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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0305900 |
| Transcript ID | LotjaGi4g1v0305900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Poly(RC)-binding-like protein; TAIR: AT4G26000.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q9SZH4|PEP_ARATH RNA-binding KH domain-containing protein PEPPER; TrEMBL-Plants: tr|A0A151T5F8|A0A151T5F8_CAJCA Poly(RC)-binding protein 3; Found in the gene: LotjaGi4g1v0305900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:68178157..68182616) extracted from Lotus japonicus Gifu genome v1.2.
TGAGGCATGACATTGTAGAAAGTGTGACGCAATCCCCCAATTAAACCCTTTCCTTCCTTCCATTTCATTCTCCGATGGCC ACACCGGACCCAATCCTCAACGGCACCACCTCACAACCACTCACCGAGCCACCCCCCGCCGCCGAACCTGAATCCGCCGA CAAAAGATGGCCGGGCTGGCCCGGCCACTGCGTGTACCGGATAATCGTGCCGGTCCTCAAGGTCGGCAGCATCATCGGCC GCAAAGGCGAACTCATCAAGAAGACTTGCGAAGAGACTCGAGCTCGCATTCGCGTTCTCGATGCTCCCCTTGGTACTCCT GATCGAATCGTGAGAATTTTCCTCTCCTCCTACTTCACTTCACCACCTTCCTAGGGTTTCCATTTTTCCATTTTCATTTC CTCTAAGTTATACGTTTGCTTCGTTTATCGGTTTCAACTTCATTTTGATTCATGATTGTTTAATTTGTTGATCACTTTCA GTTTAATCATGAATGTTGTTTAAATTTTTTGTAGGTACTTGTATCAGGGAAAGAAGAGCCAGAGGCACCTCTTTCTCCTG CAATGGACGCGGTGATAAGGATATTTAAACGCGTCTCGGGATTGGCTGAAATTGAAGCAGCTCCTGGGGCTACATTTTGT TCCGTCCGTTTATTGGTGGCGTCGACTCAGGCTATCAATTTGATTGGAAAGCAGGGCTCTTTGATTAAATCCATACAGGA GAGTACCGGTGCTGCTGTTAGAGTATTGACTGGAGGTATGCTTGCTAGTTGCTACCGCAGTTATCCAATTATACATGATA TATGTCTATGTTGTTTAATTGTTTACTTTACTTCTTCATTGCAAGTTAGCAACTATTGTTTTGTGTATTTTCTTTTTTGT CGTTTTGACTAATGTATTATAAAATTCGCTGAATTGTATCTTTAATTACTGGTGTTTGGTTAATTGATTTTCTATGGCAT GTTATTGAAATAAAGGGACTTCTTGTCTTTTCAGCCTTCCATTTGGTATGTAGTTGCCAGGTGCTTCTGCAAGGATTTTT TTCTTTGTTGCACGCATCTTTGAGTGGAAATTCTTGAACATTCATATATTAGTTATGCCATGTGTGAGATTTATTATTAT TATTATTATCATTCTAAAATAGTTCATTGGCTTTTCTTTTCTTTTTCTATTTTTTGAGCCTAATTAAATTGGCTTACCAA ATGCTTGCTTTTGGAGCCTAGTTTGCTTGTGAAATTCAATATGACTAGATATTAAGAGCATGGATAAGACTCTTTCAAAT GAGCTTATTTCAAAGCGATAAGTAATGATGTATCCACCCTAGATTTAATTTAAAATGTGCTGTGATCTTAACCCACTAAA ATTCTTAAACTCAAGGGTTGATAATACATCTTTATTTGCTCAATCAACGACAAACTCAACATAAAGTTTTTTCCTTTAGA GCTCTGTTTTTTTTTTAATGTTCCTAAAGAGAATGAGTTTTTTTCCCTCATATTTTTGGTTCAATGATGGAAGTGGTTCT GAAAACAAATCATTTTCGTGACAGATGAGCTTCCATCCTATGCTGCTGCTGATGAGAGGATTGTGGAAGTGCAGGGGGAA CCCTTGAAGGTCCTTAAAGCTCTGGAAGCAGTAGTTGGACACTTGAGGAAGTTTTTGGTTGATCATACTGTTCTTCCCCT ATTTGAGAAACCTGTAAGTTTATAGCTTTTAAATTTTAATTTTGGCTTAAAAAGTTGATTACAGTGCATATCTTGTAAGT TGGGCTGCTTTTTTATCTAGGTGGTGGGTTTAATATAAATATGTATTATGTAATCAAAGAATGTGTAGAATTTTTTTTTA CTGTTTATTAACGCTAAATATGTTTTTTTTTATAAGGGCAATGCTACAATCTCCCAAGACCGCCAGACAGATGCCTGGGC TGACAAACCATCACTGCATAGTGCTTCACAAACTAGCATTGTTGCTGATATTCCTCTTTCAAATAAAAGGGATTCTTTCT ATGCTGACCGTGAAAGTCAATTGGAGTCATTTATCTCTTCCTCGTCAATGTCATTATATGGGCAAGACTCATCACTTTCT GGTCTGCGTTCTTCAGCTCTTAGTCGTGCCACCCCTCCTATTGTTACAACGGTTAGCAGTTTTAAGCACTCGTATTTTAT TTATGTACTATTTCATATGAAACTTCCTTGGAAATGTGAAAAGTATCACATTTTGCTTTGTTTTGGGTCTATTTTTACCA CTTTTTTAAAAAATAATCATATATCATAATTTTCTACTAGGAGCTTACGCAAGGCGTTTTGTTAACTTCACTTCATGTCG TTCAAATTTTAATCGCTGTGATTTATGTTGTTTCTACTTATCAGGTAATACAAACAATGCAAATACCACTGTCCTATGCA GAGGACATAATTGGTATGCAAGGGTCAAATATTGATTACATTCGCCGTACTAGTGGAGCCATATTGACTGTGCAAGAGAG CCGGGTGCCTGATGAAATCATTGTGGAAATAAAAGGCACCTCATCACAGGTTCAAATAGCACAACAATTGATTCAGGTAG GAGATTTGGACCTATGAAAAGAAAGTTACATTTTTGTTGGGTTCTTTGACGCTTAGTTTTGTATGATAGTGAGATTTGCA TAAGAATATGAACATGAACATGCACATGCTTGGATAGGTATTTCCATATTTGTTTCTTTCAGCAAATGTTATGCGCATTA AAGTCATTTTTTCAGCAAATGTATTGCATTCTGTAGTTTTCTCTTAACATGTTTCTTGCTCATATCTTTGGTATCATGCT TCACTTGCTGCAATGCTTTAGGCACTTCCTATTTGTTGATATTCCCTGTTCTTCATCTTAGCAAAAAAAATTGTAACACT TAGAAGTTACCACTCAATAGTGCAATGGTAATACAAGTAGAAATGAAGTGGATCTATCTGTTTTTAAATATAGAGTAGTA GGAAATAAAAGAAATGAAGATGGTTTCACCTGTCTAGCTTAGTTGGGCATTTGTTCTTGGTATTTTGCTAGGAGTTGAAG TCTGCGCAAGAAAAAAATTAGTTTCCAATTTTTTTGTAAGTACGAGTTTAAACTTTCAGGATATTATTTTGTGGGCATCA CCTCGAGTAGAAATATGATCATTATTCAGTGGGCGTCAGCACAAGAGAAATATGACCATCAATTTTATTATTTTTGGATA CACAACCATTATTATTGAGTTTTACCTGACCCAGTCTGAATAAACCAATCCTTTGGAATTTTTTTCTCATCTAGCTGATG AGAATCGACTAACTTTTCCTATTCATATGCTAAATAGACTCATTCACCACTCACCAGACAACTTTGGAAAAAAGACACAT TTCATCTTATTCTGGGTTTTTGCTAAATTCATTTTGTTATCAGACAGATGAAATTAGTAAATTTTCCAATATTGATGTGT TCCTCTTGTAGCTGGTAGGGTGTGTTATATATACTTTAATGTCTATAAAGCTCCTCATTATATCCCGGCTGCCTCTTATG CTGGACTATGTTACTAATCTTCTTGGAAATAAGGGTTTACCATGATTATTATTCTTTTCTTTCAAACTTATTGCTCTTAA TTAACACCAAAGTATAAATTCATCTTGGAAGAATAGATTAATAAATACTTTGCTGATAGAAATGTCTTCCTGTGTTACAG GATGCTATAACCCATCACCAGGAACCTGTCGCTAGTAGTTACAGCAGGTTAGATGCAGGTCTGAGATCTTCTTACTCTCA ATTGGGAAGTTCATCGTATCCGTCGTCTTCATTGCCCTCGCAACCCTACAATGGGTATGGATCTTCTGGTCTAGGAGGAG GCTATAGTAGTACTTTCAGACTATAAATTGGTCTCCCTATGTTCACCAGGATTTCATAGAGCTAAAGTGTTATAATTGGG CCTGATCGGAGAGAATTGATGTATTAAGCCACCAAAAATACGTTCTTTTATCTGATGTAATGGGGCAATTTTCACTGTGG CTAAGAGTTGAGTAGTGCAATAGAAAATGTAATGAAATATTAAGTTATTAACCATTTTCATGATATTCAGTTTCCTTGTG TATAAGTGCATTGACATGAAAGCTTAGCTTCTATAGGGTTTTGAAGCTATATTATGTATCTGTTATTTTAGGGTTTGCTC TGCTTATTTTCTTACCTTGTCACTGTTGTAATATATTTGCTTAAAGCTGCCCTAATGTTAATGTGAGGAAAATTTTCAAT GCTATACTCCTTCGCAGTAAATTCAGACGCTTTGTATGTAAGGTCGGTTATTTGTCATTTTAAATTTTAATTAAAAATAA TAACTATCAAAGTTGTTCTACAATAGAATAGATGGCATTGGTTTATGGATTTGACTATTTTGCTATTTCAACAAAAAGTG CATTCTAACGGCAAACTACTAAACGAACTTTAATTATGTGTAGGATGCATTTTGTCGCTG
CDS sequence (LotjaGi4g1v0305900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCACACCGGACCCAATCCTCAACGGCACCACCTCACAACCACTCACCGAGCCACCCCCCGCCGCCGAACCTGAATC CGCCGACAAAAGATGGCCGGGCTGGCCCGGCCACTGCGTGTACCGGATAATCGTGCCGGTCCTCAAGGTCGGCAGCATCA TCGGCCGCAAAGGCGAACTCATCAAGAAGACTTGCGAAGAGACTCGAGCTCGCATTCGCGTTCTCGATGCTCCCCTTGGT ACTCCTGATCGAATCGTACTTGTATCAGGGAAAGAAGAGCCAGAGGCACCTCTTTCTCCTGCAATGGACGCGGTGATAAG GATATTTAAACGCGTCTCGGGATTGGCTGAAATTGAAGCAGCTCCTGGGGCTACATTTTGTTCCGTCCGTTTATTGGTGG CGTCGACTCAGGCTATCAATTTGATTGGAAAGCAGGGCTCTTTGATTAAATCCATACAGGAGAGTACCGGTGCTGCTGTT AGAGTATTGACTGGAGATGAGCTTCCATCCTATGCTGCTGCTGATGAGAGGATTGTGGAAGTGCAGGGGGAACCCTTGAA GGTCCTTAAAGCTCTGGAAGCAGTAGTTGGACACTTGAGGAAGTTTTTGGTTGATCATACTGTTCTTCCCCTATTTGAGA AACCTGGCAATGCTACAATCTCCCAAGACCGCCAGACAGATGCCTGGGCTGACAAACCATCACTGCATAGTGCTTCACAA ACTAGCATTGTTGCTGATATTCCTCTTTCAAATAAAAGGGATTCTTTCTATGCTGACCGTGAAAGTCAATTGGAGTCATT TATCTCTTCCTCGTCAATGTCATTATATGGGCAAGACTCATCACTTTCTGGTCTGCGTTCTTCAGCTCTTAGTCGTGCCA CCCCTCCTATTGTTACAACGGTAATACAAACAATGCAAATACCACTGTCCTATGCAGAGGACATAATTGGTATGCAAGGG TCAAATATTGATTACATTCGCCGTACTAGTGGAGCCATATTGACTGTGCAAGAGAGCCGGGTGCCTGATGAAATCATTGT GGAAATAAAAGGCACCTCATCACAGGTTCAAATAGCACAACAATTGATTCAGGATGCTATAACCCATCACCAGGAACCTG TCGCTAGTAGTTACAGCAGGTTAGATGCAGGTCTGAGATCTTCTTACTCTCAATTGGGAAGTTCATCGTATCCGTCGTCT TCATTGCCCTCGCAACCCTACAATGGGTATGGATCTTCTGGTCTAGGAGGAGGCTATAGTAGTACTTTCAGACTATAA
Protein sequence (LotjaGi4g1v0305900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATPDPILNGTTSQPLTEPPPAAEPESADKRWPGWPGHCVYRIIVPVLKVGSIIGRKGELIKKTCEETRARIRVLDAPLG TPDRIVLVSGKEEPEAPLSPAMDAVIRIFKRVSGLAEIEAAPGATFCSVRLLVASTQAINLIGKQGSLIKSIQESTGAAV RVLTGDELPSYAAADERIVEVQGEPLKVLKALEAVVGHLRKFLVDHTVLPLFEKPGNATISQDRQTDAWADKPSLHSASQ TSIVADIPLSNKRDSFYADRESQLESFISSSSMSLYGQDSSLSGLRSSALSRATPPIVTTVIQTMQIPLSYAEDIIGMQG SNIDYIRRTSGAILTVQESRVPDEIIVEIKGTSSQVQIAQQLIQDAITHHQEPVASSYSRLDAGLRSSYSQLGSSSYPSS SLPSQPYNGYGSSGLGGGYSSTFRL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 31 | 31 | - | – | |
| MobiDBLite | 1 | 17 | 17 | - | – | |
| PANTHER | 24 | 418 | 395 | 3.0E-189 | – | |
| PANTHER | 24 | 418 | 395 | 3.0E-189 | – | |
| SUPERFAMILY | 31 | 93 | 63 | 2.43E-12 | ||
| SMART | 37 | 110 | 74 | 8.2E-10 | ||
| Gene3D | 38 | 112 | 75 | 1.4E-13 | ||
| ProSiteProfiles | 38 | 105 | 68 | 13.376 | – | |
| CDD | 40 | 109 | 70 | 1.09798E-17 | – | |
| Pfam | 41 | 93 | 53 | 3.3E-10 | ||
| Gene3D | 123 | 199 | 77 | 5.5E-15 | ||
| SMART | 125 | 200 | 76 | 2.9E-11 | ||
| SUPERFAMILY | 125 | 208 | 84 | 2.48E-12 | ||
| ProSiteProfiles | 126 | 195 | 70 | 14.026 | – | |
| CDD | 128 | 196 | 69 | 1.68455E-16 | – | |
| Pfam | 129 | 195 | 67 | 1.2E-10 | ||
| SUPERFAMILY | 295 | 369 | 75 | 3.36E-13 | ||
| Gene3D | 296 | 375 | 80 | 2.3E-12 | ||
| SMART | 299 | 368 | 70 | 4.7E-11 | ||
| ProSiteProfiles | 300 | 363 | 64 | 13.523 | – | |
| CDD | 302 | 364 | 63 | 1.32164E-9 | – | |
| Pfam | 303 | 365 | 63 | 1.4E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of LotjaGi4g1v0305900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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