Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0371600 |
| Transcript ID | LotjaGi4g1v0371600.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Serine hydroxymethyltransferase; TAIR: AT4G13930.1 serine hydroxymethyltransferase 4; Swiss-Prot: sp|O23254|GLYC4_ARATH Serine hydroxymethyltransferase 4; TrEMBL-Plants: tr|A0A1B1RUN9|A0A1B1RUN9_GLYSO Serine hydroxymethyltransferase; Found in the gene: LotjaGi4g1v0371600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:75101718..75105432) extracted from Lotus japonicus Gifu genome v1.2.
CCAGAAACCAACCACTAAGCACAGGCCACAACGGTCCATTCACACTCGAACCTCCTTCTTTTTAAACACACACACGTTCA TTCCATTTCCACCGCAACACCCTCTTCTTCCTCTTGCATTCTCATTCTCTTCTTCTTCTTCTTCCTTCAGATTCATTCTC ATTTCCAATGGATCCAGTGAAAGTATGGGGTAACACACCCCTAATCGAGGTCGACGGCGAGATCCACGACCTCATCGAGA AGGAGAAGCGCCGCCAGTGCCGCGGCATCGAGCTAATCGCATCGGAGAATTTCACCTCCTTCGCCGTCATCGAAGCTCTC GGCTCCGCCCTCACCAACAAATACTCCGAGGGCATGCCCGGTAACCGCTACTACGGCGGCAACGAGTTCATCGACCAGAT CGAGAATCTCTGCCGCTCTCGCGCGCTTCAAGCCTTCCATCTCGACGCTGCAAAATGGGGCGTTAACGTCCAGCCCTACT CCGGCTCACCGGCCAACTTCGCCGCATACACCGCCGTGCTCAACCCTCACGACCGCATCATGGGGTTGGATCTCCCCTCC GGTGGACATCTCACCCATGGGTACTATACCTCCGGCGGGAAGAAGATCTCTGCGACTTCGATTTACTTTGAGAGTCTTCC GTATAAGGTGAACTCCACCACCGGGTACATTGATTACGATCGGTTGGAGGAGAAGGCGTTGGATTTCAGGCCTAAGTTGA TTATCTGCGGTGGCAGTGCTTACCCTAGGGATTGGGATTACAGACGCTTCAGGGAGGTTGCTGACAAGTGTGGCGCGCTT TTGCTCTGTGATATGGCGCACATTAGTGGCCTTGTTGCTGCTCAGGTATAATCGAATTCAATCTGATCCATTAACATTCA TGCTTAGAAATGAATCTGCATTTCTGGATCTTATTTTGACATGGATGAGCTAACATGATTGTGTTTTGTATGCTGGTTTT CTTGGGATTTTTTCTACTTTGATTGACATGAAATTTTGAGATTCATAGCATGTTTGGTTATATATGAAATGCTCTAGAAT CAATTGGGTTAGAAGTTACTAATATTAGCTTTTGAGTGTAGGCGCATTGGATTATGTGCTAATCGCGAAACCAAATGTTA TTAGATTGATAATTTTTCTAGTGTCCTGCTAACTAGTGCAGATTTGAATGAAGAAATGAAAATTATTTGTTGGTTTACTG TTGAATTTGTCTTGCACTGAGAATGCAGTGTTTTTTTTATGAATACTTGCTATTTTTGCAATTTAAACTGGGTGCTCTTG GGATACTTTTTACAATTTTTTTATAAGGGATTATTTGAATAAGGGCCTTGTTATGTACATTAGGTAAATCCAATCCCTGA ACCTCTTGAATTTACATGTATTAATGGACACATCAAGAAATGCAGCATTGACACACTGTTAATAGATTGTACTACTTGTT AATAAATACTTGTTACTTTTAATTCCATAATTATTTCAGTGCCCTTTGAGTTAGGGGTTAGGACACACACTTTTAATAGA TTACTTTCAATGTTTACCTTGGTGATGTAGGAATTTATCGAAGTACATTTTCATTATGCCTTAGAGTTTGTTGACAGTAA CAACTAACAAGGCTTGTTTTTTTGGTATGGTATGGATGATTGATTTTTTTTTCTGTCTACAGGAAGTTAATGATCCCTTT GAGTACTGTGACATAGTCACAACAACCACCCACAAAAGCTTGAGGGGACCTAGGGCTGGTATGATCTTCTACCGGAAGGG ACCTAAACCAGCCAAGAAGGGCCAGCCCGAGGGTGCAGTTTACGAGTTTGAGGACAAAATCAACTTTGCAGTCTTCCCCT CCCTTCAGGGTGGTCCTCACAATCACCAGATTGGTGCCCTTGCTGTCGCTTTGAAACAGTCCATGACACCTGGGTTCAAG GCATATGCCAAGCAAGTTAAGGCCAATGCAGTTGCCATTGGAAATTACTTGATGAGCAAAGGATACAGTCTTGTCACCAG TGGAACTGAGAACCACCTTGTCTTGTGGGATCTCCGGCCTCTTGGATTGACCGGTAAAGGATACGTCACACATAAATTTA ACTGGAAAATTAATAAAATTTGTTTGAACACATAAAAACTGATTTCATCATTGCTTGATGTTCTTGCAGGCAATAAGGTG GAGAAACTTTGTGACCTCTGTAGCATTACAGTGAACAAAAATGCTGTTTTTGGTGATAGCAGTGCCTTGGCTCCTGGAGG AGTTCGAGTTGGTAAGATATTCTCTATGAGCTTGACTTTGTTATGTATGTAGTCTTGTGATGTATTGATCGGATCATCAG AAGGTATAGCATCTTAAAAGTAGATCATTATTGGAAGAATTTCATTGAGTATGTTTTTAGAATTTTAGTGCTCTACCAAA GGTGTATTAGCCTCTAGAGTATGCAAGCAGGACTAGATAAATATTTGGGAACAGAAAATACGTGGCTTCAATTCATTTTG CACGAGTACTTGACTGGAGTTTTTGTTAACAGGTGCTCCAGCCATGACCTCTAGAGGCTTGGTTGAGAAGGACTTTGAGC AGATTGGAGAGTTCCTCCACCGTGCTGTGACTCTCACACTCGACATCCAGAAGGAGTATGGCAAACTTCTGAAGGATTTT AACAAGGGCTTGGTGAACAACAAGGCTCTTGAAGATCTCAAGGCTGATGTTGAGAAGTTCTCTTCCTCATTTGACATGCC TGGATTCCTGATGTCTGAGATGAAGTACCAGGATTAGATTAAATCATATAACTTTGCACTCGAAGTTCTGAGACAAGGAT GGAGATAAAGAAAAAGAGTGTCTTCCTTTGTTTGGGTGTGATAGGTTTATGGTATTTCAATTCAAAAATTTGAAGTTTTT AATACCTTTTTTTCCTGTTTCTGTTAGCCTGATATGATATTCTTGTTATCCAACAATTGAAATAATACACGTATTATTTT TCTTTTCCTCATAAGGGAGTGTGTCTCGTCATGATTTTACTCAAAGAACTTGCGACTAGGAATTAAATTTAGCTGAGATA ACATGCGAAAGTAATTATTGTCATTTGAGGTCTTTATTTCTCGTAGGTAACACGCCTACTACTGTCTGTCTATTGGACTA TGCTATCAAAATCTAGCGTCTGTCTCATGCTTTAATGTCTACCCTCGCAAAAGGAAACAAAGGAACGCTGTAGCTAGGGG TGGTAATATGGGTTGGCGGTTGGCGGGCCGGGTTGGGCCCAACCCGCCACTAATCCGTCGAAATGCGGGTTGGGTTGGGC TAGCCCACTTTTGGTATTTGGGTTCAAAGTCTCAACCCAACCCATATTTGACGGAAAAACGGGTTGGTGGGCTAGCCCCA CTTAGAAAATGTAGTGAAATAAAAAAAGAAATGCAATGAGAAATTTTAAGCAATCTTTCACTTTTTATATGTTGACACAT GAAAAAAGTAGAATTATACTTGTTCTTTATCTTTAAATGTTATAAGTTCAACTAGAAAGTCTCACCAATAGCAATAACAA AAAAATATTTATCATGTGTGGTTATTAAAAGTTGTAAAACTGTAACCTCACTAGCAACAAGAGTTTACTTTAGCCAATAA TAGTCAATCAACAATTATAAAATATAATGTCGAGTAGTCATGAAAGTTTTAGACAAAACATAACCTACGAATAAGAGCAG CAGCTTATATAGGTGAATCCATTGAAGGGAGTTTT
CDS sequence (LotjaGi4g1v0371600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATCCAGTGAAAGTATGGGGTAACACACCCCTAATCGAGGTCGACGGCGAGATCCACGACCTCATCGAGAAGGAGAA GCGCCGCCAGTGCCGCGGCATCGAGCTAATCGCATCGGAGAATTTCACCTCCTTCGCCGTCATCGAAGCTCTCGGCTCCG CCCTCACCAACAAATACTCCGAGGGCATGCCCGGTAACCGCTACTACGGCGGCAACGAGTTCATCGACCAGATCGAGAAT CTCTGCCGCTCTCGCGCGCTTCAAGCCTTCCATCTCGACGCTGCAAAATGGGGCGTTAACGTCCAGCCCTACTCCGGCTC ACCGGCCAACTTCGCCGCATACACCGCCGTGCTCAACCCTCACGACCGCATCATGGGGTTGGATCTCCCCTCCGGTGGAC ATCTCACCCATGGGTACTATACCTCCGGCGGGAAGAAGATCTCTGCGACTTCGATTTACTTTGAGAGTCTTCCGTATAAG GTGAACTCCACCACCGGGTACATTGATTACGATCGGTTGGAGGAGAAGGCGTTGGATTTCAGGCCTAAGTTGATTATCTG CGGTGGCAGTGCTTACCCTAGGGATTGGGATTACAGACGCTTCAGGGAGGTTGCTGACAAGTGTGGCGCGCTTTTGCTCT GTGATATGGCGCACATTAGTGGCCTTGTTGCTGCTCAGGAAGTTAATGATCCCTTTGAGTACTGTGACATAGTCACAACA ACCACCCACAAAAGCTTGAGGGGACCTAGGGCTGGTATGATCTTCTACCGGAAGGGACCTAAACCAGCCAAGAAGGGCCA GCCCGAGGGTGCAGTTTACGAGTTTGAGGACAAAATCAACTTTGCAGTCTTCCCCTCCCTTCAGGGTGGTCCTCACAATC ACCAGATTGGTGCCCTTGCTGTCGCTTTGAAACAGTCCATGACACCTGGGTTCAAGGCATATGCCAAGCAAGTTAAGGCC AATGCAGTTGCCATTGGAAATTACTTGATGAGCAAAGGATACAGTCTTGTCACCAGTGGAACTGAGAACCACCTTGTCTT GTGGGATCTCCGGCCTCTTGGATTGACCGGCAATAAGGTGGAGAAACTTTGTGACCTCTGTAGCATTACAGTGAACAAAA ATGCTGTTTTTGGTGATAGCAGTGCCTTGGCTCCTGGAGGAGTTCGAGTTGGTGCTCCAGCCATGACCTCTAGAGGCTTG GTTGAGAAGGACTTTGAGCAGATTGGAGAGTTCCTCCACCGTGCTGTGACTCTCACACTCGACATCCAGAAGGAGTATGG CAAACTTCTGAAGGATTTTAACAAGGGCTTGGTGAACAACAAGGCTCTTGAAGATCTCAAGGCTGATGTTGAGAAGTTCT CTTCCTCATTTGACATGCCTGGATTCCTGATGTCTGAGATGAAGTACCAGGATTAG
Protein sequence (LotjaGi4g1v0371600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDPVKVWGNTPLIEVDGEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDQIEN LCRSRALQAFHLDAAKWGVNVQPYSGSPANFAAYTAVLNPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYK VNSTTGYIDYDRLEEKALDFRPKLIICGGSAYPRDWDYRRFREVADKCGALLLCDMAHISGLVAAQEVNDPFEYCDIVTT TTHKSLRGPRAGMIFYRKGPKPAKKGQPEGAVYEFEDKINFAVFPSLQGGPHNHQIGALAVALKQSMTPGFKAYAKQVKA NAVAIGNYLMSKGYSLVTSGTENHLVLWDLRPLGLTGNKVEKLCDLCSITVNKNAVFGDSSALAPGGVRVGAPAMTSRGL VEKDFEQIGEFLHRAVTLTLDIQKEYGKLLKDFNKGLVNNKALEDLKADVEKFSSSFDMPGFLMSEMKYQD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 471 | 471 | 0.0 | – | |
| PANTHER | 1 | 471 | 471 | 0.0 | ||
| PIRSF | 1 | 466 | 466 | 3.5E-185 | ||
| SUPERFAMILY | 7 | 463 | 457 | 1.44E-176 | ||
| Hamap | 11 | 461 | 451 | 41.867 | ||
| Pfam | 14 | 411 | 398 | 5.0E-185 | ||
| CDD | 14 | 424 | 411 | 0.0 | ||
| Gene3D | 16 | 460 | 445 | 4.0E-211 | ||
| Gene3D | 41 | 316 | 276 | 4.0E-211 | ||
| ProSitePatterns | 236 | 252 | 17 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Glycine hydroxymethyltransferase activity | Catalysis of the reaction: 5,10-methylenetetrahydrofolate + glycine + H2O = tetrahydrofolate + L-serine. | ||
| Biological process | Glycine biosynthetic process from serine | The chemical reactions and pathways resulting in the formation of glycine from other compounds, including serine. | ||
| Molecular function | Pyridoxal phosphate binding | Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6. | ||
| Biological process | Tetrahydrofolate interconversion | The chemical reactions and pathways by which one-carbon (C1) units are transferred between tetrahydrofolate molecules, to synthesise other tetrahydrofolate molecules. |
Expression pattern of LotjaGi4g1v0371600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…