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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0321700 |
| Transcript ID | LotjaGi4g1v0321700.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 3-oxoacyl-[acyl]-carrier-protein] synthase; TAIR: AT1G74960.1 fatty acid biosynthesis 1; Swiss-Prot: sp|Q9C9P4|KASC2_ARATH 3-oxoacyl-[acyl]-carrier-protein] synthase II, chloroplastic; TrEMBL-Plants: tr|D8KXZ0|D8KXZ0_ARAHY Beta-ketoacyl-ACP synthase II-1; Found in the gene: LotjaGi4g1v0321700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:69976561..69983460) extracted from Lotus japonicus Gifu genome v1.2.
ATCGTTTGTGCCTGTCATTTCACTTGTGAGAAAGCACTTAGCCGGAACGACTCACACACTCACTCAGATTGCAGAAAACA CAGAGATCGATTCATTCAACCTTCTTCTTCCTCTTCTTCCTCTTCACCTTCCTCCATTTCAATCTCTACATGTGTCTCTG TTTCTCGCTTTCATCTTTTCATTCTTCTTCTTCAGCTTCTTCTATAGCTTCTAGTCCTTGAAAACTAGCTTCACAATCTC AACCTTCTTCTTCCCTTACTGTATTGATTTCATTCCATCCATGTCGATGGCCGGAACCTCATCCCTCTGCACGTGGCTCG TCGCCGCTTGCATGTCAGTCACGTGCGACGCTGACCGTCCCAGAACCTCGCACGCCATGTTCCGCTCCTCCACCAGGTCC CGGAGAACCACCAGAGCCTTCATTTCATCGCTCTACGGATCCACCACCATTCAGGGTCTCATCACTTCCCTTCAACCCTG CCACAATGCCTTTGGATCCACAACTTCTTCCACTTTTAATCGCAGGCACAAGCGTCTCAATCGACACCCTCATTCTGGTA ATCTTCAATTTCCTTACAAGTTTAGCTTTTTCAGATTGTGGATTGTGTTCTTTATAATGGGTATTTCTTCATTTTTTCCA TTCTACACTTGATCGTCACATCTGGGATTTTCATGATTTTCGTTTGGATGCGTTTTTTTTTTATTGAACTGTTCATCAAA ACCTCGTGGTTTTGGTTGGGATCTTTGTCTTTGGTTGGTTTGTTTTGTTTTTGTATTATGTGGATTTCTGGTTTAATTCC AATGTTTGTTTCACCTGCTTCATTGTGTTAAGGAAACTAACGTGGTTAGTACTGGGTCGGTACAACACACTTGTCACTCA ACTCTACAATTTGCCTTTCTCGTATATATCGAATAGAAAAAAATCTATTCTAATTTTTTTATAGATTAATTGTTTTTTAT TCATCTTATGGTCATCACTGCTGTATTCTTGCAATTTCATGGAGGTTGTTTTCATCACATGTTGAGAAAGTTACTTTAAG CAAGATAAAGCCCTTGTGAGTTTTCCTTTTTACACTCAATTAAGAGTTCCAATGAAGTGTTCCTGAAGCTAATGTTGAAA ATATCGCCACATGATGGCCAACTCTGTCTCTGGTTGGAGGATGAATTTTTTTACTATGATTTGGTTCCTAGTTCTTCAGT TTTTTTCAACTTTCTGCACATGTCTGTACTCTGTGGTACTAGGATGCTTTTCTCATCCATGTAGCTGCTTGGTAGGGTCT GGTCCAGGAATCTATCTTTTTTTATTCTAAACAATGGATGGATAGTTAAGACTCTGCTTCAATTTGACAAGGCTTCAATT TCATAGCATTTTTGTTGTTTAAGGTTTTCTGTAACCTGGTTGCTTAAACCTCAGCATATTTATTCTTCGTCAGTAGTTGT CTTCATTGACCAATGTTAATGTGTACCTCCTTGAAAATTGAAGAATATGCTTGCATTACTTAGTTTTAAGCGTTTGACTT TTTCTTTAATGCAATGGTTTTGGCATTACATTTTTTGAATGATAGGCCTCCTAAGTTGTGCTGATGTAGAAGGATGCCAA TTTATAGACATGACTTTTATGTCCCACTATTCATATTTCATGTTCCAATTGCTCAGTGCTGACCTATGGCTTGGAATTGT AAACTTTCAAGGTAAAACGATGGCCGTAGCTTTGGAACCTGCCCAAGAAATCACAACTCTGAAAAAGCCTCCTACAAAAC AAAGGCGAGTAGTTGTGACAGGCTTGGGCGTGGTTACACCACTTGGTCATGATCCAGATGTCTTCTACAATAATTTACTC GATGGTGTTAGTGGCATAAGTGAGATCGAGACTTTTGATTGTGCAGAATTTCCGACAGTAAGTTATTTGAACTAAATTTT TTTCAGTTGTTTCCTGCTGCAGACATTGTTCTGAATACTCTTTTATTTTTTTCTCTCTAGAGGATAGCTGGAGAAATTAA GTCTTTCTCAGCGGATGGCTGGGTAGCACCAAAACTTTCAAAGAGAATGGATAAATTTATGCTTTACATGCTTATAGCTG GTAAAAAGGCCTTGGCTGATGGTGGGTTTACTGAAGATATAATGAATGAGTTAGATAAACGCAAGTGTGGAGTTTTGATT GGCTCAGCAATGGGTGGCATGAAGGTGACCGACATTTACTCTTCCGCATGTTGAGATTCAAAAGTTGAAGAAAAATTAGG ACTTTTGTTGTTTTCAGTAGTTCAATTTTATATCTAATAGCATCATGAGATTGTGAGTAAGTTGTAACACCTGTTGGTAT TGTGGATTAAATTTACTGTTGAATGCAAATCAAAATGGAGCCAGGACTATATTATACGTTGCAATGTTATGGCATTGATT GGTTGACCATTTTGTTATTATTCTGTGTCTGAACAGGTTTTCAATGATGCTGTGGAAGCTTTACGAATATCATATAAGAA GATGAATCCTTTTTGTGTACCTTTTGCCACAACAAATATGGGTTCTGCCATGCTTGCAATGGATCTGGTTAGTTTAAATA GATTTTAGCGCTTACTATAGACCATAATTAGGTGTCTTAGTTTTACTCATAAGCTTCTTTATTTTTCCTGGTGATGTTTG ATTAATGATTCTTTTATGGATTGCAGGGATGGATGGGCCCTAATTATTCTATCTCTACAGCTTGTGCTACAAGTAACTTT TGTATACTGAATGCAGCAAACCATATCATTAGAGGTGAAGCCGTAAGTATTTTACTTTGATACTTGCTCTTAGGATCCCG GATTTCTTCCCCAAACAATGAGATTTTCATTTTATCCAAAGGTGCTAACAAATTTAATAATTGTGGAATATTTCTGCAGG ATGTGATGCTTTGTGGTGGCTCAGATGCTACTATTATACCAATTGGTATTCTTTTGTTACTCATTTTATGGCTTGTATGG AGTCATCATGCCATGAACCTGACATGTATCCTACAATCATTGATGCAGGTTTGGGAGGCTTTGTGGCATGCAGGGCACTC TCACAGAGAAATACCGATCCTTCCAAAGCTTCCCGCCCTTGGGATATAGTAAGACTATTACATTCTTGGTGCTTTTTACC CCTACTTAAATTGGATGGGTATGCCTTGTCTTTTGTAATAATTTACAACGGTTACCTTACATAAACCTTTGTGAAACTTA GAAGGTTCATCAAGCAAACTTTGTTTGTTAAATTAAGCACATTGTAATTTATGGGAGTCACTACTTCAGATATGTGATAA GATTCCGAAGCTCTTCTTCAGTGATAAGATCTGTAGGACTTTTTTGTGTTTATTTTAGTGGTTATCTTTTTTGTTTTAGA ATTCTTTATTCTCCTTATTTTTGTGCTGTCTTCTTATTCTATTTCTAATACTGCTTGTTTTATATAATAAAAATTAAATC CAGAAACACCAAAAGTTACATATTATTTGTGAACACCTAGGATACAAAGACACCAACTGCCAAAGTTTAAAAAGCAATAC AGCAATATGAATCTGTGAAGTCATGCAGATCTAATAGAACAAAAGACAACTAGAAATTATGTTCAATTTCCTGAGCTGAC ATATAGTTTCAGTTTTGAAAAACACTAATTAAACTTGAATTTATTTTAAAAAAGTAATCGGTACATGAATTGCTATGTCA CAGAAACTAAATGCTTGCAGTTTTGGTCTTTATATCCATTCTATTCTACACCTTGTCCTGATCTTGTGTTACTAACCATC AGCTAATTGTTATGATATTACAGAATCGTGATGGATTTGTCATGGGGGAAGGGGCTGGAGTTTTGCTTTTAGAAGAATTG GAGCATGCTAAGGTATTTCTAATTTGATTTAATAATTGGTACCTTGTGTTAGGATTTACCTAATTCTTCAGTTCCCTCCA ACAGTATTTAGAGCGCTTGATGCATCTGTTGTATCTTGTTTTAGGATTGTTCTTCATACTTGTCATCACTTCACTGCCTA TTATTTTTCATTTTACTGCAGTCTTGATTTGACATTATATCATCCCTAAATTAAGTAAATATATCCCTTTTGGCTATAAT TTGTTAAACTATCCAATTTTTTACCTTGCAGAAAAGAGGTGCAGTCATATACGCCGAATTCCTTGGTGGGAGTTTTACCT CTGATGCATATCATGTAACTGAACCACGTCCTGATGGTAAATATTAAATCTTCAAGGTCCTTTAATTTATATAATTTTAA AAGCACAAATCATCTATAAATGTACTGATCACCTTCGTATAAACATCTTGATGAACATGGTCTGGGTTTAAAAGTACTTC TACAGTTCTACCCTTTAGGATCTCAAGAGAGAACAGTGAAATAAGACAAGCGTATGATATTTTCTTCTTGGTTCTTATTA TATTGCTTACTTGGTGGAGTAATTTCATGACAATAATAGTATAGAAGCTTAAAGTTGCATATCTTTAGTCTAACTTTTGT TTACTCATGCTATGTTTCAACACTTCTGTTCATATGGATGCCTATGCTTCTATTTGTGTAGCATTTGTCAGTTTGAGTTC ATAAAAATTAGGCTTTTGTGATGAAGCTGTTGCACTGTCTGGAAATGCAAGTGCATCTTCTATATTTGTCAAATCATTTA AGGCATATTATAAAAGAAAAGAAGCGCTTGTATATCTTTCTGGTCACTTATAAATTATAATGCGAATGTGGAGCTTCTGC ATTCAGACTTGTTTTATGTCACATGTTTCTTTCTGTTAGTAGTTATTACAAATTCTGTGTGTGATTGAGACGTTCAAAAA TCATCCTTTGTGATCTTAAAAACTTTGGAATGTATTACACTTTCATCATGACAATTTTAGAGCTATGATTCATTCACACT TGCACTTCATTTCCACCTTCAATCTATATATCTATCTCTCTCTTCTCTTTCAATCATATAATCAATCAAATCTCTTACTC TATCTCTTACTCTCTGCACTTCATTTCCACTCCATTTACACTTTTTGGGGAGTGTGAATGAAACTTTATTGACAATTTTA GTAGACTAAAAGTGATTGACTACTTGGTGAGAAATGACATTCTTGGAGATCAGTGACTCCAGACTCAGGCTGGAACTTAT GTTTCTTTATCCCATCCTCAAACAGGGGCTGGTGTAATACTTTGCATTGAGAAGGCATTAGCTCAGTCTGGAGTATCAAG AGAGGATGTGAATTACATAAATGCACACGCCACATCCACACCAGCTGGAGATCTTAAAGAGTACCAGGCTCTTATTCACT GTTTTGGTAAAAACCCCGAGGTAAATTTCCCTTTTCATGTTCTTATATGACTTGCTAGCCAATTCAAAGATAATTGATTT GGTGCTCTCTTTAATTGTTTTGATTTGCACTGTTACTTATACTGCCATGCTTAGCAAAAGATGTCTTAATGTACAGCTAA AAGTGAATTCCACGAAATCTATGATTGGTCATCTACTAGGAGCAGCTGGTGGTGTAGAAGCTGTAGCAACAATTCAGGTA AAAAAACAAATGAATCACTTTTTTATGAAATGTGAACAGTTGGTTTCATTTTTACAATGAAACATATCTGATAGCATGTT TTGATCAACTTTCCTTTTATCAGAATCAATTCTTAAACCCAGTTACTGACATAAGCTACTCCCCAAATTGATTCTGGCTC TAGAATCAGTTATAGAGGAATTTTCAAACATGCACTGATCTATGTTTTTCCATTATGTAGGCAATCAGAAGTGGGTGGGT TCATCCGAATATCAACCTAGAAAACCCAGATAAAGGAGTGGTATGTTTACCTGTTGCAACATCCATCCTTTGTTTAAAAT TGTGCATTTACCGGGTTTACAGTTATCTAATTTGGTTGTCTAATAAACATATTTAAACCAGGATGCTGCAGTGCTTGTTG GCCCAAAGAAAGAGAGGCTGGATATCAAGGCAGCCTTATCTAATTCATTTGGTTTTGGGGGTCACAATTCCTCAATCATA TTTGCCCCATATAAGTGAAACAACATATTTCACATAGTACTACTTTCCTATAATTATAAACAAGGTATGTTTTGTTTGAT TAAAAGTAGGTTATGTTTTGGTATTTTTTTTTCTTCTACATTCTAAGTCTGTTTTTATTATTTTCATCCCAGTTGCTGAG TACCCAAGGCAATGTTATTGCACCCTAACTCTACTGTTTGGTTGGGTGGAAATATATGCCGTGGGCAAACAAACAAACAC TATTGGGATGGCCATGTGTTGTACCTACAGAATCAGAATGCTCAAGAGAATATCTAGTGGTAGCAATGGGGCCAATCTAT CTATATCTTTATAGCATGCATGAATGGCTAGAGTAGGAGTAAGCATGACCCTATTTGATGTAACCTTTTAACAACCTCTT TCATGGGGTCATATTACTGTGTGTTGGTTTATTCCCATTTGTATAAATAGACCCTCGTGGCTAGGCAATAGTAGTGCAAT AAACGGGTTTCGGTGCTTCTTAACTGAAATTTCTTGAGGTTGGTTGGTTGGTTTCAATTGAATGAGGATTTTTGACTTTA TGGAAACTGAAACTTACAATTGAATTTATAGTGACTTCGTCTTCCCAAGACTTTTCATGACCAACTGCACGAATTATAAT TCATGTTTCCAACATGGAGAATTTTCTCTTCAATAAATAAGTAGTTGAGCTAAGTGAGATATTTCTCAAGTTTCATTAAC AATAGGACAATACATGTCTGTTGTTTGAAATTTTTGTCCTTGTAACATGCTGCTGTCGTCCATGTTTCAAATTTCGTTTT CAAAGTTTCTTTTGTTTATAATCAACAATAACAAAATTAGTGCGGTAATGGACTGCTAGTTATGACTTGATTTAGTTAGG TAAGCTGATTTATGTTGGAT
CDS sequence (LotjaGi4g1v0321700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGATGGCCGGAACCTCATCCCTCTGCACGTGGCTCGTCGCCGCTTGCATGTCAGTCACGTGCGACGCTGACCGTCC CAGAACCTCGCACGCCATGTTCCGCTCCTCCACCAGGTCCCGGAGAACCACCAGAGCCTTCATTTCATCGCTCTACGGAT CCACCACCATTCAGGGTCTCATCACTTCCCTTCAACCCTGCCACAATGCCTTTGGATCCACAACTTCTTCCACTTTTAAT CGCAGGCACAAGCGTCTCAATCGACACCCTCATTCTGGTAAAACGATGGCCGTAGCTTTGGAACCTGCCCAAGAAATCAC AACTCTGAAAAAGCCTCCTACAAAACAAAGGCGAGTAGTTGTGACAGGCTTGGGCGTGGTTACACCACTTGGTCATGATC CAGATGTCTTCTACAATAATTTACTCGATGGTGTTAGTGGCATAAGTGAGATCGAGACTTTTGATTGTGCAGAATTTCCG ACAAGGATAGCTGGAGAAATTAAGTCTTTCTCAGCGGATGGCTGGGTAGCACCAAAACTTTCAAAGAGAATGGATAAATT TATGCTTTACATGCTTATAGCTGGTAAAAAGGCCTTGGCTGATGGTGGGTTTACTGAAGATATAATGAATGAGTTAGATA AACGCAAGTGTGGAGTTTTGATTGGCTCAGCAATGGGTGGCATGAAGGTTTTCAATGATGCTGTGGAAGCTTTACGAATA TCATATAAGAAGATGAATCCTTTTTGTGTACCTTTTGCCACAACAAATATGGGTTCTGCCATGCTTGCAATGGATCTGGG ATGGATGGGCCCTAATTATTCTATCTCTACAGCTTGTGCTACAAGTAACTTTTGTATACTGAATGCAGCAAACCATATCA TTAGAGGTGAAGCCGATGTGATGCTTTGTGGTGGCTCAGATGCTACTATTATACCAATTGGTTTGGGAGGCTTTGTGGCA TGCAGGGCACTCTCACAGAGAAATACCGATCCTTCCAAAGCTTCCCGCCCTTGGGATATAAATCGTGATGGATTTGTCAT GGGGGAAGGGGCTGGAGTTTTGCTTTTAGAAGAATTGGAGCATGCTAAGAAAAGAGGTGCAGTCATATACGCCGAATTCC TTGGTGGGAGTTTTACCTCTGATGCATATCATGTAACTGAACCACGTCCTGATGGGGCTGGTGTAATACTTTGCATTGAG AAGGCATTAGCTCAGTCTGGAGTATCAAGAGAGGATGTGAATTACATAAATGCACACGCCACATCCACACCAGCTGGAGA TCTTAAAGAGTACCAGGCTCTTATTCACTGTTTTGGTAAAAACCCCGAGCTAAAAGTGAATTCCACGAAATCTATGATTG GTCATCTACTAGGAGCAGCTGGTGGTGTAGAAGCTGTAGCAACAATTCAGGCAATCAGAAGTGGGTGGGTTCATCCGAAT ATCAACCTAGAAAACCCAGATAAAGGAGTGGATGCTGCAGTGCTTGTTGGCCCAAAGAAAGAGAGGCTGGATATCAAGGC AGCCTTATCTAATTCATTTGGTTTTGGGGGTCACAATTCCTCAATCATATTTGCCCCATATAAGTGA
Protein sequence (LotjaGi4g1v0321700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSMAGTSSLCTWLVAACMSVTCDADRPRTSHAMFRSSTRSRRTTRAFISSLYGSTTIQGLITSLQPCHNAFGSTTSSTFN RRHKRLNRHPHSGKTMAVALEPAQEITTLKKPPTKQRRVVVTGLGVVTPLGHDPDVFYNNLLDGVSGISEIETFDCAEFP TRIAGEIKSFSADGWVAPKLSKRMDKFMLYMLIAGKKALADGGFTEDIMNELDKRKCGVLIGSAMGGMKVFNDAVEALRI SYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTACATSNFCILNAANHIIRGEADVMLCGGSDATIIPIGLGGFVA CRALSQRNTDPSKASRPWDINRDGFVMGEGAGVLLLEELEHAKKRGAVIYAEFLGGSFTSDAYHVTEPRPDGAGVILCIE KALAQSGVSREDVNYINAHATSTPAGDLKEYQALIHCFGKNPELKVNSTKSMIGHLLGAAGGVEAVATIQAIRSGWVHPN INLENPDKGVDAAVLVGPKKERLDIKAALSNSFGFGGHNSSIIFAPYK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 3 | 3 | - | – | |
| SignalP_EUK | 1 | 24 | 24 | - | – | |
| Phobius | 4 | 15 | 12 | - | – | |
| Phobius | 16 | 24 | 9 | - | – | |
| Phobius | 25 | 528 | 504 | - | – | |
| PANTHER | 75 | 528 | 454 | 3.2E-278 | ||
| PANTHER | 75 | 528 | 454 | 3.2E-278 | – | |
| Gene3D | 104 | 370 | 267 | 1.9E-79 | ||
| SUPERFAMILY | 117 | 367 | 251 | 7.21E-69 | ||
| Pfam | 117 | 362 | 246 | 2.0E-58 | ||
| TIGRFAM | 117 | 524 | 408 | 4.8E-155 | ||
| SMART | 119 | 527 | 409 | 1.1E-14 | ||
| CDD | 129 | 524 | 396 | 0.0 | – | |
| ProSitePatterns | 270 | 286 | 17 | - | ||
| SUPERFAMILY | 330 | 526 | 197 | 2.88E-63 | ||
| Pfam | 370 | 483 | 114 | 2.5E-33 | ||
| Gene3D | 377 | 528 | 152 | 4.3E-45 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Biological process | Fatty acid biosynthetic process | The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes. | ||
| Molecular function | Transferase activity, transferring acyl groups other than amino-acyl groups | Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor). |
Expression pattern of LotjaGi4g1v0321700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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