATACTGTTTTCCCTGCTTTCAGGTTGAAACACCTATGATGAACATGATTGCTGGTGGAGCAGCAGCCCGTCC ATTCGTTACTCATCACAATGATCTTAACATGAGGTTGTACATGAGAATTGCTCCAGAACTTTATCTTAAGGAGCTTGTTG TTGGTGGGCTGGATCGTGTATATGAAATTGGTAAACAGTTTAGAAATGAGGGTATAGATTTGACACATAATCCTGAGTTC ACTACCTGCGAGTTTTATATGGCTTATATGGACTACAACGACTTAATGGAGATAACAGAACAAATGTTGAGTGGTAGGAA GTTTTAAGGTCTTTTGATTGCTATCTTATTTTTCTTATTTTATCTTCATGTTTTTATCCTCTTCGGAGTCATCTAGTTAA TCTCTTGATGGGAAAAATTTAAATAGGCATGGTTAAGGAACTCACAAAAGGAAGCTACAAAATCAAGTATCATGCAGAGG GGATTGATAAGGATCCTATTGAAATAGACTTCACTCCACCCTTCAGGTGTGGTTTAAATTTGCTCATCAACGGTGGTGGT TCTAAACTCTATTATATTTGAAATGATTCATTTTGGGTTTTTGATTGTTACAGAAGGATTGATATGATTGAGGAACTAGA GAAAATGGCAGGCCTCAGTATTCCCAAGGACTTGTCTAGTGAGGAAACTAATCAATATCTGAAGAATGCTTGCTTGAAGT ATGACATCAAATGCCCTCCCCCTGAAACAACCACTCGCTTGCTGGATAAAGTAATCTACTTTCTTTTTTGGCTTATAATA TTCTTTATTTTCAATTTTTCCTGCTTTGCTATAGCAGATTGTAGCTTCTTTTTCCTTGTTGAAATGTTGCAAAAGTTTTA ATTGATTCATAGGGTGATTAACTAATATGAACATAAAGAGTTCAAAAATTGGATAAAATTTGGTATGATCTGCTGTACTT CATATAGAAATGGAAATCTGGTTCTAGTTGGCAAAGAGGGCAGAGACTATTTTTTCTGTCAGGAGGGGGGAGGGGAGGAG TTAAGATAATCGATTTTCTAGTCTTGATGATAAACAAATAACCACTCCACTAATATAGCTCAAATATCCAGTTATGAGCT CATTCTGTTAAAATGAGTTGGAATTATTCCTATGGGAAAGGTGGCTGCAAATTGAGTGATGACTGGATGCAGCTCTCACA CTTTTTTGCAGTTGTATATTTGGATAGCACTTAGAACTTAATTATGATCATCTGCTTGAAATGCTTTAAATTCGAGTTCA TCTGGATCTTCATTTTTCTTGTATATTGCAGCTTGTAGGGCACTTTTTGGAAGAAACGTGTGTGAATCCTACATTCATCA TAAACCATCCTGAGATAATGAGTCCTTTGGCGAAGTGGCACAGATCAAAACCAGGCTTGACAGAACGCTTTGAATTGTTT GTTAATAAGCATGAAGTAAGTTCATGAAACTTAGTTGATTAATATTAAAACCCAAAAAAAAAAACTTCCTTATTCTTATC ACTGTTTTTGATACTTTTCAGCTTTGCAATGCATACACTGAATTGAATGACCCTGTAGTACAACGTCAGAGATTTGCTGA ACAACTCAAGGTAAAGAGATATGATTTAACTATTAACTTACTCAATTGATTCCCTGCTCAAATTATTTTTAATGCATGAC GAGTAAGTGGTGTGTGCTCCTTCATGACAGGATCGGCAATCAGGCGATGATGAAGCAATGGCCTTAGACGAAACATTTTG TACAGCTCTAGAGTATGGTCTGCCACCAACTGGGGGTTGGGGTTTGGGTATTGATCGGCTGACGATGATACTGACTGATT CTCAGAATATTAAGGTTCTTCGCTTCTCTGTTACTCTTCATGCTCACTTTGTTTTTGCAACTTCTAACAATTTTCGTTCC TTTTGGGTGACAGGAAGTACTTCTCTTCCCTGCCATGAAACCTCAAGATTGATCCTTCAACTAAACGCAGG
CDS sequence (LotjaGi4g1v0302800.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGAATCCAGAGGTTCGAGAGATATTTAAGACCAGATGTAAAATCATCTCTTACATCAGGAGGTTCCTTGATGACCT TGATTTTTTGGAGGTTGAAACACCTATGATGAACATGATTGCTGGTGGAGCAGCAGCCCGTCCATTCGTTACTCATCACA ATGATCTTAACATGAGGTTGTACATGAGAATTGCTCCAGAACTTTATCTTAAGGAGCTTGTTGTTGGTGGGCTGGATCGT GTATATGAAATTGGTAAACAGTTTAGAAATGAGGGTATAGATTTGACACATAATCCTGAGTTCACTACCTGCGAGTTTTA TATGGCTTATATGGACTACAACGACTTAATGGAGATAACAGAACAAATGTTGAGTGGCATGGTTAAGGAACTCACAAAAG GAAGCTACAAAATCAAGTATCATGCAGAGGGGATTGATAAGGATCCTATTGAAATAGACTTCACTCCACCCTTCAGAAGG ATTGATATGATTGAGGAACTAGAGAAAATGGCAGGCCTCAGTATTCCCAAGGACTTGTCTAGTGAGGAAACTAATCAATA TCTGAAGAATGCTTGCTTGAAGTATGACATCAAATGCCCTCCCCCTGAAACAACCACTCGCTTGCTGGATAAACTTGTAG GGCACTTTTTGGAAGAAACGTGTGTGAATCCTACATTCATCATAAACCATCCTGAGATAATGAGTCCTTTGGCGAAGTGG CACAGATCAAAACCAGGCTTGACAGAACGCTTTGAATTGTTTGTTAATAAGCATGAACTTTGCAATGCATACACTGAATT GAATGACCCTGTAGTACAACGTCAGAGATTTGCTGAACAACTCAAGGATCGGCAATCAGGCGATGATGAAGCAATGGCCT TAGACGAAACATTTTGTACAGCTCTAGAGTATGGTCTGCCACCAACTGGGGGTTGGGGTTTGGGTATTGATCGGCTGACG ATGATACTGACTGATTCTCAGAATATTAAGGAAGTACTTCTCTTCCCTGCCATGAAACCTCAAGATTGA
Protein sequence (LotjaGi4g1v0302800.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLNPEVREIFKTRCKIISYIRRFLDDLDFLEVETPMMNMIAGGAAARPFVTHHNDLNMRLYMRIAPELYLKELVVGGLDR VYEIGKQFRNEGIDLTHNPEFTTCEFYMAYMDYNDLMEITEQMLSGMVKELTKGSYKIKYHAEGIDKDPIEIDFTPPFRR IDMIEELEKMAGLSIPKDLSSEETNQYLKNACLKYDIKCPPPETTTRLLDKLVGHFLEETCVNPTFIINHPEIMSPLAKW HRSKPGLTERFELFVNKHELCNAYTELNDPVVQRQRFAEQLKDRQSGDDEAMALDETFCTALEYGLPPTGGWGLGIDRLT MILTDSQNIKEVLLFPAMKPQD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 342 | 342 | 5.2E-227 | – | |
| Gene3D | 1 | 342 | 342 | 4.9E-136 | – | |
| PANTHER | 1 | 342 | 342 | 5.2E-227 | – | |
| TIGRFAM | 2 | 341 | 340 | 4.8E-146 | ||
| CDD | 3 | 340 | 338 | 0.0 | ||
| Pfam | 3 | 338 | 336 | 5.4E-81 | ||
| SUPERFAMILY | 3 | 339 | 337 | 1.32E-113 | – | |
| ProSiteProfiles | 15 | 340 | 326 | 25.884 | ||
| PRINTS | 25 | 35 | 11 | 2.3E-38 | ||
| PRINTS | 41 | 57 | 17 | 2.3E-38 | ||
| PRINTS | 70 | 83 | 14 | 2.3E-38 | ||
| PRINTS | 88 | 105 | 18 | 2.3E-38 | ||
| PRINTS | 223 | 239 | 17 | 2.3E-38 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Aminoacyl-tRNA ligase activity | Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP. | ||
| Molecular function | Lysine-tRNA ligase activity | Catalysis of the reaction: ATP + L-lysine + tRNA(Lys) = AMP + diphosphate + L-lysyl-tRNA(Lys). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Biological process | TRNA aminoacylation for protein translation | The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, to be used in ribosome-mediated polypeptide synthesis. | ||
| Biological process | Lysyl-tRNA aminoacylation | The process of coupling lysine to lysyl-tRNA, catalyzed by lysyl-tRNA synthetase. The lysyl-tRNA synthetase is a class-II synthetase. The activated amino acid is transferred to the 3'-OH group of a lysine-accetping tRNA. |
Expression pattern of LotjaGi4g1v0302800.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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