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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0313200 |
| Transcript ID | LotjaGi4g1v0313200.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|Q3ANH5|MUTS_SYNSC DNA mismatch repair protein MutS; TrEMBL-Plants: tr|A0A151QYF6|A0A151QYF6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0313200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:69005181..69010752) extracted from Lotus japonicus Gifu genome v1.2.
AAACTCCTGAGCTTAGCTTTTGTAATGTGGTGTTAATTCTCCGAAAAAAAGTTTGATGCACTTTAATTACACTGTTAACC GGTTAACAAATCAGTGCATTGTAAAAGATTAAGGACTAAAAGTACTAACACAAAGTCCATGAGGACCTGATTGTAATAAG ATTAGTGTTAGTTGATTAGTTGGTTACAACTGGATTTACAGCTGGCATTCAGTTAGTAGGTTAGAAAGTTTGTTACAGGA TAATTGATGTATAAATAGATTGATCCAGTGTAAATTCCGATTATGTTGAATAAACAAGAAATTCATCTTCTTCAACACTG AAATTTCTCTGTTGAATTCTTTGATGGTATCAGAGCCCTAACGTGGGCTCTGCCATCACCAGCTTCCGCAACCATGGTGC GTCAAGCACAAGCTAGCAACAACAATGGCAATCCGCAACAACATGTGGTCTTGGAGCCAGCATAGAATCCGATTTCACCG TTCTACATCCATTCCGGTGAAAATCCCTCTGCCACAATGGTGACACCACCTCTCAGTGGCAGGAACTACAACGCTTGGGC GAGATCGATGAAGAGAGCCCTAGTAGCGAAGAACAAGTTCAAGTTCATCAATGGCGAAATTCCAGTCGCAGTGCCTGGAG ATGCAAATTATGAAGCGTGGGAACGCTGCAATAGTCTAATCCATTCCTGGATCATCAATTCGGTAACATCTTCCATAGCC AATAGCATAGTTTTCGTTGAGAATGCATGTGATGTCTGGAAGGATCTGCGTGATAGGTTTTCACAGGGCGATCTAGTTCG AATTTCTGAATTGCAAAATGAAATAGGAAATTTGAAACAAAATACACTATCTGTGAATGATTACTACACTGAAATCAAAA CACTTTGGGAAGAATTGGAGCAATATCGCCCAATTCCACAGTGTAGATGTGCAGTACCCTGTAGATGTGAAGCAATTGAG CATGTTAAGATGTTTAGGGAACAAGATAATGCTATCCGGTTTCTCTTGGGACTGAATGAGAGTTTTGTAGTGGTAAAATC ACAAATATTAATGTCGCATCCTTTACCTTCCATAGCTAAGATAGTATCACTAGCTATGCAGCATGAAAGGCAATCTGATT TTGAAGAAAATGAAGATTCTAAAGCACTGGTTAATGCAGTAGAAGGGAAGAAGTCTTATGGAAAAGGAAAAATTTCAGGT TCAGGATACAAGAACATTGGAAAGTACTGTACACATTGCAAGAAGCCAGGGCACACTATTGAAGTTTGTTATAGACTTCA TGGCTATCCTACAACTTTTAAACCCAAGGCTGATTCAAATGCTGTTAGTCATGTTAATAATATCTCTGGAGGTTATGATT CTGCAGATGATGCAGATGAAGGCTCAGTTTTGCACAAAGAAAATGAGGATCTTTTCACTGCTGATCAGTATAAGAGGATC CTGACTATGATACAACAAGCAACAGTTTCACAGAAGTCTAAAGACATTGGAGGTGCTTCTGTCAATCATGTGATCAAATC CAGATTCTGTGAGGCAGAAACCACTGGTCATGGTAAGCCTCTTGCCTTATCTTGTTCACAGCAATATAATACTAAGGATT GGATTATTGACTCTGGAGCTAGTGACCATATATGCTTTGACAGAATGAGTTTTGATACATTGACCAAGATAAAACCAATT AGTGTAAAATTACCTAATGGTGCATCTATCCAAACTAGCTATGCTGGCACTATTAAGATCACTGACTTAATTGTGCTTAC ACATGTTCTGTTTGTACCTAATTTTACATACAATTTGATCTCAGTTCACAAGTTAGCCAAAGCAACTGCTTTTGAAGTCA TTTTTGGTGAATTTACCTGTTTTGTTCAGGATGTTCACACCAAGAAGAGGATTGGTTTGGGTAGCTTACAAGAGGATGAG CTTTACCATCTAGTTGTTGCTGGTTTTTCTAGTACTTTTTTTGCTGTTAATAATGTAAATACTGAAATAAATAGCTCAGG ACAGGTTATTCCTCCTGGTGCATTGTGGCATTTCAGACTAGGTCACTTGTCACATGATAGGATTCATGCATTGAATGCTT TGTACTCTTCTATTTCTGTAAATAAATCACTTGTTTGTGATATTTGCCATTTGGCAAAACAAAAGAAGAAAATGTTTTCA GAAAGTTTGCATAATGCAAAAGAATGTTTTGATCTAGTGCATATGGATATTTGGGGCCCAATTGCCACTTCTTCTATTCA TAATCATAAATACTTCTTGACTGTTTTGGATGATCATAGTAGATTTGTATGGATTGTGTTACTTAAGAGTAAAGGAGAGG TTCAACATCAGGTTAAGAACTTTGTTACTCTAGTAAAGACACAGTTTGGTCGAGCTATTAAGGTCATCAGAAGTGACAAT GGACCAGAGTTTAGCTTGCCAGATTTCTATTCTGCTCAGGGCATTCTACACCAGAAAAGTTGTGTTTATACCCCTCAGCA GAATGGGAGGGTAGAAAGAAAGCATCAACATATACTTAATATAGCAAGGGCATTGCTTTTTCAATCTAGTCTACCTAAGA GAATGTGGAGCTATGCTGTTTTGCATGCTATCTATCTCATGAACAGGATACCAAGCAAACTGTTATGTGATAAATCTCCT TATGAATTACTTTTTGGGGAGAAAGCAGATTTACAGCTGATTAAAGTTTTTGGTTCACTATGCTTTGCAAGTACTCAAAG TTTTAATAGATCAAAGCTAGAACCAAGGGCAAGAAAATGTGTTTTCTTGGGGTTCAAGCAAGGGATCAAAGGTTATGTAC TTTTGGACTTGAATTCCCATGAGATTTTTGTATCTAGAGATGTGGTCTTCCATGAGTGTGTTCTGCCTTATAAGGGTAAA GCATCTCAACCCTGGACCTGTTTGGATTTGCAAACACAAAGTCAAGATACTGCCAACAAAGCCAGTTTTGATACTCAAAG TGAAGTACTTGAGGGAGAAAGGATTGTTTCAGTTACAGAACCTATTTCCTCCATAGAGACATCCTCATCTCAGTCTGAGA AATTGTCATCTTCATCTCAGGATACTTCATTGCAAGCTACAGATTTGGAGAGAAATGATTCTATTCTCAGAAGATCAACC AGAAATATTAAAAGGCCAGCATATCTCCAAGGCTTCCAATATGATTCTTTGCCTTCCAGAAGTAGTACAGCTCATAGCAT TACACAGTATTATTCTCATGATAAGCTGTCTTCTGCACATAAGTCTTTTGTTTGTAATTTGTCTACAGATCAAGAACCAA CTACATTTGCAGAGGCAAGTCAACATTCTCACTGGCAAGAAGCTATGCAAGCAGAAATATCTGCATTAGAGAAGAATGGA ACTTGGAAGCTTGCAGACTTACCTCAAGGAGTAAAACCTATAGGCAGTAAATGGGTCTATAGAATTAAGAGGAATGCAGA TGGTAGCCTTGCAAGATATAAAGCAAGATTAGTAGCAAAGGGGTATAATCAAATAGAAGGACTGGATTATTTTGATACCT TTTCCCCTGTAGCTAAGCTTACTACAGTAAGAGTTGTACTAGCCCTTGCAGCTGCAAAGAATTGGCATTTACATCAGCTC GATGTAGATAATGCATTTCTGCATGGTACACTAGATGAAGATGTTTATATGGAAATTCCTGCAGGAGTCTCTTCAACTAA GCCTAATCAAGTATGCAAATTACAGAAATCATTGTATGGGCTTAAACAAGCAAGTAGGAAATGGTATGAGAAGTTATCTT TGCATTCGAAGAATCTTGGTTATTCACAAACATCCTCAGATCACTCTCTGTTTGTCAAATTCCAAGGGGATCATTTTACT GGGTTACTTGTTTATGTAGATGATGTAATACTGTTTGGAAATTGGCTTGCAGAATTTCAGCTGGTAAAAGATTCCTTGCA TCAGGCTTTTGGAATTAAAGATCTAGGTGTACTTAAATACTTCCTTGGCTTGGAGGTAGCACATTCTTCACTGGGAATTT CTCTTTGCCAGAGAAAATATTGTCTAGATCTCCTGCAAGAAACTGGAACATTGGGCAGTAAGACAGTCACAACACCCCTA GATCCAGCATCTAAATTGGTTCATGACCAAGGAGAACCATGTATTGATGCAGCTGCATACAGAAGGCTAGTGGGAAGATT ACTCTATCTTACTACTACAAGACCTGATATTTCATTTGCTACACAGCAACTGAGTCAGTTTATGAGTAATCCAATGGACA CTCATCATAAAGCAGCATTAAGAGTTTTGAGGTTTTTGAAAGCATCTCCTGGGTTAGGTCTTTTCTTTCCAAGGAATACT CCTCTTTCTCTTCAAGGGTATTCAGATGCAGATTGGGCTGGTTGCTCAGACACACGAAGATCCATTTCTGGTTATTGCTT TTTCCTCGGAGGTTCCTTAATCTCATGGAAAGCTAAAAAAGCAAACTACTGTTTCTCGATCTTCAAGTGAAGCTGAATAT AGAGCCTTAGCCTATGCTACTTGTGAGCTACAATGGCTACTTTATCTTCTTGAGGATCTTAAGATTACTTGCACAAAAAC CCCAGCTTTGTTTTGTGATAATCAAAGTGCATTGTATATAGCAGCCAATCCTGTCTTTCATGAGAGAACAAAGCATCTTG AGATCGACTGCCATGTTGTAAGGGAGAAATTACAAGCTGGAGTTCTCAAGCTATTGCCCATTCCTACTGCTCTTCAAGTG GCTGATATCTTCACTAAACCTCTTCAACCACGGATTTTCCAAGGGTTCGTTGCAAAACTTGCCATGGTCAATATCTTTCC ATCTTCAGCTTGAGGGAGGGTGTAAAAGATTAAGGACTAAAAGTACTAACACAAAGTCCATGAGGACCTGATTGTAATAA GATTAGTGTTAGTTGATTAGTTGGTTACAACTGGATTTACAGCTGGCATTCAGTTAGTAGGTTAGAAAGTTTGTTACAGG ATAATTGATGTATAAATAGATTGATCCAGTGTAAATTCTGATTATGTTGAATAAACAAGAAATTCATCTTCTTCAACACT GAAATTTCTCTGTTGAATTCTTTGATGCATCAAAATTAAACTCTAATAATCTAATTCTCCACCCTCTTCCCTATGTATAA ACAAACTCCTGAGCTTAGTGGCGGCTCTTTTATTTTAGATAGGGTTGTAACGATGTTTTCTCAAATTTTCTAGTGGCTTA TGCTTGGTCTTTTGGTGTCATGATTAAAGTGAGTTTTACTTCATGTAATGTTTTCAAGTGTATAATTGAAGCTTGCCCAG GGCACTGCCTTGACAAGTATTGGAGGCAATAATTTAGTTCACGCTAGAACGAGTTTTTCAATCAAGTTGCAAAGTATGTT TTATTGATATTTAAGTACTTTTTAAATTGCTTTCTCTTGTTTTGGATAATAATTAATTGTTGATAGGAAAGCCAGTGGTA AAGTGAGGATAGGGGAAGTGATTAAGACTCACGTGAAGCAAAAAATCTAAAAAAGCAAATCGCCTATCTAAAAGAAAAGT TGCCCTTCCCCCTTAGGTTGATATTTTTGCTCGGAGTAAGATTGCAAATGCA
CDS sequence (LotjaGi4g1v0313200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGACACCACCTCTCAGTGGCAGGAACTACAACGCTTGGGCGAGATCGATGAAGAGAGCCCTAGTAGCGAAGAACAA GTTCAAGTTCATCAATGGCGAAATTCCAGTCGCAGTGCCTGGAGATGCAAATTATGAAGCGTGGGAACGCTGCAATAGTC TAATCCATTCCTGGATCATCAATTCGGTAACATCTTCCATAGCCAATAGCATAGTTTTCGTTGAGAATGCATGTGATGTC TGGAAGGATCTGCGTGATAGGTTTTCACAGGGCGATCTAGTTCGAATTTCTGAATTGCAAAATGAAATAGGAAATTTGAA ACAAAATACACTATCTGTGAATGATTACTACACTGAAATCAAAACACTTTGGGAAGAATTGGAGCAATATCGCCCAATTC CACAGTGTAGATGTGCAGTACCCTGTAGATGTGAAGCAATTGAGCATGTTAAGATGTTTAGGGAACAAGATAATGCTATC CGGTTTCTCTTGGGACTGAATGAGAGTTTTGTAGTGGTAAAATCACAAATATTAATGTCGCATCCTTTACCTTCCATAGC TAAGATAGTATCACTAGCTATGCAGCATGAAAGGCAATCTGATTTTGAAGAAAATGAAGATTCTAAAGCACTGGTTAATG CAGTAGAAGGGAAGAAGTCTTATGGAAAAGGAAAAATTTCAGGTTCAGGATACAAGAACATTGGAAAGTACTGTACACAT TGCAAGAAGCCAGGGCACACTATTGAAGTTTGTTATAGACTTCATGGCTATCCTACAACTTTTAAACCCAAGGCTGATTC AAATGCTGTTAGTCATGTTAATAATATCTCTGGAGGTTATGATTCTGCAGATGATGCAGATGAAGGCTCAGTTTTGCACA AAGAAAATGAGGATCTTTTCACTGCTGATCAGTATAAGAGGATCCTGACTATGATACAACAAGCAACAGTTTCACAGAAG TCTAAAGACATTGGAGGTGCTTCTGTCAATCATGTGATCAAATCCAGATTCTGTGAGGCAGAAACCACTGGTCATGGATG TTCACACCAAGAAGAGGATTGGTTTGGGTAG
Protein sequence (LotjaGi4g1v0313200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVTPPLSGRNYNAWARSMKRALVAKNKFKFINGEIPVAVPGDANYEAWERCNSLIHSWIINSVTSSIANSIVFVENACDV WKDLRDRFSQGDLVRISELQNEIGNLKQNTLSVNDYYTEIKTLWEELEQYRPIPQCRCAVPCRCEAIEHVKMFREQDNAI RFLLGLNESFVVVKSQILMSHPLPSIAKIVSLAMQHERQSDFEENEDSKALVNAVEGKKSYGKGKISGSGYKNIGKYCTH CKKPGHTIEVCYRLHGYPTTFKPKADSNAVSHVNNISGGYDSADDADEGSVLHKENEDLFTADQYKRILTMIQQATVSQK SKDIGGASVNHVIKSRFCEAETTGHGCSHQEEDWFG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | 2 | 35 | 34 | 3.2E-10 | ||
| PANTHER | 23 | 301 | 279 | 4.8E-73 | – | |
| PANTHER | 23 | 301 | 279 | 4.8E-73 | – | |
| Pfam | 53 | 166 | 114 | 1.7E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0313200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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