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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0330900 |
| Transcript ID | LotjaGi4g1v0330900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | PsbB mRNA maturation factor; TAIR: AT3G17040.1 high chlorophyll fluorescent 107; Swiss-Prot: sp|Q8RWG2|CF107_ARATH Protein high chlorophyll fluorescent 107; TrEMBL-Plants: tr|G7JNW2|G7JNW2_MEDTR PsbB mRNA maturation factor Mbb1; Found in the gene: LotjaGi4g1v0330900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:71006285..71011348) extracted from Lotus japonicus Gifu genome v1.2.
CTACTCATGATATATGTGATGTCTAAAGCTTAGTAATTAGGCATCTATTAGATTGTTACAAAAAAAATTAGCTAAAAAAT GGAGGTTATAACAGTAATTTTATTACAATCTCTTCTTCTTTCCACTTGGTCTGTACGTAAAACAGGAAACAGTTGAGTCC GTTAACCAGAAATGAAGGTGCTCTCACAGCTTCCTCCTCCATCTTCTTCACACAACTTCACTCTCTTCACTCAAACCAAC AACTTCAAATTCACACTCAAAGTACCCATTTTACCCCTCCACTCCTCCTCCTCCCATCTCACCGCACCGGCACCATGTTG CTCTCTCCGCGACTCATCAACCACCACCACCACCGTGCTGGACAAAAATACCCGTCCCTCCGAACAGACTTCCCGCAATG ACGCTCCGCCGAAAGACTCTAACGGCGCGCTCGTGGTTCGCCGGCCGGTGATGGAGATCTCCGGCGAGGTGAAGGAGGCA GATGAAGATGAGGATGACACGAAGGGTTCTTCGATTGACGCCGGGCTAACCAGATTCGCGAAGAAGATGCCGTTGTTTGA ACCTAAGAGGGTCGAATCGGAGCCTAAAGAGAAACCCCTCACTGTGAATTTGGACTTGGCGTTGTATAAGGCTAAGGTTT TGGGTAGAAAGTTTCGGTATGAAGAAGCAGAGCAAATTCTTCAGAAGGTGTGTGTGGTGTTTGATCAATTTGGTTATTGT TTGTTGTTTGAAGTTTATTTGATTTGTGTTTCTGATTATGGTTTTTGTTGTTTGTGTTTTGAATGGATTGGGAATGGAAG TGTATATGCTGTTGGCCAGAAGATGGTAGAGCTTATGTGGCACTTGGGAAGATTTTGAGCAAGCAATCCAAAACAAGTCA AGCCAGAGAGGTATATGAACAGGGTTGCCAAGCTACTCAGGGTGAAAATGCTTACATTTGGCAGGTTAGTGTTCAATTTT GCTCTTGCATGTGATAACAGAGGAGTGTGTTAAAGTCTGTAAGTTCAGAACTATAGAGTATAGGCAAGTTTTGTAGTGCA TGCAAGTTGCAATTCTAGTATAATAATTCACATTGCATGTAAATGGAATAGGATCTGGATGTAGGTAATTTTCTTATTTA GCAATAGTTCTTACTTAGTTACACCATCATGATGAGCATGAAGCTGTGAAGATAAGCCATGAGTAGGTTCTGGTCATTCC ATCCATGGTGAATCATTTCCAGGATATCCATTTTCTCATATCTGACTGTGATTTATCTTGACTGCCCGCTGCTAAGAACA TCTTTGATGTGGGCAAGACAGCTGTATTTCCAAAAACTCTTTTCAAATTTCACTTTAGACAATGACTCTTTGTCAATGAG TCAGTTGTTACCGCTGATCTTATCTATACTTTAAGGACCTATTAAGCATTTTAATCAGGTGATAATAAACGCTGGATCAT AGGCGTTCATCTTCATGTATTAAAACTGGATAGCTGTTAGGTCTCATCCATGAGTTCCCCCCCCCCCCCCGATCTAATTT GAAATCACTGTTTAGCTTAGACATGACTATAATTTACATGGCCTGGCATGCCTTTGAAGCTTGTACTAGCTAGACCTGGC ATGGAGAATGTTTCATCTGCCAACATCAGGAGTTGGAGTGATTGCTTTCAATGCTTTAATATATTGTCTTTTGACGTACA TTCTGCTGAAGTTAACAACTGAAATTTATCTTTGAACAGTGCTGGGCAGTTCTTGAAAAGAAAATGGGAAATATCAGGAA AGCAAGAGAGCTTTTTGATGCTGCCACGGTAGCTGATAAGAGGCATGTTGCAGCTTGGCACGGATGGGCAGTTCTAGAGT TGAAACAGGGAAATATAACGAAGGCTAGGAATCTGCTTTCCAAAGGTCTTAAGTATTGTGGACAGAATGAGTACATATAC CAAACTCTTGCTTTGCTTGAAGTTAGAGCAAATAGATTTCAGCAGGCTCGATACTTATTTAATCAGGCCACTAAGTGTAA TCCTAACAGCTGTGCTAGTTGGCTTGTAAGTCATGGTCATCTAAGGCATATTGTTTCTGAATTGATCTTATATATTATAC ATATTATCTTATTAATTCGTATTGATTCTTTTTGAAATAGGCTTGGGCACAAATGGAAGTGGGACAGGAAAACTATCGTA CTGCTAGGAAATTATTTGAGGTGATACCTAATATTGCCAATTCTTTCATATTTTCTCTCTGATTCCCTTCCTTGTTAGAA CTTAGCAGACTAAATTTCGTTAGGAGTTAGGGTGTTTTTCCTTGCCCTTTACTTTTATTAATTTATCTCAATGCATGGCT TATGCTTCCTTTTATTCTTTGTGATTAATAGAGAGCAGTGCAAGCAAGTCCTAAAAATAGGTTTGCTTGGCATGTATGGG GCATTTTTGAAGCTAATGTGGGCAACATTATTAAGGGAAGAAAACTTCTAAAGATTGGCCATGCGCTGAATCCAAGAGAT CCCGTTCTCCTCCAGTCTCTTGCATTACTGGAATACAATCACTCGAGTGCAAACCTTGCTCGGATTTTGTTCAGGAGAGC TTCTGAATTAGACCCGAAACATCAACCTGTTTGGTTTGTAAGAAGTCTTCTCACTTGGATATCTTTCTCAAACATCAATA TCCAAATTTCTATTCCTTTTCATATATATATATATATATATTATATATATATATATATATCTTTTTCGAAGTAATCTTGA CATGGTGAATGGTTTGTGTCTTTGTGCATCTACTTCACACCATTCAATTTGTGGTTCTGACCTCGAGGATGTACTTTTTA GAAAAAGGAACAGAATTTAGCATTTCTATTTGATTTTTATGTATGAGATATACTTATGATTTTTCTCTAGTGGGCGGGGA CAAGTTGCAAGCACCTCTATGTATCTTTTATATCTTTTGGTAATCAAATCCTATTCAATGTTTTTAGTAACTCTTGAAGA TGATGGGGTGAAGATAAGAACTCTGCAAGTTCTATGAAGGGCTATTTGAAATTTTTACTCTTATTGCTATTTTGAAATTT TCACTCTTGTTACTATTTTTTCGTGTAACTCTTAACACAGTATTATCTCTGTACATTATCTTGTACTCCTTTCTTTATAA TAATTCATTTTGTTGGTCTTTCAAAAAAAATTATGATGTTACGCTAATTGAGCATGCAAGATAATCTTTCCTTTACCTTT TAAAGCACCATGTTCTTTTTATTGTTGCATATTTTGGACTCGCATAACTTTATGGTTAAAAGAGAATGACTAATCATAAC TTTTGGGATATGCAGGCTTGGGGTTGGATGGAATGGAAAGAAGGAAACTTGAATACAGCTAGAGAACTATACCAGAAAGC CTTATCGATTAATTCAAACAGTGAAAGTGCTGCCAGGTGTCTCCAGGTAACATGTTTGCATATGATAAATATTGTGACAC TTTGATCCTTTACATAGCTAAGTATTCATTTTTTATAACAACTTTCTCCAACGCAGGCATGGGGTGTTCTGGAGCAGAGG GTTGGCAATCTTTCAGCTGCTCGTAGATTATTTAGATCCTCGTTGAATATAAATTCTCAGAGTTATGTGACATGGATGAC ATGGGCTTCACTGGAGGAAGATCAAGGAAATTCTGTGCGTGCTGAAGAGATTCGTAACCTTTATTTCCAGCAGGTAACTG TTGGTGTTTATCAATTCATAATCATAAGTGATGACTTTAGACGTGTTTGGTTCTCTGGATGACAACATAGATGTTTGGGA ATCATCTCAGATAATTGATTTTACTCCAAAATCAATTCTAGTAGAATTTGTGTTTTCATAAATTCATACAAACATAAATC ACTTCACTTTCAATCACTTTTACCAAAATTACTTTTATCCAAAATTAATTGTGATGACGCTAGGCGCTGCTAATATTTGA AATGTTATTTGTTGCATGCAACAGCGCACGGAGGTTGTGGATGATGCTTCATGGGTTATGGGATTCTTAGATATTCTAGA CCCTGCGATTGACACTTTGAAGAGACTCCTGAAGCTGGACTCAAATGCTTACACCACGCCGCTTGATTCTCTGAGAAATA TTGCCGGAAAAAATCGAAACAAGGCTGATTTTTCTAGTGGCGAGGATGGTGAAAGTGACTTTGACTTGGATGCTTTCATT ATGGACAGATTATCTTTTGATTCGTCCAATCTAGAAGTTCAGTTGGGAACACCAAAAATGCCTTCTGTGAAAAGATATTC GTCTCCAAGAAGGATATGGAAGAAGGATATGGCCATCAAATGATAGAGTTGGCAAAGTGTAATCTCAAAATATAGGTAAT GTTGTTAAGGGTTGGGCCTTGTGCAGTACAAATTGGTGTCTTCTCAAATTAAATTTTAAAGTATGACCATAGCACAGGAG ATGTCTTGCCTTGTGTTGAAAACATAGCACTGCAAGAAAATTTTAATGAAAAAAAAAGTATACTACGAGTTATGATTGAC AGTAGCATGTCTTCAAGGGGAATAACTTGTTCAAAGTGAACTTGTCTTGACAATAATTAAAAAAAATTGTTTTTAAATTA ATCAACCAAGATTCTAATGCATTTAAATTGAATTAACTTTGGAGATACTTGAACTTTAAAGACATTCATTTTAGAATAGT TTATCTTTTCTTTAAGCCTATGCTTGGATTGGTGGAACATAATGGAGCGGAACGGAATATAATGAACTAGGGGTGAACAT GGGCCGGATAAATCCAATGAACCCGTCCAACCCAATCCGATCCAATAGAAAAAATGCGGGTTGGATCGGGTAATCGGGTT GATCAGGTAGATTTTACTACAACCCAATTAAGTTCGGATCGGATTTCGGATTCAGTTCAAATCCATCCAACCCAACCCAG AATCCATACATATAATAATATTTTTTTTTATAATTTTACTCATACTTGGAGTGCTAGTGTCGGAGGGATGACTTTTTGAA ACTTTGAGCTTAAGTATTTGTAGTTATTTGTCATATTTGAACTTAGAGTATTTGTTCGTAGTTGTTTGTTACATGTCTAT ATATATTATTTGGCATGACATTTA
CDS sequence (LotjaGi4g1v0330900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGGTGCTCTCACAGCTTCCTCCTCCATCTTCTTCACACAACTTCACTCTCTTCACTCAAACCAACAACTTCAAATT CACACTCAAAGTACCCATTTTACCCCTCCACTCCTCCTCCTCCCATCTCACCGCACCGGCACCATGTTGCTCTCTCCGCG ACTCATCAACCACCACCACCACCGTGCTGGACAAAAATACCCGTCCCTCCGAACAGACTTCCCGCAATGACGCTCCGCCG AAAGACTCTAACGGCGCGCTCGTGGTTCGCCGGCCGGTGATGGAGATCTCCGGCGAGGTGAAGGAGGCAGATGAAGATGA GGATGACACGAAGGGTTCTTCGATTGACGCCGGGCTAACCAGATTCGCGAAGAAGATGCCGTTGTTTGAACCTAAGAGGG TCGAATCGGAGCCTAAAGAGAAACCCCTCACTGTGAATTTGGACTTGGCGTTGTATAAGGCTAAGGTTTTGGGTAGAAAG TTTCGGTATGAAGAAGCAGAGCAAATTCTTCAGAAGTGTATATGCTGTTGGCCAGAAGATGGTAGAGCTTATGTGGCACT TGGGAAGATTTTGAGCAAGCAATCCAAAACAAGTCAAGCCAGAGAGGTATATGAACAGGGTTGCCAAGCTACTCAGGGTG AAAATGCTTACATTTGGCAGTGCTGGGCAGTTCTTGAAAAGAAAATGGGAAATATCAGGAAAGCAAGAGAGCTTTTTGAT GCTGCCACGGTAGCTGATAAGAGGCATGTTGCAGCTTGGCACGGATGGGCAGTTCTAGAGTTGAAACAGGGAAATATAAC GAAGGCTAGGAATCTGCTTTCCAAAGGTCTTAAGTATTGTGGACAGAATGAGTACATATACCAAACTCTTGCTTTGCTTG AAGTTAGAGCAAATAGATTTCAGCAGGCTCGATACTTATTTAATCAGGCCACTAAGTGTAATCCTAACAGCTGTGCTAGT TGGCTTGCTTGGGCACAAATGGAAGTGGGACAGGAAAACTATCGTACTGCTAGGAAATTATTTGAGAGAGCAGTGCAAGC AAGTCCTAAAAATAGGTTTGCTTGGCATGTATGGGGCATTTTTGAAGCTAATGTGGGCAACATTATTAAGGGAAGAAAAC TTCTAAAGATTGGCCATGCGCTGAATCCAAGAGATCCCGTTCTCCTCCAGTCTCTTGCATTACTGGAATACAATCACTCG AGTGCAAACCTTGCTCGGATTTTGTTCAGGAGAGCTTCTGAATTAGACCCGAAACATCAACCTGTTTGGTTTGCTTGGGG TTGGATGGAATGGAAAGAAGGAAACTTGAATACAGCTAGAGAACTATACCAGAAAGCCTTATCGATTAATTCAAACAGTG AAAGTGCTGCCAGGTGTCTCCAGGCATGGGGTGTTCTGGAGCAGAGGGTTGGCAATCTTTCAGCTGCTCGTAGATTATTT AGATCCTCGTTGAATATAAATTCTCAGAGTTATGTGACATGGATGACATGGGCTTCACTGGAGGAAGATCAAGGAAATTC TGTGCGTGCTGAAGAGATTCGTAACCTTTATTTCCAGCAGCGCACGGAGGTTGTGGATGATGCTTCATGGGTTATGGGAT TCTTAGATATTCTAGACCCTGCGATTGACACTTTGAAGAGACTCCTGAAGCTGGACTCAAATGCTTACACCACGCCGCTT GATTCTCTGAGAAATATTGCCGGAAAAAATCGAAACAAGGCTGATTTTTCTAGTGGCGAGGATGGTGAAAGTGACTTTGA CTTGGATGCTTTCATTATGGACAGATTATCTTTTGATTCGTCCAATCTAGAAGTTCAGTTGGGAACACCAAAAATGCCTT CTGTGAAAAGATATTCGTCTCCAAGAAGGATATGGAAGAAGGATATGGCCATCAAATGA
Protein sequence (LotjaGi4g1v0330900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKVLSQLPPPSSSHNFTLFTQTNNFKFTLKVPILPLHSSSSHLTAPAPCCSLRDSSTTTTTVLDKNTRPSEQTSRNDAPP KDSNGALVVRRPVMEISGEVKEADEDEDDTKGSSIDAGLTRFAKKMPLFEPKRVESEPKEKPLTVNLDLALYKAKVLGRK FRYEEAEQILQKCICCWPEDGRAYVALGKILSKQSKTSQAREVYEQGCQATQGENAYIWQCWAVLEKKMGNIRKARELFD AATVADKRHVAAWHGWAVLELKQGNITKARNLLSKGLKYCGQNEYIYQTLALLEVRANRFQQARYLFNQATKCNPNSCAS WLAWAQMEVGQENYRTARKLFERAVQASPKNRFAWHVWGIFEANVGNIIKGRKLLKIGHALNPRDPVLLQSLALLEYNHS SANLARILFRRASELDPKHQPVWFAWGWMEWKEGNLNTARELYQKALSINSNSESAARCLQAWGVLEQRVGNLSAARRLF RSSLNINSQSYVTWMTWASLEEDQGNSVRAEEIRNLYFQQRTEVVDDASWVMGFLDILDPAIDTLKRLLKLDSNAYTTPL DSLRNIAGKNRNKADFSSGEDGESDFDLDAFIMDRLSFDSSNLEVQLGTPKMPSVKRYSSPRRIWKKDMAIK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 32 | 623 | 592 | 1.9E-261 | – | |
| MobiDBLite | 40 | 80 | 41 | - | – | |
| MobiDBLite | 40 | 91 | 52 | - | – | |
| Gene3D | 139 | 211 | 73 | 2.2E-8 | ||
| ProSiteProfiles | 147 | 490 | 344 | 37.691 | ||
| SMART | 147 | 180 | 34 | 410.0 | ||
| SUPERFAMILY | 161 | 397 | 237 | 1.1E-38 | ||
| ProSiteProfiles | 181 | 214 | 34 | 6.195 | ||
| SMART | 181 | 214 | 34 | 46.0 | ||
| SMART | 195 | 228 | 34 | 49.0 | ||
| Gene3D | 212 | 524 | 313 | 8.4E-48 | ||
| SMART | 216 | 249 | 34 | 21.0 | ||
| ProSiteProfiles | 216 | 249 | 34 | 5.281 | ||
| SMART | 230 | 262 | 33 | 28.0 | ||
| SMART | 250 | 283 | 34 | 13.0 | ||
| SMART | 264 | 296 | 33 | 0.24 | ||
| SMART | 284 | 317 | 34 | 22.0 | ||
| ProSiteProfiles | 284 | 317 | 34 | 8.142 | ||
| Pfam | 290 | 351 | 62 | 0.0031 | – | |
| SMART | 298 | 330 | 33 | 4.2 | ||
| SMART | 318 | 351 | 34 | 16.0 | ||
| ProSiteProfiles | 318 | 351 | 34 | 8.142 | ||
| SMART | 332 | 364 | 33 | 25.0 | ||
| SUPERFAMILY | 349 | 554 | 206 | 3.56E-18 | ||
| SMART | 366 | 398 | 33 | 1300.0 | ||
| SMART | 386 | 419 | 34 | 50.0 | ||
| ProSiteProfiles | 386 | 419 | 34 | 6.372 | ||
| SMART | 400 | 432 | 33 | 48.0 | ||
| SMART | 420 | 453 | 34 | 14.0 | ||
| ProSiteProfiles | 420 | 453 | 34 | 8.319 | ||
| Pfam | 422 | 452 | 31 | 0.084 | ||
| SMART | 434 | 469 | 36 | 79.0 | ||
| SMART | 457 | 490 | 34 | 80.0 | ||
| ProSiteProfiles | 457 | 490 | 34 | 6.136 | ||
| SMART | 471 | 503 | 33 | 8.4 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | RNA processing | Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. |
Expression pattern of LotjaGi4g1v0330900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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