Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0363600 |
| Transcript ID | LotjaGi4g1v0363600.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ABC subfamily C transporter; TAIR: AT3G13080.1 multidrug resistance-associated protein 3; Swiss-Prot: sp|Q9LK64|AB3C_ARATH ABC transporter C family member 3; TrEMBL-Plants: tr|A0A072TTN1|A0A072TTN1_MEDTR Multidrug resistance protein ABC transporter family protein; Found in the gene: LotjaGi4g1v0363600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:74272833..74278480) extracted from Lotus japonicus Gifu genome v1.2.
ATTAGTCTCTGGGGCCTTAACCAACATCTATGGGAGTAAAAGTTATGTAGCCCAAAGTGCCTGGATACAATCTGGAACTA TAAGGAAGAATATATTGTTTGGAAAGAAAATGAATAGAGACTTTTATGAGAATGTTTTGGAGTGTTGTGCTTTGCACCAG GATATCAACTTATGGAGTGATGGAGATTTGACTCTGGTGGAGGAGAGGGGTATAAACTTAAGTGGAGGGCAAAAACAGCG AATTCAACTAGCAAGGGCAGTTTACAATGATTCAGACATTTATTTTCTTGATGATCCTTTTAGTGCGGTCGATGCACATA CCGCGACTCATTTGTTTAAGGTTAGTAGTGCTGATGATTATTGCTATGGTGTTTTTTCCATTCATGCTCATGAACTTCAT TATTTCACTTTATTTTTTTTTTCAATGAACTTCACCAAAAAGTGGAAATTTTATGCAGAAATGTCTTTTGGAGCTATTAT ATGATAAAACAGTTGTGTATGCTACCCATCAGCTGGAATTCTTGGAAGCTGCAGATCTTATTATAGTAAGCTACCGAACA CTTTTCTTTCACTGATAAAATTAGAATGATTGATGGAATTCTCACCAGTAATATACTTTTGGCAGGTATTGAAAGATGGG AAAATAGTTGAGTCAGGAGGATACAATGATCTCATAGCACGCCCCAATTGTGAACTTGTTCGACAAATGGCTGCTCATGA AGAAGCAGTAAACCATATAAATCCATGCCAAGAAGATGATTCTGTTGGCTCCAGACCCTGCCAAAAAAATCAAATTGAAG CTGTGGAAGAAAATATTCAAGAGACTATCATGGATTGGAAGAGAACCAAAGAAGAGGAAGCAATGACGGGTCGAGTGAAA TGGAGTGTTTACTCAACCTTTGTCACTTCCGCTTATAGAGGAGCACTAGTGCCGATCATTCTCCTTTGTCAAGTTCTCTT TCAAGTATTGCAAATGGGAAGCAATTATTGGATTTCTTGGGCAACAGAGGAGCGGGGCAGGGTGAGTAATGGGGAGCTTA TGGGAACATTTATTCTTCTGTCTGGTGGCAGCTCCATCTTCATACTAGGAAGGACTGTTTTAATGGCAACAGTTGCCGTC GAGACTGCTCAGCGTCTTTTTCATGGAATGATCTCATCACTTTTCAGGGCACCTGTGTCATTTTTTGACGCCACACCTTC AAGCAGGATTATGAGCAGGGTAAGTTTCACCATGGTTATGCATTTGATCATTCATTGCTATCAGTTTTATTCATATTTCA ATCACTCTCTTTATGACCATTGCAGTCATCAACGGATCAAAGTACTGTAGATACTGACATACCATTCAGATTAGCTGGAC TAGTATTTGCACTCATCCAGTTATTGAGTATCATCATACTAATGTCCCAAGCTGCATGGCAAGTCATTCTTCTCTTTTTT GTGGTTCTTGCTATCTCCATCTGGTATCAGGTAAGGATTATCAATCTTTGAAATTTACTAAATCTAAATTACATCATTTT CATGTTAAGATCTTACAAAGCATGACCTAAAAAGATTATAGGTCAGTTCATTTCATGAGAAACCTCATTTTGCAATAAAC CTTTGCATGTTGTGCTCACCTCTTCCATGATTCAACCTAGTATTCTAATGATGAGGGAGTTATGTACTTCTGCAGGCTTA TTATATCACTACAGCAAGGGAATTAGCCAGGATGGTAGGGATTCGAAAGGCACCAATCTTGCATCACTTCTCTGAATCAA TTGCTGGGGCTGCTACGATCCGTTGTTTCAATCAAGAGCAAATATTTTTAACCAAAAAAATGGCTCTAATTGATGATTAT TCTCGGGTAGCCTTTCACAATTATGCCACCATGGAATGGTTATCAGTCCGAATCAACTTTCTCTTCAATTTGGTCTTCTA TTTTGTTCTTGTCATCTTGGTCACTCTACCGAAGTCTGCCATTGACCCCAGTAAGTTTCTTACTACCCATTTCTTCTTAT AAGTGATAGAGGTTCATACTATTGTGACTACCAATTTTCTACTAGTGCAATTAAGAAACTCCATGTAAAGTTACAGGTTA TTGATTAACCTCTGGTTACAATTGTTGTGACTTCACAACCAAAAGAAAAATAATTTTGAAGATAAATTGATTTTTTCTAC TTGAGCCTTCTAAAGGTGACTGTAATACCATGATTCTAAGTAACTAATTATTGATCTATGGGAATTGGCAAATATACAAC ACTAGAATAACTTTTGTTCTATGTTACTTATGTGTATTATTATGTGTAATTTCAGTGTATCATGGAAATATGTTAAAAAG GAAACCTAGTGCTTTGAAGCTACTGCCACGGCAGGGTTCCGCAAAGTGTTTGATCCATCACGGATCTAGGCAGTCTTACA TTACATTTTCAAGAGGCTGTTTTTTTGTATATGTTTTTCCTCTCTCAAGATAGTACTCAAAGCATAAGGAGAGGTTCTCG AATAAGTCATTTCTAATAAGTTTAAGCGCATGAGACCAGTATGCCTCAGCTTAAGGCAGAATGTTAGAAGCATCTATTAT GTCTAGGTTTTGGAAAAATGCTTAGGCTCAATGTATCAGGTAACTATAGAGTTTAGGGAAATTGTATCTTTGTACTAATA TTGCATCTGTGTTGTGGTTGAATACCTCTCAACAATATGTATAAATAATGCCTGTTAAAACGGTAAAGAAATAATTTAGA TTGGATCAACTAACAAGTACATCAGATTTTAAAGTTGGTTCTAATAGAAATCTTGGTTTCATATCTTCAACTTATTGCTT CATCTGGTTTTCAGGCTTGGCAGGGCTAGTTGCTACTTATGGTTTGAACTTGAACGTGCTTCAGGCTTGGGTGATTTGGA ATCTTTGCAATGTTGAAAACAAAATGATATCTGTTGAGAGAGTATTGCAATTCTCTAACATACCAAGTGAAGCACCATTA ATTATTGAAGATTGTAGGCCTGAACCAGAGTGGCCTGGGGATGGAAAAATTGAACTCCATAACCTTCATGTACAGTATGA TCCTGCTGCTCCTATGGTTCTCAAAGGTGTAACTTGCGTCTTCCCAGGACGAAAGAAAATTGGAGTTGTAGGCAGGACAG GGAGTGGAAAATCTACTCTGGTGCAAGCCCTATTTCGAGTGGTGGAGCCTTTGGAAGGGTGCATACTCATTGATGGTGTA GATATTTCCAAGATTGGTCTGCAAGATTTAAGATCTAAGCTTGGCATAATTCCTCAGGATCCGACCTTGTTTCTAGGTAC CGTAAGGACGAACTTGGATCCTCTGGAACAACATACAGATCAAGAACTTTGGGAGGTTAGTACTAAATTACTTTCTTGAA AATGTCAATATTTATCTCATTACTAAAGAAAACTGTACTTTTTCAGGTTCTAAGCAAATGCCATCTTGCCGAAATAGTAA AGCAAGATCCAAGGCTTCTTCATGCACCAGGTATAGATATATCTGTTAAACCAATCAGATCATTAAGAAGATAACATAAT AACCGCTCCTCCTGCTCTTCAGTTATGGTGAAGTTTTTTCTTTTTCTTAAATGCTTGTATTGCAAATTTGTGTAGTGGCT GAAAATGGAGAAAATTGGAGTGTCGGACAAAGACAGCTAGTTTGCCTTGCTAGGTTGCTACTGAAGAAAAGAAAAATTTT GGTGCTTGATGAGGCAACTGCATCGATAGACACTGCAACTGATAATTTAATTCAGAAGACTATCAGGGAAGAAACAAGCG GATGCACTGTCATTACTGTGGCACACAGAATTCCTACAGTCATTGATAATGATTTGGTGTTGGTCCTTGATGAAGGTAAT AGAAGACTCAATATGTTCTTCAATATTATAATCATAGCATTAATGACAATTAAACATAGGAGAACATATTTTCTCAAATA TAGCAGTGTATCAGACCATCCAGAAGGATTTAACTGGAGGATTTTTTTAGGGAAGGTGAAAAAGGAATTCACATATTGGT GCTAGGTTGAGTTTAACTTAATTTTCATGAATAATGGTAGTACTGCACTCTATTTTGTGAACTTGGAGCTAATAAACACT ACTGTTCGGATGTATACAGGGACAATTGCTGAGTATGATCAACCATCTCAATTGTTACTGAACAATTCTTCTTCATTCTC GAAGTTGGTTTCAGAATTTGTGAGGAGATCATCCCAAAGTAACTGCCACAAAGGATAACGAATGAGAACAAACACAATTC ATTATTTCAATGCTGAGGAGAATGATTTCTGACAATGGAAAGCAGCTCAACAAGTCCTGAGACATTTACAACCTAACGAT GAAAGTCAATATATATTGGGGCATGGTAATCATGATGCATAGTTATTTCACAAGCTTGAATGATTTTCAAACTGACTTTT CCTGTTTCAAACCATTTACCTCTTGCAATATTGGTTTCATTGCAAGTTATTTATAATGTTAATGACAACTCTAAATTTGG AGCTTCAGAGCCCTAGACAAGGCATCAAGAGACCTGTTTTTTATGATCCAATTTTTTGGATGTCATATCTCATATCTCAT ATCTTGTGCATTAAAATGAACAGTTATGATCCAGGTGTAACTCTTAAGCTGGCCAAGTTACACATACCAATGAAGGTTTT TATGTGGCTGGCGGAGAGCAGTGTGTGGACGGGGTATTTGTAAAAGACTCTTCGATTTTAAGTTAGTGGAAGAACCAACA GAATGAGACTAAGGTGAACAGTGATATGCTGTTGTTACTTTCTTTGTATTTGCTGTCCATCATTAACCAAGACCTGGATG CAGATATTACTTTTCACAGAGGCATTTCTCCTGGTAAATTCTCCAGTTTATCTTGAACAAAACTTTCATTCCTTGAACAT ATATTACCAAAATTGCAATATTTAACTAGTGCTCCTTTATGTTGTTTGGTTATTTCCTTTGACCTCACAATGTCATTGCA TTTGTAGCTGAAAATATTATTCTTCCAGATGTGCATTTGTAAATGACTTTTATACTTAGGTAACAGTTTTCTCCACAAAT TAGAATTGTGTGCACTGTTTTATGCCTCTCACCTCAAATTATTAAAGAATCCCCTATCTTGGTCTGATGTCCATCCCTAC ATTGATTTTAGAGACACATGTTCCCAGTTTTGAGAGAAGTTTCAGTTGAAATTCCAAACTCTTAATCTTGTCTTAATCTA TGACTGTTTTAGTAGCTTTTGCATTATAATGTTTTACCACTTTGAAATACAGAAGGATATCACTTGCATTTACCATATTC TGCTGATGATCTTTTTCATTGAGGCTCTAAATTGGATGAGCTTATAACCTCTAGTTTTTGTTTTCTGAATTAGGTATCAT CTGTTTATGATCAATCTAGAATGCAAGAAATTTGAGGAAATTCTAATGAGCTGATTTGTAACTGTGAGGAGCTGATCTGT TCAATTTGCAAAGGTTACTGATTCAGAGAATTCTCAGTGACTGATCTGCTATGCTCCAGATTCATGAGGCCCATTCCAGA GCTAGTTGGATAAGTTGGTATCAATAGAAGAAAACCTCTAAGATGGAATATTATGTTGTAGGTGGTAGGTGAAATAATAA AGTATTATGTCCAATTTTGAGAAAAAGGTGAAAGTTACCTTGTTAGAG
CDS sequence (LotjaGi4g1v0363600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATAGAGACTTTTATGAGAATGTTTTGGAGTGTTGTGCTTTGCACCAGGATATCAACTTATGGAGTGATGGAGATTT GACTCTGGTGGAGGAGAGGGGTATAAACTTAAGTGGAGGGCAAAAACAGCGAATTCAACTAGCAAGGGCAGTTTACAATG ATTCAGACATTTATTTTCTTGATGATCCTTTTAGTGCGGTCGATGCACATACCGCGACTCATTTGTTTAAGAAATGTCTT TTGGAGCTATTATATGATAAAACAGTTGTGTATGCTACCCATCAGCTGGAATTCTTGGAAGCTGCAGATCTTATTATAGT ATTGAAAGATGGGAAAATAGTTGAGTCAGGAGGATACAATGATCTCATAGCACGCCCCAATTGTGAACTTGTTCGACAAA TGGCTGCTCATGAAGAAGCAGTAAACCATATAAATCCATGCCAAGAAGATGATTCTGTTGGCTCCAGACCCTGCCAAAAA AATCAAATTGAAGCTGTGGAAGAAAATATTCAAGAGACTATCATGGATTGGAAGAGAACCAAAGAAGAGGAAGCAATGAC GGGTCGAGTGAAATGGAGTGTTTACTCAACCTTTGTCACTTCCGCTTATAGAGGAGCACTAGTGCCGATCATTCTCCTTT GTCAAGTTCTCTTTCAAGTATTGCAAATGGGAAGCAATTATTGGATTTCTTGGGCAACAGAGGAGCGGGGCAGGGTGAGT AATGGGGAGCTTATGGGAACATTTATTCTTCTGTCTGGTGGCAGCTCCATCTTCATACTAGGAAGGACTGTTTTAATGGC AACAGTTGCCGTCGAGACTGCTCAGCGTCTTTTTCATGGAATGATCTCATCACTTTTCAGGGCACCTGTGTCATTTTTTG ACGCCACACCTTCAAGCAGGATTATGAGCAGGTCATCAACGGATCAAAGTACTGTAGATACTGACATACCATTCAGATTA GCTGGACTAGTATTTGCACTCATCCAGTTATTGAGTATCATCATACTAATGTCCCAAGCTGCATGGCAAGTCATTCTTCT CTTTTTTGTGGTTCTTGCTATCTCCATCTGGTATCAGGCTTATTATATCACTACAGCAAGGGAATTAGCCAGGATGGTAG GGATTCGAAAGGCACCAATCTTGCATCACTTCTCTGAATCAATTGCTGGGGCTGCTACGATCCGTTGTTTCAATCAAGAG CAAATATTTTTAACCAAAAAAATGGCTCTAATTGATGATTATTCTCGGGTAGCCTTTCACAATTATGCCACCATGGAATG GTTATCAGTCCGAATCAACTTTCTCTTCAATTTGGTCTTCTATTTTGTTCTTGTCATCTTGGTCACTCTACCGAAGTCTG CCATTGACCCCAGCTTGGCAGGGCTAGTTGCTACTTATGGTTTGAACTTGAACGTGCTTCAGGCTTGGGTGATTTGGAAT CTTTGCAATGTTGAAAACAAAATGATATCTGTTGAGAGAGTATTGCAATTCTCTAACATACCAAGTGAAGCACCATTAAT TATTGAAGATTGTAGGCCTGAACCAGAGTGGCCTGGGGATGGAAAAATTGAACTCCATAACCTTCATGTACAGTATGATC CTGCTGCTCCTATGGTTCTCAAAGGTGTAACTTGCGTCTTCCCAGGACGAAAGAAAATTGGAGTTGTAGGCAGGACAGGG AGTGGAAAATCTACTCTGGTGCAAGCCCTATTTCGAGTGGTGGAGCCTTTGGAAGGGTGCATACTCATTGATGGTGTAGA TATTTCCAAGATTGGTCTGCAAGATTTAAGATCTAAGCTTGGCATAATTCCTCAGGATCCGACCTTGTTTCTAGGTACCG TAAGGACGAACTTGGATCCTCTGGAACAACATACAGATCAAGAACTTTGGGAGGTTCTAAGCAAATGCCATCTTGCCGAA ATAGTAAAGCAAGATCCAAGGCTTCTTCATGCACCAGTGGCTGAAAATGGAGAAAATTGGAGTGTCGGACAAAGACAGCT AGTTTGCCTTGCTAGGTTGCTACTGAAGAAAAGAAAAATTTTGGTGCTTGATGAGGCAACTGCATCGATAGACACTGCAA CTGATAATTTAATTCAGAAGACTATCAGGGAAGAAACAAGCGGATGCACTGTCATTACTGTGGCACACAGAATTCCTACA GTCATTGATAATGATTTGGTGTTGGTCCTTGATGAAGGGACAATTGCTGAGTATGATCAACCATCTCAATTGTTACTGAA CAATTCTTCTTCATTCTCGAAGTTGGTTTCAGAATTTGTGAGGAGATCATCCCAAAGTAACTGCCACAAAGGATAA
Protein sequence (LotjaGi4g1v0363600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNRDFYENVLECCALHQDINLWSDGDLTLVEERGINLSGGQKQRIQLARAVYNDSDIYFLDDPFSAVDAHTATHLFKKCL LELLYDKTVVYATHQLEFLEAADLIIVLKDGKIVESGGYNDLIARPNCELVRQMAAHEEAVNHINPCQEDDSVGSRPCQK NQIEAVEENIQETIMDWKRTKEEEAMTGRVKWSVYSTFVTSAYRGALVPIILLCQVLFQVLQMGSNYWISWATEERGRVS NGELMGTFILLSGGSSIFILGRTVLMATVAVETAQRLFHGMISSLFRAPVSFFDATPSSRIMSRSSTDQSTVDTDIPFRL AGLVFALIQLLSIIILMSQAAWQVILLFFVVLAISIWYQAYYITTARELARMVGIRKAPILHHFSESIAGAATIRCFNQE QIFLTKKMALIDDYSRVAFHNYATMEWLSVRINFLFNLVFYFVLVILVTLPKSAIDPSLAGLVATYGLNLNVLQAWVIWN LCNVENKMISVERVLQFSNIPSEAPLIIEDCRPEPEWPGDGKIELHNLHVQYDPAAPMVLKGVTCVFPGRKKIGVVGRTG SGKSTLVQALFRVVEPLEGCILIDGVDISKIGLQDLRSKLGIIPQDPTLFLGTVRTNLDPLEQHTDQELWEVLSKCHLAE IVKQDPRLLHAPVAENGENWSVGQRQLVCLARLLLKKRKILVLDEATASIDTATDNLIQKTIREETSGCTVITVAHRIPT VIDNDLVLVLDEGTIAEYDQPSQLLLNNSSSFSKLVSEFVRRSSQSNCHKG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 152 | 152 | 3.6E-42 | – | |
| Phobius | 1 | 205 | 205 | - | – | |
| PANTHER | 2 | 763 | 762 | 0.0 | – | |
| PANTHER | 2 | 763 | 762 | 0.0 | – | |
| SUPERFAMILY | 3 | 126 | 124 | 2.83E-33 | ||
| Pfam | 28 | 64 | 37 | 5.4E-7 | ||
| Gene3D | 179 | 505 | 327 | 1.0E-33 | ||
| Phobius | 206 | 224 | 19 | - | – | |
| TMHMM | 207 | 229 | 23 | - | – | |
| SUPERFAMILY | 208 | 503 | 296 | 3.4E-47 | ||
| CDD | 208 | 498 | 291 | 1.48203E-83 | – | |
| ProSiteProfiles | 210 | 486 | 277 | 32.666 | ||
| Pfam | 214 | 452 | 239 | 1.1E-25 | ||
| Phobius | 225 | 243 | 19 | - | – | |
| TMHMM | 244 | 266 | 23 | - | – | |
| Phobius | 244 | 265 | 22 | - | – | |
| Phobius | 266 | 276 | 11 | - | – | |
| Phobius | 277 | 296 | 20 | - | – | |
| Phobius | 297 | 315 | 19 | - | – | |
| Phobius | 316 | 337 | 22 | - | – | |
| TMHMM | 320 | 337 | 18 | - | – | |
| Phobius | 338 | 343 | 6 | - | – | |
| TMHMM | 341 | 363 | 23 | - | – | |
| Phobius | 344 | 363 | 20 | - | – | |
| Phobius | 364 | 431 | 68 | - | – | |
| TMHMM | 427 | 449 | 23 | - | – | |
| Phobius | 432 | 450 | 19 | - | – | |
| Phobius | 451 | 458 | 8 | - | – | |
| TMHMM | 459 | 481 | 23 | - | – | |
| Phobius | 459 | 479 | 21 | - | – | |
| Phobius | 480 | 771 | 292 | - | – | |
| Gene3D | 506 | 759 | 254 | 2.4E-79 | – | |
| SUPERFAMILY | 515 | 749 | 235 | 6.62E-67 | ||
| CDD | 521 | 741 | 221 | 1.64429E-126 | – | |
| ProSiteProfiles | 523 | 757 | 235 | 16.887 | ||
| Pfam | 541 | 688 | 148 | 1.3E-29 | ||
| SMART | 549 | 732 | 184 | 1.6E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. | ||
| Molecular function | ATPase activity, coupled to transmembrane movement of substances | Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi4g1v0363600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…