Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0346700 |
| Transcript ID | LotjaGi4g1v0346700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Vesicle-associated protein 1-2; TAIR: AT1G08820.1 vamp/synaptobrevin-associated protein 27-2; Swiss-Prot: sp|B9DHD7|VAP22_ARATH Vesicle-associated protein 2-2; TrEMBL-Plants: tr|C6THF6|C6THF6_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi4g1v0346700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:72586472..72590050) extracted from Lotus japonicus Gifu genome v1.2.
GTGAATTATTTAAAAAGAAGTGAGAAATGCGCATTATGGTTTGGTACAACCGCTGCGCAGAGGGTGAGTCGGACCCACTC AGACACTCACGTAACCGACACCCAACTATCCCACTCTACAATGTAACAACTCTCTTCTCTTTCTTCTTTCTTCTTTGTTC CTCGCACGAACTCACCAACACACAGATCATCATCACCACATTCTCTCGCTTCAATTAGGGTTCACCATTCCTTCTTCTTC TCTCTCTCTCTCTCTCTTGCATCGTAACTACCCTTCTTCTTCTTCTTCTTCATTCATCTACACTCGCTTACAATGCCACG CTTTCCACTTTGAATTTCTCTCTTCATCTAATCTTCTCTTCACAGAGTACTCATTTTTTGCAGAACAAAAATCACAATCA CCATGACTACAGAGCTTCTTCAAACCGAACCTGCTGAACTCAGATTTGTCTGTAAGTCACAAACATGCTCTTCCTCTATG AGATCTTATGTATGATATCACAATTGACAATGTTGTTGGTTGCTATGATCCTTTTTTCTGCAGTTGAATTGAAGAAACAG AGTTCATGCTTGATTCAACTTGTAAACAAGGTTGACCAGTACATTGCTTTCAAGGTACCACTGCATTTTCCATCATAATC AATTTTGCCATGAATCAATTTTCAATGCTGAAAAAATCCTACTAATCTACTTACTGGCAGGTTAAAACAACTTCACCCAA GAAATATTGTGTCAGACCCAACACTGGCATCATTAGGCCAAACGAAACATGTGATTTTACCGGTATATTTCTCTGTTATG TCCTTATTCAATGCTAAATTGAGTAAATTCATTTTAGATTTTAGTGTCATTGTATTGTATGGATTGTTTGTTGCTCTGTC TTTGTTTTCAGTTTGATTTAGTTAATGAATATGATTGGCTTTATTTATGTTTCTTTGTGGGATGCAGTTACTATGCAAGC TCAGCGCGCGGCGCCGCCTGATATGCAGTGCAAGGACAAATTTCTTATTCAAAGCACAGTTATCCCCTTTGGAGCAACAG AAGATGACATCACATCTGATATGGTGAGGTTATTTAATTTTATCAAATTTTCTTGTTTTTTTTTCCTGGGATGTGACACT GATGGGTTGTTGTATTTAATTTTTTCTTGAATGATTGTATATTCCTTTCTCTTTTGGCAGTTTTCGAAAGATAGTGGGAA GTTTATTGAGGAGAAGAAGCTGAGGGTAGTCCTTATCAGTCCACCATCTTCTCCAGTCTTGCTTCCTGTAAATGGGGATG TGAAGCAGGATCCGTCGTTCGATGAAATTAATTTGCAAAAAGATAGGGTGCCTACTGGTGTTGAAAATATGCCTCCCTCT CTTAAAGTGAGCTCATTTCTTTCCAACATTCCCCCTCAATCTCTCATAAGCTGTTTGAATTATGAAGACGGAGTAGCCAT TTTATGTGGAAACATTCTGTCATATAATATGAAAAACAATGTTTTCTTCTTTTGGGTGCTAGTCAGCTATCTCATAGGCT CCACCCATATGTGAATCTGAAACTCTTTTTAGTGTTAAACATGGTCGTTGCATATAATGTTCAGTGCAATTGCTTGATAG ATGATAACTCTCTTATGTCATTATTTATTTCCTTCTACCAGGTTTCTCCTGAAGTTAAAGGTTTTGAACCAGCGCAGGAT ACAAGAGATGATAGAACATATGAGGATACTGTTACAAGATATACTGAGAATGTTGGTGATATGAAGTCAGAAAATGGTGA TGTGCAGTTGAATTTAGCTGAGGATTCTGAGGAATTGAAGTCCAAACTTAATATAATGGATTCGAAACTAAGAGAGGTTA GTGCCTTGAATTTAGACAAAACTTTATGTTAATGATTTTATATAGAAGTTTTCTAGTCCATGTGCTAGTTATACTTATTC TCACTCAATGCTTGCTGCCAAATTATCTGAACTTAATTAGACTACTATCTTAAATGGGAATTGATGGAGAAAATGAATTA TGACATGTATTTTTAAAGCTATGTAATAATTGATAACTAAGCATTTTGCTTATGTGTAAAAGACAAATCTGAGATAATAT CATCATATACATATTGTTTTAGTTCTCGGTGTGCCAAGAAAGAAGAATTGTTGTCAACTCTATCTTCTTCTTCAGTATCA TTGAAGTTACCTGTTTTTCATTTGTGCATTAATCATTGTCAAATGTCATAAGTTGTCATAGAAGGTTGTAATATGCCTAC ACTTATACCATGTCAGTGTGGTTTGCAAAGATGTTATTTCAGCTTTGGTATATAAGACCTGGAGTCAGTTCCTTAAGTTG CCCTTTTTTATTATATTTTATTTAAACTTCAATGACCGAAGCATCTACATATGGTTATGACTTTTTGCAGGCTGAGGCAA CTATCATGATGTTGAATGAGGAGAGGCGCATGAATACGAAAGAAAAAGATTTTTTTAAGAGAGAGTTGGTAAGTTTGTTT GTTATTTTTAAGACCATGTCCATTTTATCAGTTTAAAAGCTGCATGATTTTTGTCTTACATATATTTTAGTAGTCTATTT TCCAAGCTGAATGGAAACAGTTGAGTTGAGGCAATACAGTTGAGAATAGTAAAAACTCAGGGGGTTAGAAAAACATTAGT TTGATAGTGTTCTCTTATGTTCATTGGTTAACATCTTTTCACTTGCCTGATTGGCTCTTGCTAAAGCATCAATTAAAAAT CCGTAACCTGCCAGGAAGTTAGGAAAACTCTATTATGTTAATCATATTTGCAATTTTTTCCCCCTTTTGATGAGTGAAAG ATCCACAATTTCTTGTTGTTTACAATTGTGTGGCGCTCTTATTCAGATGATCATTAAAAAATTCTAATGATGTTATTATG ATTCTGACCGGCATCACACATGCCTAAAGTGTGGGGTTAGTGTTAAATGTTTCATCTTCTTTTTTTATTTGAAAGGAATG CAATCATGTTCTTGAGCTATTATACTTTTCTTTATTGGCTATTTTCAATATGTGATATAAATATTTCCATGTTTTGGTAG GAGGTGTTGAAGAAAAAAATCAACACAAAAGGAGTTCAGACTGGCTTTCCATTACTGTTTGTTTGCATGGTTGCTCTTGT CAGTGTGGCGGTCGGATACTATGTTCATCCATAAGGGAGAAGAAAACTTGGTGTATAGGATAGCAGGCTTTCTGAAACCA ATGATTTCTCAGTATTGAATAGATAGAGGATGGTTCATTGTTTCTTATGATGGGTTTTGTTTTACTCCGTAGATGTTAAT ATATATATGTGAGATATGGGAAGCTTTGTGAAATGCATGTAAAGTGAACTACGTCTGTCAATAGAAACAAGCAGCCTTCT GAATTCTGATATATTTTAAGCCAAAATCATTGTCTTGTTCATTGATTTTCCAAGAAATGCTTCTTCTCTTTACCATAGAG AGAGAAAGTTGGACATTCTATCAAGCACCTTCTTGAATTTTCTTGTTTCTAGTAAAGGAGACATCACATTACAAATATAA TGTGACTACAGTACTGTGCTATAGAAGCAAATGACACTTTCATTTAGAATTACATAGCC
CDS sequence (LotjaGi4g1v0346700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTACAGAGCTTCTTCAAACCGAACCTGCTGAACTCAGATTTGTCTTTGAATTGAAGAAACAGAGTTCATGCTTGAT TCAACTTGTAAACAAGGTTGACCAGTACATTGCTTTCAAGGTTAAAACAACTTCACCCAAGAAATATTGTGTCAGACCCA ACACTGGCATCATTAGGCCAAACGAAACATGTGATTTTACCGTTACTATGCAAGCTCAGCGCGCGGCGCCGCCTGATATG CAGTGCAAGGACAAATTTCTTATTCAAAGCACAGTTATCCCCTTTGGAGCAACAGAAGATGACATCACATCTGATATGTT TTCGAAAGATAGTGGGAAGTTTATTGAGGAGAAGAAGCTGAGGGTAGTCCTTATCAGTCCACCATCTTCTCCAGTCTTGC TTCCTGTAAATGGGGATGTGAAGCAGGATCCGTCGTTCGATGAAATTAATTTGCAAAAAGATAGGGTGCCTACTGGTGTT GAAAATATGCCTCCCTCTCTTAAAGTTTCTCCTGAAGTTAAAGGTTTTGAACCAGCGCAGGATACAAGAGATGATAGAAC ATATGAGGATACTGTTACAAGATATACTGAGAATGTTGGTGATATGAAGTCAGAAAATGGTGATGTGCAGTTGAATTTAG CTGAGGATTCTGAGGAATTGAAGTCCAAACTTAATATAATGGATTCGAAACTAAGAGAGGCTGAGGCAACTATCATGATG TTGAATGAGGAGAGGCGCATGAATACGAAAGAAAAAGATTTTTTTAAGAGAGAGTTGGAGGTGTTGAAGAAAAAAATCAA CACAAAAGGAGTTCAGACTGGCTTTCCATTACTGTTTGTTTGCATGGTTGCTCTTGTCAGTGTGGCGGTCGGATACTATG TTCATCCATAA
Protein sequence (LotjaGi4g1v0346700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTTELLQTEPAELRFVFELKKQSSCLIQLVNKVDQYIAFKVKTTSPKKYCVRPNTGIIRPNETCDFTVTMQAQRAAPPDM QCKDKFLIQSTVIPFGATEDDITSDMFSKDSGKFIEEKKLRVVLISPPSSPVLLPVNGDVKQDPSFDEINLQKDRVPTGV ENMPPSLKVSPEVKGFEPAQDTRDDRTYEDTVTRYTENVGDMKSENGDVQLNLAEDSEELKSKLNIMDSKLREAEATIMM LNEERRMNTKEKDFFKRELEVLKKKINTKGVQTGFPLLFVCMVALVSVAVGYYVHP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 295 | 295 | 6.9E-57 | ||
| PANTHER | 1 | 295 | 295 | 1.5E-135 | – | |
| Phobius | 1 | 272 | 272 | - | – | |
| PANTHER | 1 | 295 | 295 | 1.5E-135 | ||
| Gene3D | 1 | 128 | 128 | 3.6E-39 | ||
| SUPERFAMILY | 4 | 133 | 130 | 3.14E-40 | ||
| ProSiteProfiles | 5 | 125 | 121 | 29.291 | ||
| Pfam | 6 | 109 | 104 | 3.0E-30 | ||
| Coils | 217 | 251 | 35 | - | – | |
| TMHMM | 272 | 294 | 23 | - | – | |
| Phobius | 273 | 294 | 22 | - | – | |
| Phobius | 295 | 296 | 2 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Endoplasmic reticulum membrane | The lipid bilayer surrounding the endoplasmic reticulum. |
Expression pattern of LotjaGi4g1v0346700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…