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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0321700 |
| Transcript ID | LotjaGi4g1v0321700.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 3-oxoacyl-[acyl]-carrier-protein] synthase; TAIR: AT1G74960.1 fatty acid biosynthesis 1; Swiss-Prot: sp|Q9C9P4|KASC2_ARATH 3-oxoacyl-[acyl]-carrier-protein] synthase II, chloroplastic; TrEMBL-Plants: tr|V7CCC5|V7CCC5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0321700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:69977443..69983180) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCGATGGCCGGAACCTCATCCCTCTGCACGTGGCTCGTCGCCGCTTGCATGTCAGTCACGTGCGACGCTGACCGTCC CAGAACCTCGCACGCCATGTTCCGCTCCTCCACCAGGTCCCGGAGAACCACCAGAGCCTTCATTTCATCGCTCTACGGAT CCACCACCATTCAGGGTCTCATCACTTCCCTTCAACCCTGCCACAATGCCTTTGGATCCACAACTTCTTCCACTTTTAAT CGCAGGCACAAGCGTCTCAATCGACACCCTCATTCTGGTAATCTTCAATTTCCTTACAAGTTTAGCTTTTTCAGATTGTG GATTGTGTTCTTTATAATGGGTATTTCTTCATTTTTTCCATTCTACACTTGATCGTCACATCTGGGATTTTCATGATTTT CGTTTGGATGCGTTTTTTTTTTATTGAACTGTTCATCAAAACCTCGTGGTTTTGGTTGGGATCTTTGTCTTTGGTTGGTT TGTTTTGTTTTTGTATTATGTGGATTTCTGGTTTAATTCCAATGTTTGTTTCACCTGCTTCATTGTGTTAAGGAAACTAA CGTGGTTAGTACTGGGTCGGTACAACACACTTGTCACTCAACTCTACAATTTGCCTTTCTCGTATATATCGAATAGAAAA AAATCTATTCTAATTTTTTTATAGATTAATTGTTTTTTATTCATCTTATGGTCATCACTGCTGTATTCTTGCAATTTCAT GGAGGTTGTTTTCATCACATGTTGAGAAAGTTACTTTAAGCAAGATAAAGCCCTTGTGAGTTTTCCTTTTTACACTCAAT TAAGAGTTCCAATGAAGTGTTCCTGAAGCTAATGTTGAAAATATCGCCACATGATGGCCAACTCTGTCTCTGGTTGGAGG ATGAATTTTTTTACTATGATTTGGTTCCTAGTTCTTCAGTTTTTTTCAACTTTCTGCACATGTCTGTACTCTGTGGTACT AGGATGCTTTTCTCATCCATGTAGCTGCTTGGTAGGGTCTGGTCCAGGAATCTATCTTTTTTTATTCTAAACAATGGATG GATAGTTAAGACTCTGCTTCAATTTGACAAGGCTTCAATTTCATAGCATTTTTGTTGTTTAAGGTTTTCTGTAACCTGGT TGCTTAAACCTCAGCATATTTATTCTTCGTCAGTAGTTGTCTTCATTGACCAATGTTAATGTGTACCTCCTTGAAAATTG AAGAATATGCTTGCATTACTTAGTTTTAAGCGTTTGACTTTTTCTTTAATGCAATGGTTTTGGCATTACATTTTTTGAAT GATAGGCCTCCTAAGTTGTGCTGATGTAGAAGGATGCCAATTTATAGACATGACTTTTATGTCCCACTATTCATATTTCA TGTTCCAATTGCTCAGTGCTGACCTATGGCTTGGAATTGTAAACTTTCAAGGTAAAACGATGGCCGTAGCTTTGGAACCT GCCCAAGAAATCACAACTCTGAAAAAGCCTCCTACAAAACAAAGGCGAGTAGTTGTGACAGGCTTGGGCGTGGTTACACC ACTTGGTCATGATCCAGATGTCTTCTACAATAATTTACTCGATGGTGTTAGTGGCATAAGTGAGATCGAGACTTTTGATT GTGCAGAATTTCCGACAGTAAGTTATTTGAACTAAATTTTTTTCAGTTGTTTCCTGCTGCAGACATTGTTCTGAATACTC TTTTATTTTTTTCTCTCTAGAGGATAGCTGGAGAAATTAAGTCTTTCTCAGCGGATGGCTGGGTAGCACCAAAACTTTCA AAGAGAATGGATAAATTTATGCTTTACATGCTTATAGCTGGTAAAAAGGCCTTGGCTGATGGTGGGTTTACTGAAGATAT AATGAATGAGTTAGATAAACGCAAGTGTGGAGTTTTGATTGGCTCAGCAATGGGTGGCATGAAGGTGACCGACATTTACT CTTCCGCATGTTGAGATTCAAAAGTTGAAGAAAAATTAGGACTTTTGTTGTTTTCAGTAGTTCAATTTTATATCTAATAG CATCATGAGATTGTGAGTAAGTTGTAACACCTGTTGGTATTGTGGATTAAATTTACTGTTGAATGCAAATCAAAATGGAG CCAGGACTATATTATACGTTGCAATGTTATGGCATTGATTGGTTGACCATTTTGTTATTATTCTGTGTCTGAACAGGTTT TCAATGATGCTGTGGAAGCTTTACGAATATCATATAAGAAGATGAATCCTTTTTGTGTACCTTTTGCCACAACAAATATG GGTTCTGCCATGCTTGCAATGGATCTGGTTAGTTTAAATAGATTTTAGCGCTTACTATAGACCATAATTAGGTGTCTTAG TTTTACTCATAAGCTTCTTTATTTTTCCTGGTGATGTTTGATTAATGATTCTTTTATGGATTGCAGGGATGGATGGGCCC TAATTATTCTATCTCTACAGCTTGTGCTACAAGTAACTTTTGTATACTGAATGCAGCAAACCATATCATTAGAGGTGAAG CCGTAAGTATTTTACTTTGATACTTGCTCTTAGGATCCCGGATTTCTTCCCCAAACAATGAGATTTTCATTTTATCCAAA GGTGCTAACAAATTTAATAATTGTGGAATATTTCTGCAGGATGTGATGCTTTGTGGTGGCTCAGATGCTACTATTATACC AATTGGTATTCTTTTGTTACTCATTTTATGGCTTGTATGGAGTCATCATGCCATGAACCTGACATGTATCCTACAATCAT TGATGCAGGTTTGGGAGGCTTTGTGGCATGCAGGGCACTCTCACAGAGAAATACCGATCCTTCCAAAGCTTCCCGCCCTT GGGATATAGTAAGACTATTACATTCTTGGTGCTTTTTACCCCTACTTAAATTGGATGGGTATGCCTTGTCTTTTGTAATA ATTTACAACGGTTACCTTACATAAACCTTTGTGAAACTTAGAAGGTTCATCAAGCAAACTTTGTTTGTTAAATTAAGCAC ATTGTAATTTATGGGAGTCACTACTTCAGATATGTGATAAGATTCCGAAGCTCTTCTTCAGTGATAAGATCTGTAGGACT TTTTTGTGTTTATTTTAGTGGTTATCTTTTTTGTTTTAGAATTCTTTATTCTCCTTATTTTTGTGCTGTCTTCTTATTCT ATTTCTAATACTGCTTGTTTTATATAATAAAAATTAAATCCAGAAACACCAAAAGTTACATATTATTTGTGAACACCTAG GATACAAAGACACCAACTGCCAAAGTTTAAAAAGCAATACAGCAATATGAATCTGTGAAGTCATGCAGATCTAATAGAAC AAAAGACAACTAGAAATTATGTTCAATTTCCTGAGCTGACATATAGTTTCAGTTTTGAAAAACACTAATTAAACTTGAAT TTATTTTAAAAAAGTAATCGGTACATGAATTGCTATGTCACAGAAACTAAATGCTTGCAGTTTTGGTCTTTATATCCATT CTATTCTACACCTTGTCCTGATCTTGTGTTACTAACCATCAGCTAATTGTTATGATATTACAGAATCGTGATGGATTTGT CATGGGGGAAGGGGCTGGAGTTTTGCTTTTAGAAGAATTGGAGCATGCTAAGGTATTTCTAATTTGATTTAATAATTGGT ACCTTGTGTTAGGATTTACCTAATTCTTCAGTTCCCTCCAACAGTATTTAGAGCGCTTGATGCATCTGTTGTATCTTGTT TTAGGATTGTTCTTCATACTTGTCATCACTTCACTGCCTATTATTTTTCATTTTACTGCAGTCTTGATTTGACATTATAT CATCCCTAAATTAAGTAAATATATCCCTTTTGGCTATAATTTGTTAAACTATCCAATTTTTTACCTTGCAGAAAAGAGGT GCAGTCATATACGCCGAATTCCTTGGTGGGAGTTTTACCTCTGATGCATATCATGTAACTGAACCACGTCCTGATGGTAA ATATTAAATCTTCAAGGTCCTTTAATTTATATAATTTTAAAAGCACAAATCATCTATAAATGTACTGATCACCTTCGTAT AAACATCTTGATGAACATGGTCTGGGTTTAAAAGTACTTCTACAGTTCTACCCTTTAGGATCTCAAGAGAGAACAGTGAA ATAAGACAAGCGTATGATATTTTCTTCTTGGTTCTTATTATATTGCTTACTTGGTGGAGTAATTTCATGACAATAATAGT ATAGAAGCTTAAAGTTGCATATCTTTAGTCTAACTTTTGTTTACTCATGCTATGTTTCAACACTTCTGTTCATATGGATG CCTATGCTTCTATTTGTGTAGCATTTGTCAGTTTGAGTTCATAAAAATTAGGCTTTTGTGATGAAGCTGTTGCACTGTCT GGAAATGCAAGTGCATCTTCTATATTTGTCAAATCATTTAAGGCATATTATAAAAGAAAAGAAGCGCTTGTATATCTTTC TGGTCACTTATAAATTATAATGCGAATGTGGAGCTTCTGCATTCAGACTTGTTTTATGTCACATGTTTCTTTCTGTTAGT AGTTATTACAAATTCTGTGTGTGATTGAGACGTTCAAAAATCATCCTTTGTGATCTTAAAAACTTTGGAATGTATTACAC TTTCATCATGACAATTTTAGAGCTATGATTCATTCACACTTGCACTTCATTTCCACCTTCAATCTATATATCTATCTCTC TCTTCTCTTTCAATCATATAATCAATCAAATCTCTTACTCTATCTCTTACTCTCTGCACTTCATTTCCACTCCATTTACA CTTTTTGGGGAGTGTGAATGAAACTTTATTGACAATTTTAGTAGACTAAAAGTGATTGACTACTTGGTGAGAAATGACAT TCTTGGAGATCAGTGACTCCAGACTCAGGCTGGAACTTATGTTTCTTTATCCCATCCTCAAACAGGGGCTGGTGTAATAC TTTGCATTGAGAAGGCATTAGCTCAGTCTGGAGTATCAAGAGAGGATGTGAATTACATAAATGCACACGCCACATCCACA CCAGCTGGAGATCTTAAAGAGTACCAGGCTCTTATTCACTGTTTTGGTAAAAACCCCGAGGTAAATTTCCCTTTTCATGT TCTTATATGACTTGCTAGCCAATTCAAAGATAATTGATTTGGTGCTCTCTTTAATTGTTTTGATTTGCACTGTTACTTAT ACTGCCATGCTTAGCAAAAGATGTCTTAATGTACAGCTAAAAGTGAATTCCACGAAATCTATGATTGGTCATCTACTAGG AGCAGCTGGTGGTGTAGAAGCTGTAGCAACAATTCAGGTAAAAAAACAAATGAATCACTTTTTTATGAAATGTGAACAGT TGGTTTCATTTTTACAATGAAACATATCTGATAGCATGTTTTGATCAACTTTCCTTTTATCAGAATCAATTCTTAAACCC AGTTACTGACATAAGCTACTCCCCAAATTGATTCTGGCTCTAGAATCAGTTATAGAGGAATTTTCAAACATGCACTGATC TATGTTTTTCCATTATGTAGGCAATCAGAAGTGGGTGGGTTCATCCGAATATCAACCTAGAAAACCCAGATAAAGGAGTG GTATGTTTACCTGTTGCAACATCCATCCTTTGTTTAAAATTGTGCATTTACCGGGTTTACAGTTATCTAATTTGGTTGTC TAATAAACATATTTAAACCAGGATGCTGCAGTGCTTGTTGGCCCAAAGAAAGAGAGGCTGGATATCAAGGCAGCCTTATC TAATTCATTTGGTTTTGGGGGTCACAATTCCTCAATCATATTTGCCCCATATAAGTGA
CDS sequence (LotjaGi4g1v0321700.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCGATGGCCGGAACCTCATCCCTCTGCACGTGGCTCGTCGCCGCTTGCATGTCAGTCACGTGCGACGCTGACCGTCC CAGAACCTCGCACGCCATGTTCCGCTCCTCCACCAGGTCCCGGAGTGCTGACCTATGGCTTGGAATTGTAAACTTTCAAG GTAAAACGATGGCCGTAGCTTTGGAACCTGCCCAAGAAATCACAACTCTGAAAAAGCCTCCTACAAAACAAAGGCGAGTA GTTGTGACAGGCTTGGGCGTGGTTACACCACTTGGTCATGATCCAGATGTCTTCTACAATAATTTACTCGATGGTGTTAG TGGCATAAGTGAGATCGAGACTTTTGATTGTGCAGAATTTCCGACAAGGATAGCTGGAGAAATTAAGTCTTTCTCAGCGG ATGGCTGGGTAGCACCAAAACTTTCAAAGAGAATGGATAAATTTATGCTTTACATGCTTATAGCTGGTAAAAAGGCCTTG GCTGATGGTGGGTTTACTGAAGATATAATGAATGAGTTAGATAAACGCAAGTGTGGAGTTTTGATTGGCTCAGCAATGGG TGGCATGAAGGTTTTCAATGATGCTGTGGAAGCTTTACGAATATCATATAAGAAGATGAATCCTTTTTGTGTACCTTTTG CCACAACAAATATGGGTTCTGCCATGCTTGCAATGGATCTGGGATGGATGGGCCCTAATTATTCTATCTCTACAGCTTGT GCTACAAGTAACTTTTGTATACTGAATGCAGCAAACCATATCATTAGAGGTGAAGCCGATGTGATGCTTTGTGGTGGCTC AGATGCTACTATTATACCAATTGGTTTGGGAGGCTTTGTGGCATGCAGGGCACTCTCACAGAGAAATACCGATCCTTCCA AAGCTTCCCGCCCTTGGGATATAAATCGTGATGGATTTGTCATGGGGGAAGGGGCTGGAGTTTTGCTTTTAGAAGAATTG GAGCATGCTAAGAAAAGAGGTGCAGTCATATACGCCGAATTCCTTGGTGGGAGTTTTACCTCTGATGCATATCATGTAAC TGAACCACGTCCTGATGGGGCTGGTGTAATACTTTGCATTGAGAAGGCATTAGCTCAGTCTGGAGTATCAAGAGAGGATG TGAATTACATAAATGCACACGCCACATCCACACCAGCTGGAGATCTTAAAGAGTACCAGGCTCTTATTCACTGTTTTGGT AAAAACCCCGAGCTAAAAGTGAATTCCACGAAATCTATGATTGGTCATCTACTAGGAGCAGCTGGTGGTGTAGAAGCTGT AGCAACAATTCAGGCAATCAGAAGTGGGTGGGTTCATCCGAATATCAACCTAGAAAACCCAGATAAAGGAGTGGATGCTG CAGTGCTTGTTGGCCCAAAGAAAGAGAGGCTGGATATCAAGGCAGCCTTATCTAATTCATTTGGTTTTGGGGGTCACAAT TCCTCAATCATATTTGCCCCATATAAGTGA
Protein sequence (LotjaGi4g1v0321700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSMAGTSSLCTWLVAACMSVTCDADRPRTSHAMFRSSTRSRSADLWLGIVNFQGKTMAVALEPAQEITTLKKPPTKQRRV VVTGLGVVTPLGHDPDVFYNNLLDGVSGISEIETFDCAEFPTRIAGEIKSFSADGWVAPKLSKRMDKFMLYMLIAGKKAL ADGGFTEDIMNELDKRKCGVLIGSAMGGMKVFNDAVEALRISYKKMNPFCVPFATTNMGSAMLAMDLGWMGPNYSISTAC ATSNFCILNAANHIIRGEADVMLCGGSDATIIPIGLGGFVACRALSQRNTDPSKASRPWDINRDGFVMGEGAGVLLLEEL EHAKKRGAVIYAEFLGGSFTSDAYHVTEPRPDGAGVILCIEKALAQSGVSREDVNYINAHATSTPAGDLKEYQALIHCFG KNPELKVNSTKSMIGHLLGAAGGVEAVATIQAIRSGWVHPNINLENPDKGVDAAVLVGPKKERLDIKAALSNSFGFGGHN SSIIFAPYK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 3 | 3 | - | – | |
| Phobius | 1 | 24 | 24 | - | – | |
| SignalP_EUK | 1 | 24 | 24 | - | – | |
| Phobius | 4 | 15 | 12 | - | – | |
| Phobius | 16 | 24 | 9 | - | – | |
| Phobius | 25 | 489 | 465 | - | – | |
| PANTHER | 45 | 489 | 445 | 9.9E-277 | ||
| PANTHER | 45 | 489 | 445 | 9.9E-277 | – | |
| Gene3D | 65 | 331 | 267 | 1.6E-79 | ||
| Pfam | 78 | 323 | 246 | 1.6E-58 | ||
| SUPERFAMILY | 78 | 328 | 251 | 5.76E-69 | ||
| TIGRFAM | 78 | 485 | 408 | 3.7E-155 | ||
| SMART | 80 | 488 | 409 | 1.1E-14 | ||
| CDD | 90 | 485 | 396 | 0.0 | – | |
| ProSitePatterns | 231 | 247 | 17 | - | ||
| SUPERFAMILY | 291 | 487 | 197 | 2.52E-63 | ||
| Pfam | 331 | 444 | 114 | 2.2E-33 | ||
| Gene3D | 338 | 489 | 152 | 3.7E-45 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Biological process | Fatty acid biosynthetic process | The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes. | ||
| Molecular function | Transferase activity, transferring acyl groups other than amino-acyl groups | Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor). |
Expression pattern of LotjaGi4g1v0321700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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