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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0311400 |
| Transcript ID | LotjaGi4g1v0311400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Kinase family protein; TAIR: AT5G57035.1 U-box domain-containing protein kinase family protein; Swiss-Prot: sp|Q8S8S7|PUB34_ARATH U-box domain-containing protein 34; TrEMBL-Plants: tr|A0A072US52|A0A072US52_MEDTR U-box kinase family protein; Found in the gene: LotjaGi4g1v0311400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:68763352..68769960) extracted from Lotus japonicus Gifu genome v1.2.
GTAAATGTCAGAACATAACAGAAAGTCAGAAAACTATAAACTCAAAGGTAGAGAACAGAACACAGTGAAGAAGGTAGTAA GTCAATTCATTACTCATCCATCAAACATACACCCACCCCACTTGTCCTTTCTTACAGAAAAATGGCCACCCTGAGATCGG TTGCTGTCGCCGTCAGTGGCGGCTCCGGCGCCGCCAAGGGTAGCCGGCGAGCTGTTCAGTGGGCGGTGGACAATCTCGTG CCTCAAGCAGATAGGTTCATCTTAGTTCACGTCATCCCCAGAATCTCTTCAATTCCAACCCCAAGTAACGTGCCTCAACC CCATTCTTCAATCATATATTCACTATTGTTCTTTCTAGCTCATACCTACTACAAATTTCAAAAGGAAAAAATAGTTTTTT TTTTGTTTACTTCAATTTTGAATTGGCTGTAGCAGAAAACAAGGATTTTTTTTTTCTTTTGAAGTACTGTTGATGGTTAA AAAATAAATTTTTAAGTTAATTGGGCAGGAGAAATTATACTTGAGAATGAGCTGGACAGGATGCAGTATTAGTGCAATGT TTGGTTTTGTAGTTTGTATCATTGTAAAGTTTGTTTCTTCTAATATCATGTAGGTTGTTTGGAGAACCTTTTATAATTTA TTTTAAAGCCAAAATACAATCCGGGGAGAAGCTTTTCTGAGTAGATTCTGGATGTCAGAACTCTGATTATGAGAAAAAAT AAACTGATTCGAATAAGCTAATTTTTGTCAAAACGACACGACTAGTATTTGAAGATGATTTTGAGTCTCAAACCATGATT TGAATAAAAAATAAAAAGTGTTTTGTGTTAATAAATTGTTGCTTTGCTGTTAAGTTGGATCATGATTTGCAAACTATTAT CTAATTATGTTTATGTTAGGCAATCACATTTTTGTGATACATGTACCTGTTTAGCGTGTGTTGTTAATTATATGTGATGA CTAGACATTGATTTTGATGACTGTAATGTATTGGTGGTGTTTTGGGATTTCTAATTCACAGCTGGAGAGTATATTCCCGT TTCGGAAGCAGATGCCGATGCCTTTGCAACTTATGTGGAGGATGTGAAACAAAAGTCTGAACAAGTCTTTGTTCCATTCA AGAAGCTCTGCGAATCAGAGATGGTGTGTTGTTCTGAAAAAGTGCATGATATGATTTTTAAAAAATAAAGATATGACTAT GAAAATATACTGATGTAGCTTAAATAAGAAATTTTCATTTATATGTAAAAATATACCTGTGGCTATTCATGATTGTGCAA TTTGAGAGTATCAGATCTCTAACTCTTTTAGTCCAGATTGACAGAATAAGATTATTGCTTTGGAAGAGGTAATTGGTGTA TACAACAGGTCTTAAACCTGTATCTCGGATTATCCAAGCAGTAACCCTATCAAGTCAATTTGTGTCTATCTTTTTCTTAA TACACATTGAGTAGGTGCTGCCCTATCAAAGTATGTGGATGTATATGAAAAGAAAGATAAGCATAAACATGAGAAGATCA TTTTCCATACAGACATCAGAACTTTCTTTATTTGTTTATGGGTCTGTGCTAGTTTCAACTTGGGATTGAAAATGAGGCAT GAGAATACGATTAACATGGGAATTTTTTAGATGGAAACCATGCTGCTAGAAGACGATAATCCTGCAAATGCACTTCTTGG ATTTGTCTCAGAGTCCGGGGTCCAAACTTTAGTGCTGGGTGACTCGTCAAATTTCATTACAAGGTATTAAAGCAAACATT TTGTCTTTCCATTTTATTGCTATCAGCCCCTGCACAAGAACCGTACAACATTGTACTCCATCTTGTCATGAACCAACTAC CCCCAAAACTTTATAAGTTGTTTGGAAATCCATTGGAAACCTTTCCATCATCCGTCCATGAGTTCCATTGTTCCAATGCA GAAAAAGTAGAAGCAAAAAATTGGCTTGTTTACTTGAACGTCCATTTCAGTTATGTCAAACTTTTTATCAAACATACCCT TAACCTGTTAGATGAAAACATATGAATAAGTTTATATCTAACATGTCTATCTCAAATGAAGTTTCATAACTATTCTACTA TATAATAATATAACTTACAATGATGGAAATTATAATGTGCTTTCATGTAATAGGTAAGCTTCATTTTTCCTTCCTTTATG TATTTGGTTGTTTAATTAGTGTTTTGGAACCAGAAGTTTGGACACTTATATGCTAAACCTGTCGCTACAACCAAAACCTT CCATTGGAAGCACAATGAAATTAATTTTTACAAACAGTTCAGCAAAGAAAGAGAAGGGATAGTAAAGCAATGTAGAACTG TTAGAAATATAAATATAAAACCATTTGCTGTTGGGTATGGGCCACATGAATGGTTTTATATTTTTATTTCTAACAAGAAC AATGCCCCTTTTACTTAGCTTCTCCTAAATTTGAGTTTTTCTGCCTCCAGGAAGCTAAAAGGACCTGGGATACCAAATAC CATTCTAAGATGTGCTCCTGACAGCTGTGATGTATATGTTGTATCTAGAGACAGAATTATATCAAATTTAGCTGATTCTT CATCTTCAAATCCTCATGGTATGACTGAAGTTCTTGCATTTCAATTTCTTAGTTTCTGCAGCTAACCCCTAATTGTGCGG CCATCATCTATTTGTTTTTTATGATGCTTATTATAGAATTGAGATCCTGAATAAGTTGTTGTCAAGTTTCTGGTTTTCTT ATTTTTCCTTCAACAGAGACTAGCACAAGCTACTTCATGTCTACTCAAGTAAATAAAGCAAACTATGGTGCTGGCTTTGG TGGAGAAATGTCTGGAATTAATTCATCCTCAATGGAACCCAAAATTCTAAAAAATTTCAGATTTTTATCATTATCAGACC GTAGTTACATTGGTCTGCAAACAAATAGTCGTAGGAGTTCTTTTGAGAATTCTATCCAAAATGAAGAAGAAATTCCAGAA TACATCGGAGATGATGTTGAAACTATTAGCCTCCACTCATTTGATTCCATTGCTTCTGCACAACTGGAACAGGTAACTTC ATTTCTTTTTCTTGGTTAAAAGGAACCGTGGGAGTGTGGGCTCACAGATTAAACATGAATTTGCAATAGTTTGTGATGAC TGATGAGTGGTGTTAATATGATGTGTATTTACGCAGTTAGGCATGCAAGAAGAAGCAGAACGGCTGCAGCTGGAGTTGCG GAATACCATTGCCATGTACAGACAGGTTTGTGAAGACCTAGCTCGTGCTCAAAGCAAGGTGAGAGTTCGATAATATTTGC TTTCTCTTTTGTTTGTAGAAAAAAATACAAATCCTGGTCTCTGATTCAGCTAAACTATCTCCTTTATTCCTCCTTTCTCC ATTTGCAATGCCTAAGCTGATGCCTACAAAAGGTATCACTGTAAATAATCTGTTAAATGAGTATATTGTTTTGCCATAAG AACATATACTAGGCATTTTGTGTTTACACTTTGGATAGCTAAATCTGATCTGCTTTGAAATAATAATAATAATAATAATA ATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATATTCAGACATAAATGTATGCCGCCACACCCATG TCTGCTTCATTGTGGCACAGTTACTAAAATTAGAGCTAAATCTATCATTTAGAGCTTTGGCGCTCCACATTGCGTCTGCC TAATCAAGGACATTTATGGTTTTATGACATGATTTATCTCTTTTCACATCCATGCCTTCACTTTCAGGCCTCTTTACTTT CTTCTGAGTCTCTTGAAGATTCTAAAAGAATAAATGCTTCCCTGAAAAGAGAGGAGAATTTGAGAAAGATTGCTGCTGAG GAGAAAACAAAGTATTTAGAAGTCAAGAAGGAACTTGAGGAGGCAAAAAATGTGCTTGCCAAAGAATCATATGAAAGACA GATGGCTGAGCTTAATGTCCTTAAAGAATCCATAGAAAAACAGAGAATTGTGGATACATTGCTCTCTAAGGACCGGAGAT ACCGAATGTACAGCATGGATGAATTCAAGACAGCGACAAACAACTTCTCAGAGGACTTGATGATTGGTGAAGGTGGGTAC GGGAAAGTATACAAGTGCAATCTTGATCACACACCAGTGGCTGTAAAGGTTCTGCATCATGATGCAATCAACAAGAAAGA GGAGTTTCTAAAAGAGGTTTTCTTTAAGCTTTGTTTTTTCTTCCTTTTAATTTTTTTATGAGATTGAGTTTATGAGACTT ATTAAATTGTCACGTTATATGATGTATATTGGAGGAGAAGATAATTAGTTCAGTTAGATAAGTTACACAATTAGATATCA GTTGCAGTTAGTTGTCAATTTCTCTCTCTGTTAGTTACTTAGTTAGATAAGGACAACTAATTAATTGTAGTCACACTCAC TAGTGTACAAATGAGCTCGGTTATAAACACATATATACCTTACTCTGCCTTAGTTGTATGCTATTCAATCATAAGTTGAA TTTCATTTCTCTCTCAATTTCAATTTCTCTGGGATTTGAAGTTTACTTAGAATATAGTTCTTCATGTCATATTCTAAAAC TTCTAGAGCATGAACTGGTTTTTAAAACTAACAAATGCAAGCTCAAGTATTCAAGTCTTGCGGAAGTTTTTAGAAGTTAC TATCCCACTACCTTCCGGAAAAGTTGTGCGATAAATAGTTACAAACTCAGCTAATCCTTGACTGGTGTAGCTTCATCAGG GTTTATTCTTTGTTCTCTGTGAGCAATAGCCCCCATTTGAAATCTTTCTTATTTAAAAGTTAAAGTTCTAGACTTGCACT CCCTTTGGAGTAAATTTCCATTGCTTCCTAAAGACATGTGCTTTTCAAATATCTCAAATGTATTTAATTTTTTAATGCTG CAATAACAAGATCAAGTGTTTCTTCCTAAATTGTCTTATTTGTTGCAGGTTGAGATTCTCAGTCAGCTACACCATCCAAA TATGGTTTTGTTACTTGGAGCCTGTCCTGAGAATGGTTGCCTTGTTTATGAATACATGGAAAATGGAAGCCTTGAAGACT ACATTCTCAGCAAAAATGCAAAACCACGACTTCCTTGGTTTATTCGATTTCGTATTGTTTTTGAAATGGCTTGTGGCCTT TCATTCTTGCACAACTCGAAGCCAGAGCCCGTTGTTCACAGAGATTTAAAACCTGGCAATATCTTGTTAGACAGAAATTA TGTGAGCAAAATTTCAGACGTTGGTTTAGCTAAACTCCTTTTCGAAGTTGTGCCTGACAATATTACAGAGTACAGAGAGT CGGTGCTTGCTGGTACTATCCACTACATGGACCCGGAATATCAGAGAACCGGCACTGTTAGACCAAAATCAGATGTATAT GCTTTTGGAGTTATAACTCTCCAGCTAATAACTGCTCGCCATGCACGTGGACTCATTTTGACTGTTGAAGATGCGATCAC AAATGGCTCCTTCCGTGATATTTTAGATAAATCAGCTGGAGATTGGCCCCTGGATGAGACATTAGAATTAGCTCAAATTG GCCTTAAATGCACTGCACTTAGATGCAGAGATAGACCTGAACTTGACACTGAAGTTCTTCCACTTCTCAAAAGACTTTCT GATATGGCAAATGCTAGTGAAAAGATGGGAAGAAGTAGTACATGCACGCCAAGCCAGTATTATTGTCCAATCCTTCAGGT ATAATCCTGCACTTATACGATGAAGGGCATGTTTGGATCATCATTACCATAATTGATTTTGAATAAAATTTATAATGGGA AAAGTGAGTTGAATGTGCAGTGATTTATTTTTGGATACGTGATGTAAAAAATGATTTTTGCAGGGTAATGTTGTGAAATC CAGTTGTAAAATCTCACAGCTGATTATGTTTATAGAAGCTACTCTTTCTAGCTTCTACGCATGATTAATTATGGGACTGA CATCAATTCTCTGAGATTACTCATAAACATTTATACTGTCATCCAATAGTGATGTTGCTCAATGAGAATTGATTCAGAGG TTCTGGAGAACCAAACAGACGCGAACATTTGGTTGTTGTGTTTCATATCTTTGTGATGCATGCCCTTTTCATATTTTTGT TCATTCTTGGCTGAATTGTGAGTGATGCAGGAAATTATGGATGAGCCGCATATTGCTGCAGATGGTTTCACTTATGAGTA CAGAGCAATCAAGGCATGGCTCAGCAAGCACAATGTATCACCAGTGACAAAGGTTAAACTCCAGCATTCTGAGTTAACTC CAAACCACACTTTACGTTCTGCCATTCAGGAGTGGAAGTCAGGAGCAACCTCTCTTTATTAGCATGCTGTGAATTCCTTC CCTCTCATCTCAATCTACTTTTACTGGAAGCATAAAAATTGTTTGAAATTGAATTGTACAAAAGTTTTGTATAACAATTT TCGGAATATAGATGCTCATGCTGCAAATTGTTTTCATAGAGATTGTATAGAAGCTTTTCTTAAGCCATTGTATTCAGCCA AATTACTGACATTTGTTGCATAAGAATGTAAGTTTATTATAGATGAAATAATAACAGTTAAGATATTCATGTATGTTAAG ACATTTTCCATAAGTATTGGCATTAACATATTATTATGATATAAAATGG
CDS sequence (LotjaGi4g1v0311400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCACCCTGAGATCGGTTGCTGTCGCCGTCAGTGGCGGCTCCGGCGCCGCCAAGGGTAGCCGGCGAGCTGTTCAGTG GGCGGTGGACAATCTCGTGCCTCAAGCAGATAGGTTCATCTTAGTTCACGTCATCCCCAGAATCTCTTCAATTCCAACCC CAACTGGAGAGTATATTCCCGTTTCGGAAGCAGATGCCGATGCCTTTGCAACTTATGTGGAGGATGTGAAACAAAAGTCT GAACAAGTCTTTGTTCCATTCAAGAAGCTCTGCGAATCAGAGATGATGGAAACCATGCTGCTAGAAGACGATAATCCTGC AAATGCACTTCTTGGATTTGTCTCAGAGTCCGGGGTCCAAACTTTAGTGCTGGGTGACTCGTCAAATTTCATTACAAGGA AGCTAAAAGGACCTGGGATACCAAATACCATTCTAAGATGTGCTCCTGACAGCTGTGATGTATATGTTGTATCTAGAGAC AGAATTATATCAAATTTAGCTGATTCTTCATCTTCAAATCCTCATGAGACTAGCACAAGCTACTTCATGTCTACTCAAGT AAATAAAGCAAACTATGGTGCTGGCTTTGGTGGAGAAATGTCTGGAATTAATTCATCCTCAATGGAACCCAAAATTCTAA AAAATTTCAGATTTTTATCATTATCAGACCGTAGTTACATTGGTCTGCAAACAAATAGTCGTAGGAGTTCTTTTGAGAAT TCTATCCAAAATGAAGAAGAAATTCCAGAATACATCGGAGATGATGTTGAAACTATTAGCCTCCACTCATTTGATTCCAT TGCTTCTGCACAACTGGAACAGTTAGGCATGCAAGAAGAAGCAGAACGGCTGCAGCTGGAGTTGCGGAATACCATTGCCA TGTACAGACAGGTTTGTGAAGACCTAGCTCGTGCTCAAAGCAAGGCCTCTTTACTTTCTTCTGAGTCTCTTGAAGATTCT AAAAGAATAAATGCTTCCCTGAAAAGAGAGGAGAATTTGAGAAAGATTGCTGCTGAGGAGAAAACAAAGTATTTAGAAGT CAAGAAGGAACTTGAGGAGGCAAAAAATGTGCTTGCCAAAGAATCATATGAAAGACAGATGGCTGAGCTTAATGTCCTTA AAGAATCCATAGAAAAACAGAGAATTGTGGATACATTGCTCTCTAAGGACCGGAGATACCGAATGTACAGCATGGATGAA TTCAAGACAGCGACAAACAACTTCTCAGAGGACTTGATGATTGGTGAAGGTGGGTACGGGAAAGTATACAAGTGCAATCT TGATCACACACCAGTGGCTGTAAAGGTTCTGCATCATGATGCAATCAACAAGAAAGAGGAGTTTCTAAAAGAGGTTGAGA TTCTCAGTCAGCTACACCATCCAAATATGGTTTTGTTACTTGGAGCCTGTCCTGAGAATGGTTGCCTTGTTTATGAATAC ATGGAAAATGGAAGCCTTGAAGACTACATTCTCAGCAAAAATGCAAAACCACGACTTCCTTGGTTTATTCGATTTCGTAT TGTTTTTGAAATGGCTTGTGGCCTTTCATTCTTGCACAACTCGAAGCCAGAGCCCGTTGTTCACAGAGATTTAAAACCTG GCAATATCTTGTTAGACAGAAATTATGTGAGCAAAATTTCAGACGTTGGTTTAGCTAAACTCCTTTTCGAAGTTGTGCCT GACAATATTACAGAGTACAGAGAGTCGGTGCTTGCTGGTACTATCCACTACATGGACCCGGAATATCAGAGAACCGGCAC TGTTAGACCAAAATCAGATGTATATGCTTTTGGAGTTATAACTCTCCAGCTAATAACTGCTCGCCATGCACGTGGACTCA TTTTGACTGTTGAAGATGCGATCACAAATGGCTCCTTCCGTGATATTTTAGATAAATCAGCTGGAGATTGGCCCCTGGAT GAGACATTAGAATTAGCTCAAATTGGCCTTAAATGCACTGCACTTAGATGCAGAGATAGACCTGAACTTGACACTGAAGT TCTTCCACTTCTCAAAAGACTTTCTGATATGGCAAATGCTAGTGAAAAGATGGGAAGAAGTAGTACATGCACGCCAAGCC AGTATTATTGTCCAATCCTTCAGGAAATTATGGATGAGCCGCATATTGCTGCAGATGGTTTCACTTATGAGTACAGAGCA ATCAAGGCATGGCTCAGCAAGCACAATGTATCACCAGTGACAAAGGTTAAACTCCAGCATTCTGAGTTAACTCCAAACCA CACTTTACGTTCTGCCATTCAGGAGTGGAAGTCAGGAGCAACCTCTCTTTATTAG
Protein sequence (LotjaGi4g1v0311400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATLRSVAVAVSGGSGAAKGSRRAVQWAVDNLVPQADRFILVHVIPRISSIPTPTGEYIPVSEADADAFATYVEDVKQKS EQVFVPFKKLCESEMMETMLLEDDNPANALLGFVSESGVQTLVLGDSSNFITRKLKGPGIPNTILRCAPDSCDVYVVSRD RIISNLADSSSSNPHETSTSYFMSTQVNKANYGAGFGGEMSGINSSSMEPKILKNFRFLSLSDRSYIGLQTNSRRSSFEN SIQNEEEIPEYIGDDVETISLHSFDSIASAQLEQLGMQEEAERLQLELRNTIAMYRQVCEDLARAQSKASLLSSESLEDS KRINASLKREENLRKIAAEEKTKYLEVKKELEEAKNVLAKESYERQMAELNVLKESIEKQRIVDTLLSKDRRYRMYSMDE FKTATNNFSEDLMIGEGGYGKVYKCNLDHTPVAVKVLHHDAINKKEEFLKEVEILSQLHHPNMVLLLGACPENGCLVYEY MENGSLEDYILSKNAKPRLPWFIRFRIVFEMACGLSFLHNSKPEPVVHRDLKPGNILLDRNYVSKISDVGLAKLLFEVVP DNITEYRESVLAGTIHYMDPEYQRTGTVRPKSDVYAFGVITLQLITARHARGLILTVEDAITNGSFRDILDKSAGDWPLD ETLELAQIGLKCTALRCRDRPELDTEVLPLLKRLSDMANASEKMGRSSTCTPSQYYCPILQEIMDEPHIAADGFTYEYRA IKAWLSKHNVSPVTKVKLQHSELTPNHTLRSAIQEWKSGATSLY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 4 | 157 | 154 | 1.4E-8 | ||
| PANTHER | 5 | 760 | 756 | 0.0 | – | |
| PANTHER | 5 | 760 | 756 | 0.0 | – | |
| SUPERFAMILY | 6 | 160 | 155 | 4.27E-8 | – | |
| CDD | 6 | 159 | 154 | 8.46228E-44 | – | |
| Coils | 267 | 287 | 21 | - | – | |
| Coils | 334 | 380 | 47 | - | – | |
| Gene3D | 388 | 480 | 93 | 1.9E-26 | – | |
| SUPERFAMILY | 391 | 663 | 273 | 6.34E-67 | ||
| SMART | 408 | 671 | 264 | 1.6E-27 | ||
| ProSiteProfiles | 408 | 696 | 289 | 33.983 | ||
| Pfam | 413 | 664 | 252 | 4.3E-41 | ||
| ProSitePatterns | 414 | 435 | 22 | - | ||
| Gene3D | 481 | 691 | 211 | 4.2E-44 | – | |
| ProSitePatterns | 526 | 538 | 13 | - | ||
| SUPERFAMILY | 686 | 757 | 72 | 1.32E-21 | – | |
| ProSiteProfiles | 690 | 763 | 74 | 27.821 | ||
| Pfam | 692 | 757 | 66 | 6.2E-16 | ||
| Gene3D | 692 | 761 | 70 | 2.5E-27 | ||
| SMART | 694 | 756 | 63 | 1.4E-24 | ||
| CDD | 695 | 735 | 41 | 2.8366E-17 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein kinase activity | Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP. | ||
| Molecular function | Ubiquitin-protein transferase activity | Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | Protein phosphorylation | The process of introducing a phosphate group on to a protein. | ||
| Biological process | Protein ubiquitination | The process in which one or more ubiquitin groups are added to a protein. |
Expression pattern of LotjaGi4g1v0311400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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