Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0337800 |
| Transcript ID | LotjaGi4g1v0337800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT2G32630.1 Pentatricopeptide repeat (PPR-like) superfamily protein; Swiss-Prot: sp|Q8S8P6|PP180_ARATH Pentatricopeptide repeat-containing protein At2g32630; TrEMBL-Plants: tr|G7I783|G7I783_MEDTR PPR containing plant-like protein; Found in the gene: LotjaGi4g1v0337800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:71823820..71827821) extracted from Lotus japonicus Gifu genome v1.2.
CACGAGCCCAACAACCCAACAGATGAACATGTTGGGAAAAACAACAGCAGACTCTTTCTTTCTCCTTCCTCGGGTTCCAT CACGCAGCAGCAGCAGCAGAGTGTGTTATAGCTGAATGTTAACTGTACCTCCCTTCTCATTCTTCATCTCCATAGAGCAC GATGCATAGCTTCAACCTCACAAGTTCTTCCAATCGATTCAACAAGCAATAGCCACAGAAGAAGGTGCGGTTTTCTCTGT AATATCTCAATCCCTTCCACCTAATTTTCTATTCATTTGTTGGTTTTCTGTGTATAACAATGACTTCCCAGAAGACCCTT TTGAGAATTGTCAACAATGGTGTGTCCTTTCCTTCAAAGCAGAACCAACAACAACAACTTGAACTTGCCCAGAAGATAAC CCACAGCCTCATCAATTCAACTGGTCCCAACTATTTCAAACCCTTGCACTCCATGATCTCCTGCATCACCCCCCATGTTA CTCACCGTGTTCTCTCAGACCCCAATCTCCCACCTCGTTCTTGTTTAGCCTTTTTCAACTTCCTGGGAACCCAACATCCC CATACTGCACTCAAGCCTGACCTTAAGGCCCATGTGATTCTCCTTTCCAGGCTTTTTGATGCCCGAAAATTCGCCGCCAT GAAGAGCATTTTGAATTCTGTTGTTGCTAGTGGGGAGATTCAATGTCCTGTTTCTGGTATTGTTTCATTGGTTGATGAAT GTGAGCCCCATTTTGCTGAGAAGCTGTGTGATATGTTGTTCAGGGTCTGTTCTGATAATAGGTTGTTTGAAGAGGCTTTT AGGGTCTATGATTATGTGGAAGGGAAGGGGTTGGTGATAGAGGAGAGGTCTTGCTTTGTGCTTTTGCTTGCTTTGAAGAA ATGTGGGGAGGTAGACTTGTGTCTTAGGTTTTTCCGCCAGATGGTCGAGTCGGGTAGCATTGAAATCAGGGTTCAGTCTT TGACACTTGTGATTGATGGGTTGTGTAAGAGAGGAGAGATTGGGAAAGCTAAGGAGTTGATGGATGAGATGGCGGGTAAA GGCGTTGTGAAACCAACCGTGTTTACTTACAATACATTGTTAAATGCATATGTTGCAAGAAAGGATCAACGTGGAGTTGA TGAGATACGAAGACTGATGGAGAAGGAGCAAATTGTTCCTAGTTTGGCTACATATAGTATTTTGATACAATGGTATGCGA GTTTAGGTGATATCGGGAAAGCTGAGAAGATATTTGTGGAAATGCATGAGAGAAATATAGAAATGGATGTTTACGTCTAT ACATCAATGATAAGTTGGAATTGTAGGTTAGGAAATATTAAAAGGGCTTCTGCTTTATTTGATGAGATGACTCAGAGAGA CATAGTTCCTAATGCTCATACTTATGGGGCCTTGATTTGTGGGATGTGCAAAGCAGGTCAAATGGAGGCTGCGGAAGTCT TGTTAAAAGAGATGCAAATTAATGGAGTTGACCTAAATTTAGTAATATTTAACACCATGATGGACGGTTATTGCAAAAGA GGAATGATAGATGAAGCTTTGAGACTGCAAGATATCATGGAAAGGAAAGGATTTGAAGCGGATGTATTTACATACAACAT TCTTGCTAGTGGGCTCTGTGATTTGCATAGGTATGAGGAAGCCAAGAGGACATTGAATACAATGATAGAGAAGGGTTTGG CTCCAAATGTTGTGTCTTTCACTATATTTATTGAGATATGTTGTAAAGAAGGAAACCTTGCAGAAGCTGAGAGGTTCTTT AGGGACATGGAGAAGAGGGGAGATGTGCCTAATATTATTACATATAATACTCTAATAGATGCATATAGCAAGAACGAAAA AGTTAAGCAAGCTCGTATGTTAAAATCTGAAATGGTAGCGACGGGATTACAGCCAGATGTATATACATACACATCACTAA TACTAGGGGAATGTATTGTTGGCAGGGTAGATGAGGCATTGAAAGTTTTCGATGAAATGTTGTTAAAGGGCATAACTGGA AATGTTGCGACATATACGGCGATTATTTCAGGTTTATCCAAGGAGGGGAGATCTGATGAAGCATTTAAATTTTATGATGA GATGATGACAATGGGCCTAATACCTGATGATAGAGTTTTCGCCGCACTTGTTGGCAGCCTTCATAAACCCAGCTCTGATG GGGAACAAAAGTAGACACCTTTGATGCCTCAAGCCTGGTCAAATATTGGTCGGTCAAATTCACACATGAAGGCAGCTGCA TACAATGGTGGCTAAGGTTTTGAGATGATGATGATTTTTTCCTTAAAGCTCAAGCAAGAAGACAGTTGTATGGAGAAAAT CCATCTTCTACATTACGAAAGGAGAGCTTGGTAAATGGGATACTTTCCAAATATTCTGGTATGCTGGTATACAAACATTC TCTTTTTCTTTTTTGGACATACCTGAGTTTGGTGATTGGGAACTTTGCTCTAGTTGTTCACACAATTTAATATATATACA TGATTCACAATCTCTAAGATCAGGAAACTAGGAAGCAAGGGACATAATACAAATCAAATCTGACTTATTAACAGAAAATA TGCAGCCCCTAAATAGGAGATACTAACTTTAAGTTACAGACACTTTTCAACAGCTGTGATAAGAGGACCGCTCATTTTCA TATCAACTGTTAAAGTACACAAATGAACCAAGGTCGTGTAGCTTAACCTTAATCTCTTAAATATGAAGCATGACCTTGTT CCGCTGTAGTTCTTATATGAGTGCCAAATATAAACTCTCTTTTTGTGAGGAGGCTTCATGAGAACTAGCAATTGTAAGGG CAAAAGCTCCAAAAGGATTTATGTACAACTGGTAGTCATTCATTTCTTCGGGATTTTGCTAATTAAATTGCTGTCGCCTT GGGTTTTCCCCCTTGATTTTTTTGGATGGCTCATCATACAGGCATTTCCAAAAAGCCTCTTCAAATTTTTAAATTCTGAA TTATCTTTAAACTAGACAAACAATCTAACGCTTACAGCAAATAATCAAGTGATAAATAGTACTCCCAAGACTTAAAGCAC CAATCAATTGAGCATGTGAAAAATCATCTCGAACACTTTATAATCTTTCATTGAGAGTCATTTTGTAGTCTCAGTTGTCA TATATTTGCTAAAAGTAGTCATTTTTTTCTCTGTTTGCATTTGTAAACAATTAACAGATCTGCTCCTGATTTTGCAGAAA GTTAAAGATAGCTGGCGAATTGTTCGCAGAGATATTTATTTCCTGGTACTTGTTGTAAACATTCTTAACCAATCAATCAA GTTGTAGTGCTTGTTCCAAACTGTAAACTTTTTTACCAAAATATCCTTACTTGATATTTCCATATTTTTTTAATCTTACA ATGTATATTGATCTCACAGAAGAAAGGATCGATGACAGAGAACGATAATTCTCATTCTGATTAAGTTGAGTATATTAATT GCTTATATACAAGAGAAAATGGAGAGAAAACTTTAACTGCATATGACTAACAAAACTGGTATGACTGACTGACTAACACT AAATAATTTAGCTATAAATTATTTATGGCAAGAGTTAATCTTGAGATTGTTTTTGATCGAGCTCACTGACGTAGTATAAT CCATATAGCCGACCTCATTTAGTGGGATACGCTTTTGTTGTATTCGTTGTTTGAATGGGGTACTGTGTGTGGGCTCGAGA TAAGTTGTAGAAGGGTGGCTGGGATGAAAGTTAGGAATGATATTACAGGTTGTGGCTTAATCTAAGTTAGAGGCATCTCA ATTTTTTGTTTCTTTTGTCTTGTGGCACTAGCTTGCTACTGCAAAGTTTAGCACTACTTGTGCTATGTTTAATAAAATCT TCTTTGGCCTTTCAAAAAAGATTAGTTTTCCCCTCTAAAGCATGGCACATACCAGGTACGGTTATGCATTGGGTATGTAC CAAAACTTTTTTAAAAACAATACTTACAAATATAAATAATTAAAGAGATACGTGGCCCTGGTATAGGTGGATGCTTCTTG GG
CDS sequence (LotjaGi4g1v0337800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTTCCCAGAAGACCCTTTTGAGAATTGTCAACAATGGTGTGTCCTTTCCTTCAAAGCAGAACCAACAACAACAACT TGAACTTGCCCAGAAGATAACCCACAGCCTCATCAATTCAACTGGTCCCAACTATTTCAAACCCTTGCACTCCATGATCT CCTGCATCACCCCCCATGTTACTCACCGTGTTCTCTCAGACCCCAATCTCCCACCTCGTTCTTGTTTAGCCTTTTTCAAC TTCCTGGGAACCCAACATCCCCATACTGCACTCAAGCCTGACCTTAAGGCCCATGTGATTCTCCTTTCCAGGCTTTTTGA TGCCCGAAAATTCGCCGCCATGAAGAGCATTTTGAATTCTGTTGTTGCTAGTGGGGAGATTCAATGTCCTGTTTCTGGTA TTGTTTCATTGGTTGATGAATGTGAGCCCCATTTTGCTGAGAAGCTGTGTGATATGTTGTTCAGGGTCTGTTCTGATAAT AGGTTGTTTGAAGAGGCTTTTAGGGTCTATGATTATGTGGAAGGGAAGGGGTTGGTGATAGAGGAGAGGTCTTGCTTTGT GCTTTTGCTTGCTTTGAAGAAATGTGGGGAGGTAGACTTGTGTCTTAGGTTTTTCCGCCAGATGGTCGAGTCGGGTAGCA TTGAAATCAGGGTTCAGTCTTTGACACTTGTGATTGATGGGTTGTGTAAGAGAGGAGAGATTGGGAAAGCTAAGGAGTTG ATGGATGAGATGGCGGGTAAAGGCGTTGTGAAACCAACCGTGTTTACTTACAATACATTGTTAAATGCATATGTTGCAAG AAAGGATCAACGTGGAGTTGATGAGATACGAAGACTGATGGAGAAGGAGCAAATTGTTCCTAGTTTGGCTACATATAGTA TTTTGATACAATGGTATGCGAGTTTAGGTGATATCGGGAAAGCTGAGAAGATATTTGTGGAAATGCATGAGAGAAATATA GAAATGGATGTTTACGTCTATACATCAATGATAAGTTGGAATTGTAGGTTAGGAAATATTAAAAGGGCTTCTGCTTTATT TGATGAGATGACTCAGAGAGACATAGTTCCTAATGCTCATACTTATGGGGCCTTGATTTGTGGGATGTGCAAAGCAGGTC AAATGGAGGCTGCGGAAGTCTTGTTAAAAGAGATGCAAATTAATGGAGTTGACCTAAATTTAGTAATATTTAACACCATG ATGGACGGTTATTGCAAAAGAGGAATGATAGATGAAGCTTTGAGACTGCAAGATATCATGGAAAGGAAAGGATTTGAAGC GGATGTATTTACATACAACATTCTTGCTAGTGGGCTCTGTGATTTGCATAGGTATGAGGAAGCCAAGAGGACATTGAATA CAATGATAGAGAAGGGTTTGGCTCCAAATGTTGTGTCTTTCACTATATTTATTGAGATATGTTGTAAAGAAGGAAACCTT GCAGAAGCTGAGAGGTTCTTTAGGGACATGGAGAAGAGGGGAGATGTGCCTAATATTATTACATATAATACTCTAATAGA TGCATATAGCAAGAACGAAAAAGTTAAGCAAGCTCGTATGTTAAAATCTGAAATGGTAGCGACGGGATTACAGCCAGATG TATATACATACACATCACTAATACTAGGGGAATGTATTGTTGGCAGGGTAGATGAGGCATTGAAAGTTTTCGATGAAATG TTGTTAAAGGGCATAACTGGAAATGTTGCGACATATACGGCGATTATTTCAGGTTTATCCAAGGAGGGGAGATCTGATGA AGCATTTAAATTTTATGATGAGATGATGACAATGGGCCTAATACCTGATGATAGAGTTTTCGCCGCACTTGTTGGCAGCC TTCATAAACCCAGCTCTGATGGGGAACAAAAGTAG
Protein sequence (LotjaGi4g1v0337800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTSQKTLLRIVNNGVSFPSKQNQQQQLELAQKITHSLINSTGPNYFKPLHSMISCITPHVTHRVLSDPNLPPRSCLAFFN FLGTQHPHTALKPDLKAHVILLSRLFDARKFAAMKSILNSVVASGEIQCPVSGIVSLVDECEPHFAEKLCDMLFRVCSDN RLFEEAFRVYDYVEGKGLVIEERSCFVLLLALKKCGEVDLCLRFFRQMVESGSIEIRVQSLTLVIDGLCKRGEIGKAKEL MDEMAGKGVVKPTVFTYNTLLNAYVARKDQRGVDEIRRLMEKEQIVPSLATYSILIQWYASLGDIGKAEKIFVEMHERNI EMDVYVYTSMISWNCRLGNIKRASALFDEMTQRDIVPNAHTYGALICGMCKAGQMEAAEVLLKEMQINGVDLNLVIFNTM MDGYCKRGMIDEALRLQDIMERKGFEADVFTYNILASGLCDLHRYEEAKRTLNTMIEKGLAPNVVSFTIFIEICCKEGNL AEAERFFRDMEKRGDVPNIITYNTLIDAYSKNEKVKQARMLKSEMVATGLQPDVYTYTSLILGECIVGRVDEALKVFDEM LLKGITGNVATYTAIISGLSKEGRSDEAFKFYDEMMTMGLIPDDRVFAALVGSLHKPSSDGEQK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 139 | 271 | 133 | 1.1E-20 | ||
| ProSiteProfiles | 146 | 180 | 35 | 7.103 | ||
| PANTHER | 157 | 246 | 90 | 1.2E-148 | – | |
| ProSiteProfiles | 181 | 215 | 35 | 7.552 | ||
| Pfam | 188 | 212 | 25 | 0.31 | ||
| ProSiteProfiles | 217 | 251 | 35 | 9.569 | ||
| TIGRFAM | 222 | 250 | 29 | 1.9E-5 | ||
| Pfam | 240 | 299 | 60 | 4.3E-11 | ||
| PANTHER | 250 | 425 | 176 | 1.2E-148 | – | |
| ProSiteProfiles | 253 | 287 | 35 | 9.131 | ||
| Gene3D | 273 | 387 | 115 | 6.5E-31 | ||
| ProSiteProfiles | 288 | 322 | 35 | 10.271 | ||
| SUPERFAMILY | 291 | 460 | 170 | 4.45E-6 | – | |
| TIGRFAM | 291 | 324 | 34 | 7.1E-8 | ||
| ProSiteProfiles | 323 | 357 | 35 | 11.411 | ||
| Pfam | 323 | 371 | 49 | 1.2E-12 | ||
| TIGRFAM | 325 | 359 | 35 | 1.8E-6 | ||
| PANTHER | 355 | 526 | 172 | 1.2E-148 | – | |
| ProSiteProfiles | 358 | 392 | 35 | 11.224 | ||
| TIGRFAM | 360 | 393 | 34 | 1.3E-7 | ||
| Gene3D | 388 | 454 | 67 | 3.4E-19 | ||
| ProSiteProfiles | 393 | 427 | 35 | 12.803 | ||
| Pfam | 393 | 441 | 49 | 3.0E-16 | ||
| TIGRFAM | 395 | 429 | 35 | 4.1E-9 | ||
| PANTHER | 417 | 618 | 202 | 1.2E-148 | – | |
| ProSiteProfiles | 428 | 462 | 35 | 12.255 | ||
| TIGRFAM | 430 | 464 | 35 | 6.6E-7 | ||
| Gene3D | 455 | 525 | 71 | 5.1E-21 | ||
| Pfam | 458 | 491 | 34 | 1.8E-10 | ||
| ProSiteProfiles | 463 | 497 | 35 | 12.211 | ||
| TIGRFAM | 465 | 498 | 34 | 1.0E-6 | ||
| Pfam | 497 | 544 | 48 | 1.0E-15 | ||
| ProSiteProfiles | 498 | 532 | 35 | 11.882 | ||
| TIGRFAM | 500 | 534 | 35 | 1.1E-7 | ||
| Gene3D | 526 | 601 | 76 | 2.8E-21 | ||
| ProSiteProfiles | 533 | 567 | 35 | 11.389 | ||
| TIGRFAM | 535 | 568 | 34 | 2.8E-5 | ||
| Pfam | 568 | 614 | 47 | 1.1E-10 | ||
| ProSiteProfiles | 568 | 602 | 35 | 13.252 | ||
| TIGRFAM | 571 | 603 | 33 | 5.6E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0337800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…