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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0344400 |
| Transcript ID | LotjaGi4g1v0344400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT4G15720.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q8VYH0|PP313_ARATH Pentatricopeptide repeat-containing protein At4g15720; TrEMBL-Plants: tr|I1KN13|I1KN13_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0344400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:72430307..72432396) extracted from Lotus japonicus Gifu genome v1.2.
GGAAATTAAATAATGTATTATAGTGCAAGTGCAAAGTGCAAGCCGGGACGTTGTAAAAGTAAAATGAATTGGTGTATGGA AATAGAGATAGAACAATACAATACATAAGATGAAGCAGCCGTTGAAACCCAGTTTGGTAATATCACTCTCTTCTTCTTCT TCCTCTCTTTCCCGCCTTCACAATCCCAATGCCCACTACGTTGAAAAGCTCCGAAGTTGCAAGGATTTAACCTCTGCAAC CTCGACCCACTCCAACGTTGTCAAATCCGGTTTGTCGAATGACATCTTTACGACCAACCATCTTATTAACTGCTATGTTA GACTCCTCAGAACCGACCATGCACAGAAACTGTTCGACGAAATGCCCCGCCGTAATGTCGTGTCTTGGACTTCACTTATG GCCGGTTATGTCAGCCAGGGTCAACCCAATATGGCACTTTGTCTCTTCCCTCACATGCAAGGAACCTTGGTTCTGCCGAA CGAATTCACGTTTGCCACCCTCATCAATGCATGTTCTGTCCTTGCAAACCTTGAGATTGGTAGAAGGATTCATGCTCTCG TTGAGGTTTCGGGTTTCAGGTCCAATCTTGTTGTGTGTTCTTCCTTCATTGATATGTATGGGAAATGCAACCGTGTTCAT GAGGCTCGGGTGATTTTCGACTCCATGTGTGTGAGGAATGTTGTTTCTTGGACTTCCATGATCACCACGTATTCTCAGAA TGCACAAGGGCACCGTGCTCTGCAACTCTTGAGGGAATTCAATCATTTGAGGTTGGAAAGACCAAATCATTTCATGTTGA GCAGTACGATTAGTGCTTGCGCGAGTTTGGGCAGCCTAGGTTCGGGGAAGATCACTCATGGGGTGGTCATTCGTCGTGGG CATGATGCAAGTGATGTGATTGCTAGTGCACTTGTGGACATGTATGCTAAATGTGGCTGTGTTGATTATTCTGACAAAGT CTTTAGGAGAATCCTGCATCCTTCAGTGATTCCCTATACTTCAATGATTGTGGGGGCTGCAAAGTATGGACTTGGTGCTT TTTCTCTACAACTATTTGAAGAAATGATTGATAGAAGAATAAAACCCAATGATATCACATTTGTTGGGGTCTTACATGCT TGCAGCCATTCAGGGCTTATAGATAAAGGACTTGAGCTACTTAACTCCATGATTGAGAAACATGGGGTGAGGCCTGATGC AAAGCATTATACATGCATTGCAGATATGCTTGGTCGAGTGGGGCGTGTCGATGAAGCATATAAGTTAGCAAAATCAGTTC AAGTTGAAGGCGAGGGACATTCCTTGTTGTGGGGGACACTTCTGTCAGCTAGCAGGCTTCATGGAAGAGTAGACATTGCC CTTGAAGCTAGCAACCGGCTCATAGGATCCAACCAACAAGTAGCAGGTGCATATGTCACACTGTCCAACACATATGCATT GGCAGGGGACTGGGAAAATGCTCATAATCTAAGATCTGAAATGAAGCGTGCTGGAGTTTGGAAAGAACCTGGCTGCAGTT GGATTGAGATAAAGGAATCAACTTTCTTGTTCCATGCTGGAGACACCTCTAAATGTACTCAAGGGAGGGAGATACTGTGC TTGTTGAGGGAATTAGAAGAGAAAATGAAGGGAAGAGGATATGTGGGAAGAACTACAGGGTTGGTGTTTGTTGATGTGGA AGAGGAAGCTAAAGAAGAAATTTTGAGTTTACACAGTGAGAAACTTGCCTTGGCATTCGGATTAATAAACACGCCTAAAG GAGTAACAATCAGAATAATGAAGAACTTGAGAATGTGCATGGACTGTCATGAATTCTTCAAGCTGATAAGTGATATTGTA GAAAGAGAGTTCATTGTGAGAGATGTGAACAGATTCCATCATTTCAAAAATGGATTATGCACTTGTGGAGATTTCTGGTA ATGATCCATTACAGACACTATTTCATCAGAAAAATGATCAGTAGGAGAATTCAGCCAAGAGGTCACTTTTTTTATTAAAG AAATATATATGAGGTTGGAAACATGAAATTTGAAATTAAGATACTTTTGTCCATTGAACAAAATGAAAATCAAATTAAAG CATTTTGAAC
CDS sequence (LotjaGi4g1v0344400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGCAGCCGTTGAAACCCAGTTTGGTAATATCACTCTCTTCTTCTTCTTCCTCTCTTTCCCGCCTTCACAATCCCAA TGCCCACTACGTTGAAAAGCTCCGAAGTTGCAAGGATTTAACCTCTGCAACCTCGACCCACTCCAACGTTGTCAAATCCG GTTTGTCGAATGACATCTTTACGACCAACCATCTTATTAACTGCTATGTTAGACTCCTCAGAACCGACCATGCACAGAAA CTGTTCGACGAAATGCCCCGCCGTAATGTCGTGTCTTGGACTTCACTTATGGCCGGTTATGTCAGCCAGGGTCAACCCAA TATGGCACTTTGTCTCTTCCCTCACATGCAAGGAACCTTGGTTCTGCCGAACGAATTCACGTTTGCCACCCTCATCAATG CATGTTCTGTCCTTGCAAACCTTGAGATTGGTAGAAGGATTCATGCTCTCGTTGAGGTTTCGGGTTTCAGGTCCAATCTT GTTGTGTGTTCTTCCTTCATTGATATGTATGGGAAATGCAACCGTGTTCATGAGGCTCGGGTGATTTTCGACTCCATGTG TGTGAGGAATGTTGTTTCTTGGACTTCCATGATCACCACGTATTCTCAGAATGCACAAGGGCACCGTGCTCTGCAACTCT TGAGGGAATTCAATCATTTGAGGTTGGAAAGACCAAATCATTTCATGTTGAGCAGTACGATTAGTGCTTGCGCGAGTTTG GGCAGCCTAGGTTCGGGGAAGATCACTCATGGGGTGGTCATTCGTCGTGGGCATGATGCAAGTGATGTGATTGCTAGTGC ACTTGTGGACATGTATGCTAAATGTGGCTGTGTTGATTATTCTGACAAAGTCTTTAGGAGAATCCTGCATCCTTCAGTGA TTCCCTATACTTCAATGATTGTGGGGGCTGCAAAGTATGGACTTGGTGCTTTTTCTCTACAACTATTTGAAGAAATGATT GATAGAAGAATAAAACCCAATGATATCACATTTGTTGGGGTCTTACATGCTTGCAGCCATTCAGGGCTTATAGATAAAGG ACTTGAGCTACTTAACTCCATGATTGAGAAACATGGGGTGAGGCCTGATGCAAAGCATTATACATGCATTGCAGATATGC TTGGTCGAGTGGGGCGTGTCGATGAAGCATATAAGTTAGCAAAATCAGTTCAAGTTGAAGGCGAGGGACATTCCTTGTTG TGGGGGACACTTCTGTCAGCTAGCAGGCTTCATGGAAGAGTAGACATTGCCCTTGAAGCTAGCAACCGGCTCATAGGATC CAACCAACAAGTAGCAGGTGCATATGTCACACTGTCCAACACATATGCATTGGCAGGGGACTGGGAAAATGCTCATAATC TAAGATCTGAAATGAAGCGTGCTGGAGTTTGGAAAGAACCTGGCTGCAGTTGGATTGAGATAAAGGAATCAACTTTCTTG TTCCATGCTGGAGACACCTCTAAATGTACTCAAGGGAGGGAGATACTGTGCTTGTTGAGGGAATTAGAAGAGAAAATGAA GGGAAGAGGATATGTGGGAAGAACTACAGGGTTGGTGTTTGTTGATGTGGAAGAGGAAGCTAAAGAAGAAATTTTGAGTT TACACAGTGAGAAACTTGCCTTGGCATTCGGATTAATAAACACGCCTAAAGGAGTAACAATCAGAATAATGAAGAACTTG AGAATGTGCATGGACTGTCATGAATTCTTCAAGCTGATAAGTGATATTGTAGAAAGAGAGTTCATTGTGAGAGATGTGAA CAGATTCCATCATTTCAAAAATGGATTATGCACTTGTGGAGATTTCTGGTAA
Protein sequence (LotjaGi4g1v0344400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKQPLKPSLVISLSSSSSSLSRLHNPNAHYVEKLRSCKDLTSATSTHSNVVKSGLSNDIFTTNHLINCYVRLLRTDHAQK LFDEMPRRNVVSWTSLMAGYVSQGQPNMALCLFPHMQGTLVLPNEFTFATLINACSVLANLEIGRRIHALVEVSGFRSNL VVCSSFIDMYGKCNRVHEARVIFDSMCVRNVVSWTSMITTYSQNAQGHRALQLLREFNHLRLERPNHFMLSSTISACASL GSLGSGKITHGVVIRRGHDASDVIASALVDMYAKCGCVDYSDKVFRRILHPSVIPYTSMIVGAAKYGLGAFSLQLFEEMI DRRIKPNDITFVGVLHACSHSGLIDKGLELLNSMIEKHGVRPDAKHYTCIADMLGRVGRVDEAYKLAKSVQVEGEGHSLL WGTLLSASRLHGRVDIALEASNRLIGSNQQVAGAYVTLSNTYALAGDWENAHNLRSEMKRAGVWKEPGCSWIEIKESTFL FHAGDTSKCTQGREILCLLRELEEKMKGRGYVGRTTGLVFVDVEEEAKEEILSLHSEKLALAFGLINTPKGVTIRIMKNL RMCMDCHEFFKLISDIVEREFIVRDVNRFHHFKNGLCTCGDFW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 30 | 30 | - | – | |
| Gene3D | 8 | 139 | 132 | 2.0E-22 | ||
| PANTHER | 30 | 148 | 119 | 8.2E-90 | – | |
| ProSiteProfiles | 58 | 92 | 35 | 10.041 | ||
| TIGRFAM | 61 | 90 | 30 | 0.002 | ||
| Pfam | 88 | 135 | 48 | 1.1E-10 | ||
| ProSiteProfiles | 93 | 123 | 31 | 5.81 | ||
| ProSiteProfiles | 124 | 158 | 35 | 7.245 | ||
| Gene3D | 140 | 219 | 80 | 4.0E-7 | ||
| PANTHER | 141 | 246 | 106 | 8.2E-90 | – | |
| ProSiteProfiles | 159 | 193 | 35 | 8.813 | ||
| Pfam | 161 | 190 | 30 | 0.0039 | ||
| TIGRFAM | 161 | 191 | 31 | 1.7E-4 | ||
| Pfam | 192 | 216 | 25 | 0.11 | ||
| Gene3D | 220 | 507 | 288 | 2.0E-33 | ||
| ProSiteProfiles | 226 | 260 | 35 | 5.009 | ||
| PANTHER | 230 | 459 | 230 | 8.2E-90 | – | |
| ProSiteProfiles | 261 | 291 | 31 | 5.788 | ||
| Pfam | 286 | 338 | 53 | 0.0041 | ||
| ProSiteProfiles | 292 | 326 | 35 | 9.109 | ||
| TIGRFAM | 296 | 327 | 32 | 0.0022 | ||
| ProSiteProfiles | 327 | 362 | 36 | 9.142 | ||
| TIGRFAM | 329 | 364 | 36 | 6.5E-5 | ||
| SUPERFAMILY | 342 | 452 | 111 | 6.78E-6 | ||
| ProSiteProfiles | 363 | 397 | 35 | 7.267 | ||
| ProSiteProfiles | 431 | 465 | 35 | 7.498 | ||
| Pfam | 435 | 463 | 29 | 0.12 | ||
| Pfam | 467 | 593 | 127 | 2.2E-34 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi4g1v0344400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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