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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0376600 |
| Transcript ID | LotjaGi4g1v0376600.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Importin-5; TAIR: AT5G19820.1 ARM repeat superfamily protein; Swiss-Prot: sp|O74476|IMB3_SCHPO Importin subunit beta-3; TrEMBL-Plants: tr|A0A151TKV1|A0A151TKV1_CAJCA Importin-5; Found in the gene: LotjaGi4g1v0376600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:75563920..75565318) extracted from Lotus japonicus Gifu genome v1.2.
ATGGTAAAAAATTTGGAGCAAGTGGTGGCTATGGTACTGAACTCATTTCCAGATCAACATCCCCGTGTAAGATGGGCAGC AATCAATGCAATTGGGCAACTCTCCACTGATTTGGGTCCAGATTTGCAAGTTAAATACCATCAAGGGGTGTTGCCAGCAC TAGCTTCTGCCATGGATGATTTTCAAAACCCTCGTGTGCAGGTTAGCTGCCCTTATTAATTTTAATTGGTCTATGGGTTT TCCTACAATGATCAAATGAAAGCATTGGGTTAAGTTAATGATTTAAACTTCAATGGAAAATGTGAGCAGTTATTGCTATA AAACTTCACACAAATATGAACTATTTAACTGTAACATTGATAACGAGCATTAGTCTGCGTATGTTATAGTTGGTTGAGGA TAGAGTATATGATAATATGGTGTCAGTGTTCAACCTATCAATTGAGTTTTTTAGTCATCTTTGTTTATTTTATTCATCAT AGTCTGTCAGATTTGTGAATGTTGTACTTCAAGTTATCTTATTTCAATTAAATATGCTTCATAGTACAAACGTTTTTGTG ATTTGTTTACACAGGCACATGCTGCTTCTGCAGTGCTCAACTTCACTGAGAATTGTACGCCTGATATTTTAACACCATAT TTGGATGGAATTGTTAGTAAATTGCTTGTACTCCTTCAGGTATGGTTATGTAATATTATTCTCAATTGTAATGTTATTAT GGTCGTTTGGCTTAATCATCATATGATTTCATTTTCCTTCATTTAGTTTTGGATATTTATGTGTTTCAGAATGGTAAGCA AATGGTGCAAGAGGGTGCTTTAACTGCTTTGGCATCAGTTGCTGATTCATCTCAGGTATTCTACACAAAGTTATAATCTG CATTCTTCAGCCTCTATAATTTATTTTCTTCAGATCACTCAATCAATACTATGGCCATCCTCAGGAACACTTCCAAAAAT ACTATGATGCCGTCATGCCATATCTTAAGGCTATATTGGTGAATGCAACTGATAAGTCTAACCGTATGCTTCGTGCCAAA TCTATGGAGTGCATAAGTTTGGTTGGAATGGCTGTTGGGAAGGAGAAGTTCCGGGCTGATGCTAAACAGGTTGGTAGTTA TTGGTTCTGGGTCGAGTTTATTTTCTGTTAAGTACTTCTGTTTCTCTTGTCAGCTAGATCTCTGATCCCCTGCATATTCT GGTTCTTTACTAGGTCATGGAAGTTCTCATGTCCCTGCAAGTATCTCAAATGGAGACCGATGATCCAACAACAAGTTACA TGCTACAGGTAGGCTTTTTATTTTACTGATAGCTTGTACATAAAGTGCCAATTGGACTATGGTCTGTCTCAACAATTTTA ATTTGTCACAGGCATGGGCTAGACTCTGCAAGTGTCTAG
CDS sequence (LotjaGi4g1v0376600.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTAAAAAATTTGGAGCAAGTGGTGGCTATGGTACTGAACTCATTTCCAGATCAACATCCCCGTGTAAGATGGGCAGC AATCAATGCAATTGGGCAACTCTCCACTGATTTGGGTCCAGATTTGCAAGTTAAATACCATCAAGGGGTGTTGCCAGCAC TAGCTTCTGCCATGGATGATTTTCAAAACCCTCGTGTGCAGGCACATGCTGCTTCTGCAGTGCTCAACTTCACTGAGAAT TGTACGCCTGATATTTTAACACCATATTTGGATGGAATTGTTAGTAAATTGCTTTCTAACCGTATGCTTCGTGCCAAATC TATGGAGTGCATAAGTTTGGTTGGAATGGCTGTTGGGAAGGAGAAGTTCCGGGCTGATGCTAAACAGGTCATGGAAGTTC TCATGTCCCTGCAAGTATCTCAAATGGAGACCGATGATCCAACAACAAGCATGGGCTAG
Protein sequence (LotjaGi4g1v0376600.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVKNLEQVVAMVLNSFPDQHPRVRWAAINAIGQLSTDLGPDLQVKYHQGVLPALASAMDDFQNPRVQAHAASAVLNFTEN CTPDILTPYLDGIVSKLLSNRMLRAKSMECISLVGMAVGKEKFRADAKQVMEVLMSLQVSQMETDDPTTSMG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 98 | 98 | 2.1E-71 | – | |
| Gene3D | 1 | 98 | 98 | 1.8E-41 | ||
| PANTHER | 1 | 98 | 98 | 2.1E-71 | ||
| SUPERFAMILY | 3 | 145 | 143 | 5.35E-26 | ||
| ProSiteProfiles | 8 | 46 | 39 | 9.225 | ||
| Pfam | 17 | 74 | 58 | 2.4E-6 | – | |
| PANTHER | 99 | 150 | 52 | 2.1E-71 | – | |
| Gene3D | 99 | 151 | 53 | 3.1E-17 | ||
| PANTHER | 99 | 150 | 52 | 2.1E-71 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Protein import into nucleus | The directed movement of a protein from the cytoplasm to the nucleus. |
Expression pattern of LotjaGi4g1v0376600.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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