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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR021133
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 81 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 6.474s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0006439.1
n.a. PREDICTED: protein VAC14 homolog [Cicer arietinum] gi|502123772|ref|XP_004498253.1| chr0 2476011 2487918 -
2 domain predictions
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Lj0g3v0108539.1
n.a. PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog [Glycine max] gi|356513973|ref|XP_003525682.1| chr0 46951852 46952440 +
2 domain predictions
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Lj0g3v0108549.1
n.a. PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468-like [Cicer arietinum] gi|502090691|ref|XP_004489310.1| chr0 46952872 46955543 +
2 domain predictions
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Lj0g3v0108549.2
n.a. PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468-like [Cicer arietinum] gi|502090691|ref|XP_004489310.1| chr0 46952872 46955543 +
2 domain predictions
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Lj1g3v3278880.1
n.a. PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog [Glycine max] gi|356499610|ref|XP_003518631.1| chr1 36872559 36881770 +
2 domain predictions
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Lj1g3v3278880.2
n.a. PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog [Glycine max] gi|356499610|ref|XP_003518631.1| chr1 36872559 36881770 +
2 domain predictions
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Lj1g3v3975340.1
n.a. PREDICTED: importin-5-like isoform X2 [Cicer arietinum] gi|502107149|ref|XP_004493173.1| chr1 46819765 46831546 -
2 domain predictions
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Lj1g3v3975340.2
n.a. PREDICTED: importin-5-like isoform X2 [Cicer arietinum] gi|502107149|ref|XP_004493173.1| chr1 46825148 46831546 -
2 domain predictions
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Lj1g3v5020850.1
n.a. PREDICTED: LOW QUALITY PROTEIN: translational activator GCN1-like [Cicer arietinum] gi|502113779|ref|XP_004494756.1| chr1 61091706 61117409 -
2 domain predictions
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Lj2g3v0742070.1
n.a. PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like [Glycine max] gi|356520585|ref|XP_003528942.1| chr2 11733369 11742399 +
2 domain predictions
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Lj2g3v0878940.1
n.a. PREDICTED: phosphoinositide 3-kinase regulatory subunit 4-like [Glycine max] gi|356497575|ref|XP_003517635.1| chr2 13503623 13511160 -
2 domain predictions
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Lj2g3v1155670.1
n.a. PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like [Glycine max] gi|356499699|ref|XP_003518674.1| chr2 18333487 18339185 +
2 domain predictions
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Lj4g3v2604270.1
n.a. PREDICTED: importin-5-like isoform X2 [Cicer arietinum] gi|502140730|ref|XP_004504314.1| chr4 35157273 35165829 +
2 domain predictions
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Lj4g3v3113090.1
n.a. PREDICTED: protein VAC14 homolog [Glycine max] gi|356524533|ref|XP_003530883.1| chr4 41564051 41571400 -
2 domain predictions
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Lj5g3v1290160.1
n.a. PREDICTED: probable inactive serine/threonine-protein kinase scy1-like [Glycine max] gi|356576646|ref|XP_003556441.1| chr5 20238985 20252133 +
2 domain predictions
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Lj5g3v1794730.1
n.a. PREDICTED: protein MOR1-like [Glycine max] gi|356533943|ref|XP_003535517.1| chr5 25594741 25607633 -
2 domain predictions
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Lj5g3v2217170.1
n.a. PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like isoform X1 [Cicer arietinum] gi|502120866|ref|XP_004497109.1| chr5 31915139 31921893 +
2 domain predictions
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Lj5g3v2240860.3
n.a. PREDICTED: tubulin-specific chaperone D-like [Glycine max] gi|356534400|ref|XP_003535743.1| chr5 32199508 32210374 +
2 domain predictions
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Lj6g3v2274460.1
n.a. PREDICTED: probable importin subunit beta-4-like [Glycine max] gi|356558485|ref|XP_003547537.1| chr6 26460405 26467503 -
2 domain predictions
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LotjaGi1g1v0546300.2
n.a. LisH domain and HEAT repeat-containing protein KIAA1468-like protein; TAIR: AT5G16210.1 HEAT repeat-containing protein; Swiss-Prot: sp|Q9P260|K1468_HUMAN LisH domain and HEAT repeat-containing protein KIAA1468; TrEMBL-Plants: tr|K7K780|K7K780_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0546300 LjG1.1_chr1 107600802 107611282 +
2 domain predictions
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LotjaGi1g1v0546300.5
n.a. LisH domain and HEAT repeat-containing protein KIAA1468-like protein; TAIR: AT5G16210.1 HEAT repeat-containing protein; Swiss-Prot: sp|Q9P260|K1468_HUMAN LisH domain and HEAT repeat-containing protein KIAA1468; TrEMBL-Plants: tr|K7K780|K7K780_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0546300 LjG1.1_chr1 107600959 107610823 +
2 domain predictions
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LotjaGi1g1v0546300.6
n.a. LisH domain and HEAT repeat-containing protein KIAA1468-like protein; TAIR: AT5G16210.1 HEAT repeat-containing protein; Swiss-Prot: sp|Q9P260|K1468_HUMAN LisH domain and HEAT repeat-containing protein KIAA1468; TrEMBL-Plants: tr|K7K780|K7K780_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0546300 LjG1.1_chr1 107600959 107610823 +
2 domain predictions
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LotjaGi1g1v0546300.7
n.a. LisH domain and HEAT repeat KIAA1468-like protein; TAIR: AT5G16210.1 HEAT repeat-containing protein; Swiss-Prot: sp|Q08BT5|K1468_XENTR LisH domain and HEAT repeat-containing protein KIAA1468 homolog; TrEMBL-Plants: tr|K7K780|K7K780_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0546300 LjG1.1_chr1 107607445 107609498 +
2 domain predictions
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LotjaGi1g1v0643800.1
n.a. Importin-5; TAIR: AT5G19820.1 ARM repeat superfamily protein; Swiss-Prot: sp|O00410|IPO5_HUMAN Importin-5; TrEMBL-Plants: tr|A5XEM2|A5XEM2_MEDTR Importin beta-3, putative; Found in the gene: LotjaGi1g1v0643800 LjG1.1_chr1 120112733 120124670 -
2 domain predictions
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LotjaGi1g1v0700900.1
n.a. CLIP-associating-like protein; TAIR: AT2G20190.1 CLIP-associated protein; Swiss-Prot: sp|Q8RWY6|CLASP_ARATH CLIP-associated protein; TrEMBL-Plants: tr|I1JPB4|I1JPB4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0700900 LjG1.1_chr1 126892954 126910972 -
2 domain predictions
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LotjaGi1g1v0700900.2
n.a. CLIP-associating-like protein; TAIR: AT2G20190.1 CLIP-associated protein; Swiss-Prot: sp|Q8RWY6|CLASP_ARATH CLIP-associated protein; TrEMBL-Plants: tr|I1JPB4|I1JPB4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0700900 LjG1.1_chr1 126892954 126910972 -
2 domain predictions
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LotjaGi1g1v0700900.3
n.a. CLIP-associating-like protein; TAIR: AT2G20190.1 CLIP-associated protein; Swiss-Prot: sp|Q8RWY6|CLASP_ARATH CLIP-associated protein; TrEMBL-Plants: tr|I1JPB4|I1JPB4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0700900 LjG1.1_chr1 126893119 126910062 -
2 domain predictions
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LotjaGi1g1v0786800.1
n.a. Translational activator GCN1; TAIR: AT1G64790.1 ILITYHIA; Swiss-Prot: sp|F4I893|ILA_ARATH Protein ILITYHIA; TrEMBL-Plants: tr|I1JRU2|I1JRU2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0786800 LjG1.1_chr1 135899121 135927731 -
2 domain predictions
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LotjaGi1g1v0786800.2
n.a. Translational activator GCN1; TAIR: AT1G64790.2 ILITYHIA; Swiss-Prot: sp|F4I893|ILA_ARATH Protein ILITYHIA; TrEMBL-Plants: tr|I1JRU2|I1JRU2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0786800 LjG1.1_chr1 135901860 135927489 -
2 domain predictions
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LotjaGi1g1v0786800.3
n.a. Translational activator GCN1; TAIR: AT1G64790.2 ILITYHIA; Swiss-Prot: sp|F4I893|ILA_ARATH Protein ILITYHIA; TrEMBL-Plants: tr|I1JRU2|I1JRU2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0786800 LjG1.1_chr1 135901860 135927489 -
2 domain predictions
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LotjaGi1g1v0786800.4
n.a. Translational activator GCN1; TAIR: AT1G64790.1 ILITYHIA; Swiss-Prot: sp|F4I893|ILA_ARATH Protein ILITYHIA; TrEMBL-Plants: tr|I1JRU2|I1JRU2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0786800 LjG1.1_chr1 135901860 135927489 -
2 domain predictions
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LotjaGi1g1v0786800.5
n.a. Translational activator GCN1; TAIR: AT1G64790.1 ILITYHIA; Swiss-Prot: sp|F4I893|ILA_ARATH Protein ILITYHIA; TrEMBL-Plants: tr|I1JRU2|I1JRU2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0786800 LjG1.1_chr1 135901860 135927489 -
2 domain predictions
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LotjaGi1g1v0786800.6
n.a. Translational activator GCN1; TAIR: AT1G64790.1 ILITYHIA; Swiss-Prot: sp|F4I893|ILA_ARATH Protein ILITYHIA; TrEMBL-Plants: tr|I1JRU2|I1JRU2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0786800 LjG1.1_chr1 135901860 135927492 -
2 domain predictions
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LotjaGi2g1v0071300.1
n.a. VAC14-like protein; TAIR: AT2G01690.1 ARM repeat superfamily protein; Swiss-Prot: sp|Q9ZU97|VAC14_ARATH Protein VAC14 homolog; TrEMBL-Plants: tr|A0A072VR25|A0A072VR25_MEDTR VAC14-like protein; Found in the gene: LotjaGi2g1v0071300 LjG1.1_chr2 17548365 17560860 -
2 domain predictions
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LotjaGi2g1v0071300.2
n.a. VAC14-like protein; TAIR: AT2G01690.1 ARM repeat superfamily protein; Swiss-Prot: sp|Q9ZU97|VAC14_ARATH Protein VAC14 homolog; TrEMBL-Plants: tr|A0A072VR25|A0A072VR25_MEDTR VAC14-like protein; Found in the gene: LotjaGi2g1v0071300 LjG1.1_chr2 17549215 17560438 -
2 domain predictions
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LotjaGi2g1v0071300.3
n.a. VAC14-like protein; TAIR: AT2G01690.1 ARM repeat superfamily protein; Swiss-Prot: sp|Q9ZU97|VAC14_ARATH Protein VAC14 homolog; TrEMBL-Plants: tr|A0A072VR25|A0A072VR25_MEDTR VAC14-like protein; Found in the gene: LotjaGi2g1v0071300 LjG1.1_chr2 17549215 17560438 -
2 domain predictions
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LotjaGi2g1v0071300.4
n.a. VAC14-like protein; TAIR: AT2G01690.1 ARM repeat superfamily protein; Swiss-Prot: sp|Q9ZU97|VAC14_ARATH Protein VAC14 homolog; TrEMBL-Plants: tr|A0A072VR25|A0A072VR25_MEDTR VAC14-like protein; Found in the gene: LotjaGi2g1v0071300 LjG1.1_chr2 17549471 17560438 -
2 domain predictions
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LotjaGi2g1v0210500.1
n.a. Serine/threonine protein phosphatase 2A regulatory subunit A; TAIR: AT3G25800.1 protein phosphatase 2A subunit A2; Swiss-Prot: sp|Q38950|2AAB_ARATH Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform; TrEMBL-Plants: tr|A0A0L9VHW8|A0A0L9VHW8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0210500 LjG1.1_chr2 65756005 65764457 +
2 domain predictions
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LotjaGi2g1v0210500.2
n.a. Serine/threonine protein phosphatase 2A regulatory subunit A; TAIR: AT3G25800.1 protein phosphatase 2A subunit A2; Swiss-Prot: sp|Q38950|2AAB_ARATH Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform; TrEMBL-Plants: tr|A0A0L9VHW8|A0A0L9VHW8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0210500 LjG1.1_chr2 65756422 65763590 +
2 domain predictions
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LotjaGi2g1v0210500.3
n.a. Serine/threonine protein phosphatase 2A regulatory subunit A; TAIR: AT3G25800.1 protein phosphatase 2A subunit A2; Swiss-Prot: sp|Q38950|2AAB_ARATH Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform; TrEMBL-Plants: tr|A0A0L9VHW8|A0A0L9VHW8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0210500 LjG1.1_chr2 65756425 65762988 +
2 domain predictions
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LotjaGi2g1v0210500.4
n.a. Serine/threonine protein phosphatase 2A regulatory subunit A; TAIR: AT3G25800.1 protein phosphatase 2A subunit A2; Swiss-Prot: sp|Q38950|2AAB_ARATH Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform; TrEMBL-Plants: tr|A0A0L9VHW8|A0A0L9VHW8_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0210500 LjG1.1_chr2 65756431 65763590 +
2 domain predictions
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LotjaGi2g1v0226200.1
n.a. Kinase family protein; TAIR: AT4G29380.1 protein kinase family protein / WD-40 repeat family protein; Swiss-Prot: sp|Q54S77|VPS15_DICDI Probable serine/threonine-protein kinase vps15; TrEMBL-Plants: tr|I1KJQ8|I1KJQ8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0226200 LjG1.1_chr2 68334682 68343082 -
2 domain predictions
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LotjaGi2g1v0226200.2
n.a. WD repeat-containing protein 3; TAIR: AT4G29380.2 protein kinase family protein / WD-40 repeat family protein; Swiss-Prot: sp|Q54S77|VPS15_DICDI Probable serine/threonine-protein kinase vps15; TrEMBL-Plants: tr|A0A0B2PYS8|A0A0B2PYS8_GLYSO Putative serine/threonine-protein kinase vps15; Found in the gene: LotjaGi2g1v0226200 LjG1.1_chr2 68335462 68339918 -
2 domain predictions
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LotjaGi2g1v0226200.3
n.a. Kinase family protein; TAIR: AT4G29380.1 protein kinase family protein / WD-40 repeat family protein; Swiss-Prot: sp|Q54S77|VPS15_DICDI Probable serine/threonine-protein kinase vps15; TrEMBL-Plants: tr|I1KJQ8|I1KJQ8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0226200 LjG1.1_chr2 68335462 68342771 -
2 domain predictions
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LotjaGi2g1v0238400.1
n.a. LisH domain and HEAT repeat KIAA1468-like protein; TAIR: AT5G16210.1 HEAT repeat-containing protein; Swiss-Prot: sp|Q148V7|K1468_MOUSE LisH domain and HEAT repeat-containing protein KIAA1468; TrEMBL-Plants: tr|I1K1M8|I1K1M8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0238400 LjG1.1_chr2 69903242 69912198 +
2 domain predictions
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LotjaGi2g1v0278900.1
n.a. Serine/threonine protein phosphatase 2A regulatory subunit A; TAIR: AT3G25800.1 protein phosphatase 2A subunit A2; Swiss-Prot: sp|Q38950|2AAB_ARATH Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform; TrEMBL-Plants: tr|V7C7V5|V7C7V5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0278900 LjG1.1_chr2 75033918 75040553 +
2 domain predictions
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LotjaGi2g1v0278900.2
n.a. Serine/threonine protein phosphatase 2A regulatory subunit A; TAIR: AT3G25800.1 protein phosphatase 2A subunit A2; Swiss-Prot: sp|Q38950|2AAB_ARATH Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform; TrEMBL-Plants: tr|V7C7V5|V7C7V5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0278900 LjG1.1_chr2 75034447 75039764 +
2 domain predictions
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LotjaGi2g1v0278900.3
n.a. Serine/threonine protein phosphatase 2A regulatory subunit A; TAIR: AT3G25800.2 protein phosphatase 2A subunit A2; Swiss-Prot: sp|Q38950|2AAB_ARATH Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform; TrEMBL-Plants: tr|V7C7V5|V7C7V5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0278900 LjG1.1_chr2 75034450 75039345 +
2 domain predictions
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LotjaGi2g1v0278900.4
n.a. Serine/threonine protein phosphatase 2A regulatory subunit A; TAIR: AT3G25800.1 protein phosphatase 2A subunit A2; Swiss-Prot: sp|Q38950|2AAB_ARATH Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform; TrEMBL-Plants: tr|V7C7V5|V7C7V5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0278900 LjG1.1_chr2 75034456 75039764 +
2 domain predictions
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LotjaGi2g1v0311800.1
n.a. Microtubule-associated protein TORTIFOLIA1; TAIR: AT1G27210.1 ARM repeat superfamily protein; Swiss-Prot: sp|Q93ZH1|TORL4_ARATH TORTIFOLIA1-like protein 4; TrEMBL-Plants: tr|G7K6Y7|G7K6Y7_MEDTR Microtubule-associated TORTIFOLIA-like protein; Found in the gene: LotjaGi2g1v0311800 LjG1.1_chr2 78606651 78610885 +
2 domain predictions
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