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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0360700 |
| Transcript ID | LotjaGi4g1v0360700.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | KH domain-containing protein; TAIR: AT5G46190.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|P58223|Y4837_ARATH KH domain-containing protein At4g18375; TrEMBL-Plants: tr|I1KRV4|I1KRV4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0360700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:73934897..73941157) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGCGAGACTGGAAAACGATACCATTCACACCGAGACAATGACGGTGACCGAAGAAATCAAAAGCGACGCGTGAATGA CAAAGACGAAAAGGGCAACGATGAGGTGGTTGTTTTTAGGATACTCTGTCCAGATGAACTCATTGGTAGTGTCATTGGGA AGAATGGCAAAGTCATAAATTCGATACGGCAGGAGACTCGGGCGAAAGTCAAGGTGGTGGATCGATTTCCGGGTGCCAAG GACCGGGTTATAACGATCTACAGCTATGTTAAGGAGAAGGAAGAGGTTCAGATTGATAATGATAATGAGTTTGATTATAA GAAGCCGTTATGCGCTGCCCAAGATGCTCTTCTCAAGGTTCATGTCGCCATTGTGAATTCCGTGGCTGCTGCTGGGGATT CTGATAAGAAACGGAAGGATAGGGACGTTAAGGATGAGTGTCAAATCCTTGTTCCGTCGAGCCAGTCTGCGAATATCATT GGTAAGGCTGGTGCTACCATTAAGAAGTTGAGAAGTAAGACGAGAGCTAATATCAAGGTTAATGCCAGGGATGCAACGGA TCCAACACAATCATGTGCTATGGAGTTTGATAATTTTGTCGTGGTTAGTATTATCAATGCTATGAAACTTAAATGTGTTA TTGCATGGATACATAGTTACTTCTTTGATTTGAATACTTGCATCTAACCAGCTACACACAAATACCAATTGAGAGTGCCA TCATGTCCATATTTCTTCTGTGTATCAAATTATTATGTAAATTCAATCACTGCAATTGGTAGCTAATCAGCTCATGGATG CACTGATGCACACATAAATGACGTGTATGATCGCATACTCATGTAGACCAGAATCAAAAATCTGTTTGGATGCTAGAGCT GGGTTTTCTTATGATAATTCTATATCTAATTTAATGGTTATAATAATTTGAATGTCAACTTCATTTTTGGACATGCAGTT TCTTAGAGAATTCTGCAATTTCTTTTTCTTTTGTCATATTTTTATTCAGGATTTTTTGCATTTGCTGGATCAAGTCCATG GTATTAAACTTCTTGCTTTCATTATGAGTAGATCACTGGTGAATCAGAGTCAGTTAAAAGAGCACTATTTGCAGTTTCTT CTATTATGTACAAGTTTGGTCCTAAAGAAGACATCTCTCTGGACACAACTGTACCTGAAGCTCCGCCCAGTATTATCATT CCTTCCGAAGTTCCATATTATCCACACGGTGGACTATATCCATCTTCAGATCCTATTATCCCACCTAGAGCTGTTCCTCA AATAATGGGTGGTACAAACATACAAGATGTGCAAGGTTATGCTGACATAGGAAATACATGGCCTCTGTACTCATCTGCCC TTCCAGTAGTTTCTGGTGGTGTGGATGCTTCTCAGTCTGAGGAGTTAATTATTAGAATGTTATGCCCCTCTAACAAGATT GGGCGTGTCATTGGTAGGGGAGGGAGTACGATTAAAAGTATGAGGCAGGCAAGTGGTGCTCGTATTGAGGTTGATGATTC CAAGGCTAATCATGATGAGTGTTTAATCATTATAACCACAACAGAGGTACACAATCTTGGCTTCTTCCTTTTTATCTATA AATTAAATTTTCTCATTCAATAATTGTTCAAGTTGTTAAACTAGGTAGAATTCATGATATACCAGTGTATTTGATTAGTT TATTTTGCTTCTTGAAATGTAATAATCAACTTATTATAGGAGATAGCTTTGGGGTGAAAAGCTTGTTTCTTAGAGCAAAA TGATTAAAACTAAATGTGACTATCCAGCTGAAAAGACTTTGGCACTTACAATTTATCAAGGATTTTTTGTTATTTCCGTT ATATAAATTTGTTTCTCGAAATCACATGCAATCATAAGAAAAATTATAAATCATTTAAAACTTGAATATTAAAATGAGGA ATTGATTCTTGCTTTTCGGAGCTTGAGTGATTTGTTGCCAAGCTTCGTGCATGTGTTTGCTTCTTTAAAGTTCAAATGGT TTGAGCTCTAGTTTATTTTCATGTACAACCTCTATTATGATGTGATAAATTTCTTTCCTATCTTCCTTTAAAACATGTTA CATCCATAGTTGAAGGAAATATTTTTTAGTTGTTACTTGTTAGTTGTTACTAAGCCAGCAGTTCTACCGCTTGGAACAAT GAGGATCAATGCTCACTAATGTGGTGTACAAAAGGATCCACTTGTCAACCGCAATGTAGAAAGAAACAAGAAAGAAAAGC AGTCTTTCTCAGAAAATATTGGTAGAACAGGAATTTTACATTATTTCGGGGGTATGGGGGATGGGATTCCTTTATATTAC TCTGAAAAGCTAAATATGTCAAAATTCATTATGTCAGCATTTGTGAATAGTTATTGCTCTTTCTGTGAGGTGGTAATGAA GATTAAAGTTCCTTTGTCACTTTTCATGCCATCAACTTATGAAGTAGTTTTTCTCCCCTTATGCTTGTGTGGCTGATGCA CAGGTAGTACAGGTGTACTAGTAAATAAGATTAGGGCTCTATTTTTGTTTAACATGAAATCTTCTTCGAATTTTGGTGGG TTTCAGAACCAGGTTATGCTTTATTTACTAGTTTGTGGATTGTGTGTTCCATATTCTCCTTGCTTTGCATGTAATTATCT TTTTCCCTGTATATATTGATTATTTAGTCTCATTTTATCACCAAGTGGAAAATGATCATGTGGTTATGTACTTTGTAGTC GCCAAGTGATCTAAAGTCCATGGCAGTTGAAGCTGTTCTGCTGATACAAGGGAAGATAAGCGATGAAGACGATACTGAAG TTTCAATTCAGCTTCTAGTTCCATCCAAAGTGATAGGTTGCATTATTGGTAAAAGTGGTTCAATCATTAATGAAATTCGG AAGAGAACTAGGGCAGATATTCGAATCTCTAAAGGCGATAAGCCAAAATGTGCTGATGTTAATGATGAACTTGTTGAGGT ATGACTCTTTTTAATGATAAGCCAAAAATTTCTTCATCACTTTTCTTGGTTTATTAATATATTTATCCAGCAAGGCTTTT TGGTATGAAAGCTATTCTACAGAAGTTGTTGTGAATGTCCAGTAAGTCAGTAAGCAATTATGGGTGAAGAAATAAGTGAA TTAGAAAGTAAACGAGTAACTAATAAATCATGAGTCATTTCATGAAAACTCAATTGTATCATTTTACAACTTTCTTATTT ATTTTATCCAATGTTCTTTTGAACGCAGGTGGGCGGCGCTATTGATTGTGTCAGAGATGCACTAATCCAGATCATCTTGA GACTTAGAGATGATGTATTGAGAGAAAGGGACACTGGACATAATCCTACTATAGGTGGTGAATCCTTGTACTCAGGTGGT GCTGCTTATTCATTGCCACCTATGCTGCCTTCCGTATCTTCTGTTGCTGCTCCAATGGTCTATGATCAGAGGGCGGAAAG TGCAACTGGCATGGGCATGCTTTCTTCAAGCAGCCTGTATGGATATGGATCGTTGTCGGTATGTCTCTTCTTTCTTACCA TATATGGTTATATCATAAGTCATAACTAGTCCTTATTTCTAATAGTATTTTTGGTGGATAATTTGTTTTTATATCTCAGT GGTGTTGGTTCTGGTATGATGTTCTAGGATTAATCAATATATGGCGAAGAAAAGTTGTTTTTTCCTACTTCAGGCTGAAA TTCTTCAACTGCAGAAAGAAAATAAGGAATCTGCCTAAAGGAAAGAACAAAACCAAAAACAACCAAACAAAGAAAGAATC AATCTAGCAAAACTTCCCATTTCCCAATCCCTTAAAACGTACCTTGATGTTGTAACATCTTATGCTTAATGTGTGTGTTG ATTATTTTATTCTTGAGAAAGTTATTTTAAATATAGGAAATGTCCTGTAGTATGTGTTGAAATTTTATGTTTCAAGTAGT AAAAGAGGACTACAGAATAGAGAAATTCTAAATAACAGGATTGAAAAGAGATGTGCTACTCCCTCCGTTCCTATATATAA GTCACAAATAACTAATTCTCTTAGATTAAGAAAAGTAGTTACTAGTAATAAATTTGTAAAAAAAATGATTTACTTTCCTA GATTACCCTTATTTACTTTCCTATGATTTTCTCTCTCCAAGTTAATACTTCTAAAGTTTATCATATCTTTCATATTAAAT ATGAGGGTGAACTTGGAAAAAATTATTTAATGCTTCCTAGATATTAGAAAGTGACTTATATTTTGTAACAAATTTTTTTC AAAAAATGTGACTTATAATAGGGAACGGAGGGAGTATTATACAAAGTACTCTACTTGTAAACCTATTTGTGGTAATAATT TGGCCAACTGGGTAAGTACCAGTATATTCCTACTTGTACAGGCCTAGATAATAAATATGACTACTTAAACGTAACAAAAG ACCCCTAAAATAATAAGAATACTATTATTCAAAGCTTTCACATATAATTAGAAAGGGGGAAATTTTATATTGTTGCACTT TCAAAATTTGATCAGATTGTTCGTTAGAGCTGTTCCTTTTATGTAGTACATCCTTCCCCTTGTAATACTTGAAAAATGCT GATAAATTACATTCCTTCTTTATTTTCTTCCTTCTTGTTCCATATCTATATTCCATATTTAGTTTAAAATTGCATGTCGG TGATCGCTTCCTTTGCTTGGTTCTATGCAGCAGATGGGGGAAAGTGGCTATGGATCTATATCCTCATATCCCACCAAGCT GTATGGAAGGTTAGTATGTATATTTGTGAAAAATTATGTGAATACTTTATTGCTGGTTCGGAGTTTGTGAAAATGCTTTG GATATTGTGATTTTGGCAAAACCGGGTCTGCAATGAAGTACTTATTTTTGGACACCTTTTTTCTTATAGGAGATAATTTT AGTGTCAAACTTTTCAAATCCAGCGTAAAAGCATCTCTCTCACATCCACTCAAACTATGATTTGAGAATAAAATTCCGTC AGGCACTCCATAACTGGCATTTTGCCAAACATTGAATTAAGGATGAAACCCCATTTGTACCCTCTTAACATGTGTTTAGG CCTGGCTAGACTTGCAGTCAATCCTCTTTTCGCTATATTAAATCATTTAACATTAACTGATTTTTTTTATATCTCTAATG TGCACAGTTTGCCTCCTCCATCAACTCTGGATATCTTGATTCCTGCTAATGCTGTTGGTAAAGTATTGGGTAAAGGAGGG GCTAATATAGCCAATATAAGGAAGGTTGGTTCATGGCTCAATTCTGAATTTGTTAATGTTTTATTCTATTTCAAGAGGAA TTCTTTTGTTTTGAGGTATCTTTATCTTTTATCTATTTCAAACTTAATGTGTAGTTTGGTTCATGCTGCTGTATTTCATT GTTCTGACTCATTATGTCTCTTTTTTATGAACTGAATAGAATTACTAGTCTTTAAACTTCACATCATGCAAGGAAAAGCC CAATAGAGCATCTTCATTAAGAAAAGAGCATCACATAGAAGATAATCCAATTAAAAGGGTATACTCTAAATGGTTATTGT GAACTTTGTTGTTGATCGAGTAGACGAGTACAATGGGGTTGATTTATCCATTTAGGCAACTCACATAGTAAAAAGGCTAG GTGGTTGTATTATCATGAGATTATCATGCTATCTCAAATTCAATTCTTTTTGTTGGGTGATTGTTTATTGCTTGCTTATT TACATTACACCTTCTCAGTCCTTTTATTTGTAGGAAGGTAAGAGATCCACTTTTTATCATATCAAGTGATATGTCATGGG TGGAAACAATTTGTGAAGAGACTAATTAGAAAAGAATTAGATTAAGGACTTCCATATTCCTTGATCAATGATGTTTTCCA CAACTTTTATGTTGTCTGATGTCATCTAATCATATCCTTCCGTGCCATCTAATTTTTGAAATGTTCTCTTTTCCTATTTT ATCCTTGAGCAACCCAATAAAGGTCGTATATATGTTTATTCTGTGAAGGGCTAGCGCAGCTGGAAAATTTAAGTTTATTC AACTTTGGCTTGTATTGAAATACCAATTTGTTTTTCGAAAAGAAAACCAATTTGTTTATTATCCTGTACCCTAGCGTATG TATCACAGATGTCGACCTAATGCAAAATTTCCTTCATTTGATCTCACACCAGATTTCAGGAGCTACAATAGAGATTTCTG ACGCTAGAGCCCGTGGTGATCGTATTGCCTTGATATCTGGCACACCTGAAGAGAAGCGTGCAGCTGAAAACTTGATCCAG GCATTTATCATGGCAACCTGA
CDS sequence (LotjaGi4g1v0360700.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGCGAGACTGGAAAACGATACCATTCACACCGAGACAATGACGGTGACCGAAGAAATCAAAAGCGACGCGTGAATGA CAAAGACGAAAAGGGCAACGATGAGGTGGTTGTTTTTAGGATACTCTGTCCAGATGAACTCATTGGTAGTGTCATTGGGA AGAATGGCAAAGTCATAAATTCGATACGGCAGGAGACTCGGGCGAAAGTCAAGGTGGTGGATCGATTTCCGGGTGCCAAG GACCGGGTTATAACGATCTACAGCTATGTTAAGGAGAAGGAAGAGGTTCAGATTGATAATGATAATGAGTTTGATTATAA GAAGCCGTTATGCGCTGCCCAAGATGCTCTTCTCAAGGTTCATGTCGCCATTGTGAATTCCGTGGCTGCTGCTGGGGATT CTGATAAGAAACGGAAGGATAGGGACGTTAAGGATGAGTGTCAAATCCTTGTTCCGTCGAGCCAGTCTGCGAATATCATT GGTAAGGCTGGTGCTACCATTAAGAAGTTGAGAAGTAAGACGAGAGCTAATATCAAGGTTAATGCCAGGGATGCAACGGA TCCAACACAATCATGTGCTATGGAGTTTGATAATTTTGTCGTGATCACTGGTGAATCAGAGTCAGTTAAAAGAGCACTAT TTGCAGTTTCTTCTATTATGTACAAGTTTGGTCCTAAAGAAGACATCTCTCTGGACACAACTGTACCTGAAGCTCCGCCC AGTATTATCATTCCTTCCGAAGTTCCATATTATCCACACGGTGGACTATATCCATCTTCAGATCCTATTATCCCACCTAG AGCTGTTCCTCAAATAATGGGTGGTACAAACATACAAGATGTGCAAGGTTATGCTGACATAGGAAATACATGGCCTCTGT ACTCATCTGCCCTTCCAGTAGTTTCTGGTGGTGTGGATGCTTCTCAGTCTGAGGAGTTAATTATTAGAATGTTATGCCCC TCTAACAAGATTGGGCGTGTCATTGGTAGGGGAGGGAGTACGATTAAAAGTATGAGGCAGGCAAGTGGTGCTCGTATTGA GGTTGATGATTCCAAGGCTAATCATGATGAGTGTTTAATCATTATAACCACAACAGAGTCGCCAAGTGATCTAAAGTCCA TGGCAGTTGAAGCTGTTCTGCTGATACAAGGGAAGATAAGCGATGAAGACGATACTGAAGTTTCAATTCAGCTTCTAGTT CCATCCAAAGTGATAGGTTGCATTATTGGTAAAAGTGGTTCAATCATTAATGAAATTCGGAAGAGAACTAGGGCAGATAT TCGAATCTCTAAAGGCGATAAGCCAAAATGTGCTGATGTTAATGATGAACTTGTTGAGGTGGGCGGCGCTATTGATTGTG TCAGAGATGCACTAATCCAGATCATCTTGAGACTTAGAGATGATGTATTGAGAGAAAGGGACACTGGACATAATCCTACT ATAGGTGGTGAATCCTTGTACTCAGGTGGTGCTGCTTATTCATTGCCACCTATGCTGCCTTCCGTATCTTCTGTTGCTGC TCCAATGGTCTATGATCAGAGGGCGGAAAGTGCAACTGGCATGGGCATGCTTTCTTCAAGCAGCCTGTATGGATATGGAT CGTTGTCGATGGGGGAAAGTGGCTATGGATCTATATCCTCATATCCCACCAAGCTGTATGGAAGTTTGCCTCCTCCATCA ACTCTGGATATCTTGATTCCTGCTAATGCTGTTGGTAAAGTATTGGGTAAAGGAGGGGCTAATATAGCCAATATAAGGAA GATTTCAGGAGCTACAATAGAGATTTCTGACGCTAGAGCCCGTGGTGATCGTATTGCCTTGATATCTGGCACACCTGAAG AGAAGCGTGCAGCTGAAAACTTGATCCAGGCATTTATCATGGCAACCTGA
Protein sequence (LotjaGi4g1v0360700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGETGKRYHSHRDNDGDRRNQKRRVNDKDEKGNDEVVVFRILCPDELIGSVIGKNGKVINSIRQETRAKVKVVDRFPGAK DRVITIYSYVKEKEEVQIDNDNEFDYKKPLCAAQDALLKVHVAIVNSVAAAGDSDKKRKDRDVKDECQILVPSSQSANII GKAGATIKKLRSKTRANIKVNARDATDPTQSCAMEFDNFVVITGESESVKRALFAVSSIMYKFGPKEDISLDTTVPEAPP SIIIPSEVPYYPHGGLYPSSDPIIPPRAVPQIMGGTNIQDVQGYADIGNTWPLYSSALPVVSGGVDASQSEELIIRMLCP SNKIGRVIGRGGSTIKSMRQASGARIEVDDSKANHDECLIIITTTESPSDLKSMAVEAVLLIQGKISDEDDTEVSIQLLV PSKVIGCIIGKSGSIINEIRKRTRADIRISKGDKPKCADVNDELVEVGGAIDCVRDALIQIILRLRDDVLRERDTGHNPT IGGESLYSGGAAYSLPPMLPSVSSVAAPMVYDQRAESATGMGMLSSSSLYGYGSLSMGESGYGSISSYPTKLYGSLPPPS TLDILIPANAVGKVLGKGGANIANIRKISGATIEISDARARGDRIALISGTPEEKRAAENLIQAFIMAT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 29 | 29 | - | – | |
| PANTHER | 3 | 621 | 619 | 1.4E-269 | – | |
| PANTHER | 3 | 621 | 619 | 1.4E-269 | – | |
| Gene3D | 32 | 98 | 67 | 2.2E-14 | ||
| SUPERFAMILY | 33 | 91 | 59 | 4.59E-14 | ||
| SMART | 35 | 105 | 71 | 7.2E-10 | ||
| ProSiteProfiles | 36 | 97 | 62 | 12.936 | – | |
| CDD | 38 | 86 | 49 | 2.15685E-14 | – | |
| Pfam | 39 | 88 | 50 | 4.8E-12 | ||
| SMART | 143 | 221 | 79 | 2.3E-11 | ||
| Gene3D | 143 | 221 | 79 | 5.3E-15 | ||
| ProSiteProfiles | 144 | 216 | 73 | 14.676 | – | |
| CDD | 146 | 217 | 72 | 6.15952E-12 | – | |
| Pfam | 147 | 217 | 71 | 8.6E-13 | ||
| SUPERFAMILY | 147 | 223 | 77 | 9.64E-12 | ||
| Gene3D | 310 | 389 | 80 | 1.3E-14 | ||
| SMART | 311 | 383 | 73 | 8.2E-11 | ||
| ProSiteProfiles | 312 | 382 | 71 | 14.215 | – | |
| SUPERFAMILY | 313 | 390 | 78 | 1.07E-13 | ||
| CDD | 315 | 383 | 69 | 5.3465E-14 | – | |
| Pfam | 315 | 363 | 49 | 7.3E-13 | ||
| SUPERFAMILY | 385 | 468 | 84 | 8.23E-15 | ||
| SMART | 392 | 466 | 75 | 3.5E-11 | ||
| ProSiteProfiles | 393 | 461 | 69 | 15.871 | – | |
| Gene3D | 393 | 471 | 79 | 5.7E-17 | ||
| CDD | 395 | 462 | 68 | 2.70869E-18 | – | |
| Pfam | 396 | 461 | 66 | 7.3E-12 | ||
| SUPERFAMILY | 552 | 626 | 75 | 2.63E-15 | ||
| Gene3D | 557 | 629 | 73 | 3.5E-17 | ||
| SMART | 558 | 627 | 70 | 1.7E-13 | ||
| ProSiteProfiles | 559 | 622 | 64 | 16.94 | – | |
| CDD | 561 | 623 | 63 | 1.66944E-12 | – | |
| Pfam | 562 | 623 | 62 | 7.7E-14 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of LotjaGi4g1v0360700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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