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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0377000 |
| Transcript ID | LotjaGi4g1v0377000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT5G44230.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9FFG8|PP417_ARATH Pentatricopeptide repeat-containing protein At5g44230; TrEMBL-Plants: tr|G7LIP3|G7LIP3_MEDTR Pentatricopeptide (PPR) repeat protein; Found in the gene: LotjaGi4g1v0377000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:75599005..75606098) extracted from Lotus japonicus Gifu genome v1.2.
CTCATGTTTTCTCTTTTTTACTTTTTCTTTTCTTCGTTCCACCTCATTCCACGTTCAAAAAAAAAAGAGTGTGAATAAAA CATTATTGGATATTTTTGGTTTTGTGCCAATTTCTTCTTATGATTCATTTAGAAAAAGAATCGATCAACTGCTGCAACAG GTGAAGCAACAGCAGAAGAGGAAGAAGGACATGGTTGGTGAGCGAAGGGCTTTGGAGTGGCAAGTGGTGAGTATTCTCAA CACTTGCACCACCCTCCGCCGCGCCAAACAACTCCACGCCCACATCTACCGCCACAACCTCCACCAATCCTCCTACATCA TCACCAACCTCCTCCGCCACCTCACCACCACCTTCCCCCACCTCCCCATCCACTCCTACCCTCGCCTCCTCTTCTCCCAG GTCCCTTCCCCCAACCCCTTCCTCTACTCCGCCCTCATCCGCGCCTACACCCTCCGAGGACCCTTCACCGAAGCCCTTCG CTTATACACGTCCATGAGAAACCAACGCATCACCCCCATCTCCTTCACCTTCTCCGCTCTCTTCTCCGCCGTCACAAACC TCACGTTGGGAACCCAGCTCCATGCACATGCCCTCTTGCTTGGCTTTGCCTCTGATATCTTCGTCAACAATACAATGATC AAAATGTACGTGAAGTCCGGGTGTTTGGACTCCGCGCGCAAGGTGTTCGATGAAATGCCTCAACGGGATGTTGTTTCATG GACTGAGTTGATTACTGCGTATGCCAGGAATGGTGACATGAATTCCGCGCGCGAGTTGTTTGATGAGTTGGATGTGAAGG ATAAGGTGGCTTGGACTGCCATGGTTACTGGGTATGCTCAGAATGCCATGCCGAAGGAGGCGTTGGAGTTTTTTCGGTGC TTGCGGGAGGCGGGTATGGAGACTGATGAGGTTACATTGGCTGGTGCGATTTCTGCTTGTGCTCAATTGGGTGCGTCGAA GGATGCTGACTGGGTGAGGTGCATTGCTGAGAGTTCTGGGTTTGGGCCTGCTCGTAATGTTCTTGTGGGATCGGCGCTGG TGGATATGTACTCTAAATGTGGGAATGTGGAGGAGGCGTATAATGTGTTTAGGGGAATGAAGGAAAGGAATGCTTTTACT TACAGTTCCATGATTGTGGGATTTGCAATTCATGGCCGTGCTCGTGCTGCGATTAAGTTGTTTTATGAGATGTTAGAGAC TGAGATAAAACCGAACCATGTTACTTTTGTAGGGGTGCTTGTGGCTTGCACTCATGCAGGCTTGGTAGACCAAGGTCAGT ACCTCTTTAGTAACATGGAAGGATGTTATGGTGTTGTTCCCTCTGCAGATCATTATGCTTGCATGGCAGATCTTCTTGGT CGAGCTGGGCACTTAGAGAAGGCACTTCAGCTTGTTGAGACAATGCCTGTGGAGCCTAACGGTGCTGTCTGGGGAGCACT TCTTGGAGCATCACACGTTCATGGGAACCCTGATGTTGCTGAAATTGTGTCTAGACATTTGTTTGAGCTTGAGCCTAATA ACATAGGAAACTATTTATTGCTTTCTAACACGTATGCATCGGCTGGAAGATGGGATGATGTGTCAAGGGTCAGGAAATTG ATGAGAGATAAAAATTTGAAGAAGAATCCAGGATATAGTTGGGTTGAATCAAGAAATGGTGTGATTCATGAGTTCTTAGC AGGTGATGTGAAACATCCAGAAATTAATGAGATTAAGAAGGCATTAGACGATCTTTTGGAACGACTGAAGGCTATTGGGT ACCTACCAAACCTAAGTTCAGTGCCATATGATATTGGTGATAAAGAAAAGAGGTTTTTACTAATGGCTCATAGTGAAAAA CTAGCTCTGGCATTTGGACTGCTAAATACTGATGCTGGTTCCACAATAAAGATTATGAAGAACCTTAGGATATGTGAGGA TTGTCATATTGTGATGTGTGGCGCATCAAAAGTTACAGGAAGAAAAATTGTTGTGAGGGATAACATGAGATTCCACCACT TCCTTAATGGGGCCTGCTCTTGCGGTGATTTTTGGTGACTGAGTGCATATTTGGAAATTCTTCAACAATTGATTTTAATG ACAGAATCAATTATAAGAAGAAGCTTCTGTGAGTAGTTGATCTAAACATATGCTATGAGAAGAAGTCATTGTGCGGATGC AAAACTGACATATTGACGTTGGAAGAATAACTTTGAATTGTTCATTTTATCTTCGAGGAGGTCTAAAGAGGGAGAGGGAA GGAAGTGAGGGCAACTAATGGACTGGTTATTGTTCTCTGCAATGCCAATGTTTTTACAGATACATGATCAGTGTAATTAT GAAGTAGTAACATCAACATAGAGATGAGAAACAAAGGCTGTAATGGTGGATAAGAGGAACTGTACTACATTGATTCTGGT TGAATTCTGAAACTTCATAGAAGAAGAGACATATATAACAAGGGTCAGAAATTGAAAGCAAGGAACGAACAAGTACTGAA GAAACATGCTAAAGAAAGCCCTTAAACTTTCGGTCTTCAATTTGACCTTCTCTCTTTGAGAGCAATCTGCAGTAAGTCTG GAAAAGACCAAGCAGGCTGCTAGAATACCTTGGTAAAAAGTTTTTTACATCATGAGCTATGATCATGGGTAGATCTTGTG CAAATAGATTAAATAAAATCAATTGTATGTTTTGTACTTGTTTTAGCTGTTTATTCATTTGAATTTTCAAAAAACAATGC ATCAAGGTTATTTATTAAAACATGTGAGGCCACAGATAAAGGTGCTTGCAATAATGTATGATTAGTGGAGGATTAAGCTT TGAGATGTTATCATCAATCTTAACAATTGTGACAGATTGCTTGAGTTACAATCTCGTTTTATTTTTAATTTAACATTTAC ATAGAATTAACTCATATTTTATCTATGTTATGCAGATGTACCCCTTCCCCACTTCCAAAAGGAACGACATCCCTTTCCTT ACCGTAAAAGGTACATTGTCAATTAGCTCATCTTGGGAGAATTTTATTTAAGAACGGTTAAAGTGAATTATTTTTAATTT TCAGACCGATTACTAATTTGGAGTATATCGAAACGTAACAAATTATTAGTGTTAAAAACAACATTCAAATGGGTTTCTAT AAAAAATTAAGCTGATGACTATAGCCCCGTCCTTCTACATAATAGCTATCCTTAAACATGATTATCTTTGTCAACTTCTT TTGGCCTTGGCACATTTGTTTTAGCATGAATTTGGTATTTAAAAATACTTTAAAAACGCAAATAATTAGGGAATTTGGAA TTCCATGGTTCCAATCCAGCTCTTGAGTGCACGATTAGGTCTTGTTGTGACATAATATATTTCAATTCTCAAAGAAAATC ATAGATTAATTTAGTTCATCTGCATTATGATTTGCCTGAAGTGCTGATATCGCCTTCACATTTTCATTTCTTTAAAGGAT GATGAACGAACTAATTAACTCACTGAATATTATATCTTTCCCACTTATCCTGTTCAACAATGAAGCCACATACATAACCA ATAATGCAAATATTAAATTCTTATGCACAACTACCTTTTTTATTTTTTAGAAAAGAGTCCCAATCTTATTATTATATTTA TATCTGTGTAATAATTGTATTTTTTAACTTAAAAGATCAAAGCATACACCAGATTTTAGTCATACTCTCATTCTTCTAAA CTCTTCTTCAACATTTCATTCTAACTCTCAATTACTTTCTGTTCACAAAATAAACGAAGAGACTAGGTTGGTTGGTAAGT CAACCTCTCTAGTCAAGCTTTGTATTGAATTCAGTGTGTCATTACATTGAAGAATGCATACGTTTAAATAAAAATGGCCT AGGGTTTCCTGCTTTGCTTGCTCCTCTCCGGATAAGATTACAGGGCTCTGATCGATTCTCTCTTGATCTGGAATAATAGC CTTAATAGCACGAAAGAGGTTTAGGCGAGATTCAGGGAGGTGATTCTGCCTATCATTAACCGACCGATTGATCTAAATCC AGAGCGGTGCATTTTCGCATGCAAATTTAACCATGAAAATTACTTAAACTGCTATTATGGCTCATTAACCAACCTTATTG TGACTGATATGAACATAAATGAAAGTAGTTGACATCACACAAAAAAATCAAACAAAGACTAGAGACAAACATGTATATGG AAATTAAAAGCTTGACATTTCTTTTATTGACAAAAAGTGAATGAAAAGTTCCCCTTTCATAATACACAAAACTCTTAATA TGTCTGATAAAATATAAATGACAGTAATTGACATTACAGAAAGATAAAACCAAAACAAACAAACACTAGAGACAAACAGG GGGTGTTACAATACAATCAATTAGCACCAAGAAACAACCATCACTCCTAATTTGGAATCAAAACTCTCATCAATCAATCA ATACATTAACATGTCAGCAGCGGCCATGATTGATTGATTGACAGCCAGAGAATTCCATGTGTCCATAAAGCCACAATCAT TGAACTGAGTCTCCTGAGCCTCATGAAAGAGGTAGTTGTTGCTTGATTCAATGTAATGTATGATCTCATTTAGGGACTGC AACCTGTTGCTGAGTTCTGCCATCTGAACCCTGAGGATTGCATTCTCAGCCTCAACATTCAGGTACATCTGGGTTGTTAC CCCTATGTTTGTGCTGATCTGGTTGTTCTCCTTCTTGAGCTGTTCCACTTGGGCACTCATACCCTCCAAGTGTTCCTGCT TCCTCATCCTTGATCTTCTTGCAGATTCCCTATTGGACTGCATTCTCTTCCTCTTCTTCTGATCCATGACATGATGATCT CCCTCAGAACCAGAGGCAGAGTTCTGAAGAGAGCTAGAACCACCTGAATAAGCTCCACCAGGAGAAGCCATATGCGCTAA TTACGAATTACCACTTACCTATATATCTAACTCTGCTGTATAATTATGCAGTAACACTAATTTTCTACCTAGTTTTATTA ATTAGATTTGATTGAAGATGTTGTGTTCTGGGGGGAAAAGAGAGGCAAAAAATGGTGTTTTTTTGTGGAAAGAGATGAGG TTTTTAGTTCATGAGAAAACGTAGAACCAGTGGAGGAAAACAACAGAGAAAGATTGCACCAAGTGGGTTCTGCGCCTGAG GGTTGAGTTGATTGTTAAGCCAGATAGGAGGATCTCACAGATTACTGCAGAAGACATTTGTGTTGGTCTGTCTCTCAATC ATACATAACTGCATATGTTATGGATGAACAAAGAAATAATCCAAGTTGTTTTTTTCAGGTAAGAGCAACAAATATTCAAG CTTTGAAAGGAAGGGGTAGGGTGTTTGACTCTGCTGGATAATGGATATGGTGTGTTTGTGCCTTTGTGGTAGGAGGTTAT TATATGCAGAAGAAAATTCTAGAGGTTGGGAAAAGGGTGTCAAAGACTATGGGCAGGGTGACCTCTGATTCTAGAGGGAA TGGAGAAGATGATAAGAAGGAATATGTGATAAGAGAGGAGGGATTGGTTTTTTGACCAATTTTCAGGAGGAGGATAAGAT GAGGAAGGGAAGAGGTTTTGAAGGGATTCAAGGGTTGAATATATAGAGAAACAAGACGCCCACCGTAATAATGGAATGAA TTAAATAATCCAAAAATTGGGCATTGGTGCCATCATCAATAATGTTTGGTGAGCACATAGATATGTATGCATATTTGAAC GGGATACCTCTATTTTGTTTCTATTTCTCTCTTCTTTCTGAATCATATCACAAATAATGTTTCGTCGACACTCTCAGAAT ACGTCTTTAGTGAGATAATGAAGAAATATGATATATGATAGAAAGTGAATATGAGTAAAAATATGATGGAAAGAAAGTGA AGTGTGAACGAAACAATTCTATGTTGCACACCGCCACAGTAAATAAATCCGTGAGAAAGAAAGGAAGGAAGGGACCGGGA AAGGACGATGGTTGCTGGCTGCTCCTGTTCACGTGCACGCGCAGTTATATTTTATTTTATTATATATATTTCTGTGTATA TTGTCATTTATTAAATTGTAACGTAACATGATGGTGATCTACTACTACTTTAGACCTTGGGCCACTTGTAATTTTTATTT CTTGGTAGAATATGCTCATGGAATCTTAGGTAAGGAATGGTAGTTGAGACTCTCTTTTTTTAATCATTTTCCTGTTTTTT AAATTACTCCTATAGGCGTTTGAATTACTTTTTCTTTGTATATACATGGCCAATGGCGTTAGTGGGATACCAAAGCCTGT GACCTATTACAATAAACTCATATCCATTATACATCAATTTCATCTTGTGATTATTGTTTTTTCCATGTATGAAAAAGCTT GTATAATTTTTTTTTTGTAACTACTTTGACATAGAACATGTTCTACCTACCTTATTATAATTATTTTAATAAAACAAGGG GAGCTTTTAAAGTCTTTCTCTATGAAATAGATATCATGTGATACATGTAGCCATTAAAAAATTAAGCTATAGGGTTGTTG ATATATGTATATAACATAGTAAAAAAATATAATAACACAAATGATTCATTTAAGTGGTACATGTCTAATTCTCTTACTGT TTGAATGAGAAATAATTTTGAACTATCAATTTTATGGATCAATATATATATATTATAACTTAACTAGCTAGTATTTTTCA CAGGAGGTGCATGCATTTGCAACAATGATACAGCCCGCAATTGACCACCAAAATATATTTATCTATGAATGATGTAGTAG AAGAAGCACATGGTTCCAGTTGTGGGTTGCTGAAAAGGAAATTTAAAAAGTTTCCCGACCAAAATCCAGTGCGGTGGCCA TGCCAGCCGAACTTTTTGTTAATCAAGGTATTAAATATTACAAATTTACAATGAAAGATCTTTTGTATTTAAATGGTGTC TCAATTTTCTCTCATACCAATCATGAAGTGTGGTAAGGTGGTTGCTCATCTTATCCCATTAACCATGAGGCTGAGGGTTT GAACGTACATCACCCATTAATAAAGCATTCACGATCAGTCGTGTACTGTTTAATGCGAACACTCAGGACGAGGGAGAATA GAGATCTCAGTCTAAAATTATCAATATTTATCCGACAAAATAGTACAAGCCATC
CDS sequence (LotjaGi4g1v0377000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTGGTGAGCGAAGGGCTTTGGAGTGGCAAGTGGTGAGTATTCTCAACACTTGCACCACCCTCCGCCGCGCCAAACA ACTCCACGCCCACATCTACCGCCACAACCTCCACCAATCCTCCTACATCATCACCAACCTCCTCCGCCACCTCACCACCA CCTTCCCCCACCTCCCCATCCACTCCTACCCTCGCCTCCTCTTCTCCCAGGTCCCTTCCCCCAACCCCTTCCTCTACTCC GCCCTCATCCGCGCCTACACCCTCCGAGGACCCTTCACCGAAGCCCTTCGCTTATACACGTCCATGAGAAACCAACGCAT CACCCCCATCTCCTTCACCTTCTCCGCTCTCTTCTCCGCCGTCACAAACCTCACGTTGGGAACCCAGCTCCATGCACATG CCCTCTTGCTTGGCTTTGCCTCTGATATCTTCGTCAACAATACAATGATCAAAATGTACGTGAAGTCCGGGTGTTTGGAC TCCGCGCGCAAGGTGTTCGATGAAATGCCTCAACGGGATGTTGTTTCATGGACTGAGTTGATTACTGCGTATGCCAGGAA TGGTGACATGAATTCCGCGCGCGAGTTGTTTGATGAGTTGGATGTGAAGGATAAGGTGGCTTGGACTGCCATGGTTACTG GGTATGCTCAGAATGCCATGCCGAAGGAGGCGTTGGAGTTTTTTCGGTGCTTGCGGGAGGCGGGTATGGAGACTGATGAG GTTACATTGGCTGGTGCGATTTCTGCTTGTGCTCAATTGGGTGCGTCGAAGGATGCTGACTGGGTGAGGTGCATTGCTGA GAGTTCTGGGTTTGGGCCTGCTCGTAATGTTCTTGTGGGATCGGCGCTGGTGGATATGTACTCTAAATGTGGGAATGTGG AGGAGGCGTATAATGTGTTTAGGGGAATGAAGGAAAGGAATGCTTTTACTTACAGTTCCATGATTGTGGGATTTGCAATT CATGGCCGTGCTCGTGCTGCGATTAAGTTGTTTTATGAGATGTTAGAGACTGAGATAAAACCGAACCATGTTACTTTTGT AGGGGTGCTTGTGGCTTGCACTCATGCAGGCTTGGTAGACCAAGGTCAGTACCTCTTTAGTAACATGGAAGGATGTTATG GTGTTGTTCCCTCTGCAGATCATTATGCTTGCATGGCAGATCTTCTTGGTCGAGCTGGGCACTTAGAGAAGGCACTTCAG CTTGTTGAGACAATGCCTGTGGAGCCTAACGGTGCTGTCTGGGGAGCACTTCTTGGAGCATCACACGTTCATGGGAACCC TGATGTTGCTGAAATTGTGTCTAGACATTTGTTTGAGCTTGAGCCTAATAACATAGGAAACTATTTATTGCTTTCTAACA CGTATGCATCGGCTGGAAGATGGGATGATGTGTCAAGGGTCAGGAAATTGATGAGAGATAAAAATTTGAAGAAGAATCCA GGATATAGTTGGGTTGAATCAAGAAATGGTGTGATTCATGAGTTCTTAGCAGGTGATGTGAAACATCCAGAAATTAATGA GATTAAGAAGGCATTAGACGATCTTTTGGAACGACTGAAGGCTATTGGGTACCTACCAAACCTAAGTTCAGTGCCATATG ATATTGGTGATAAAGAAAAGAGGTTTTTACTAATGGCTCATAGTGAAAAACTAGCTCTGGCATTTGGACTGCTAAATACT GATGCTGGTTCCACAATAAAGATTATGAAGAACCTTAGGATATGTGAGGATTGTCATATTGTGATGTGTGGCGCATCAAA AGTTACAGGAAGAAAAATTGTTGTGAGGGATAACATGAGATTCCACCACTTCCTTAATGGGGCCTGCTCTTGCGGTGATT TTTGGTGA
Protein sequence (LotjaGi4g1v0377000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVGERRALEWQVVSILNTCTTLRRAKQLHAHIYRHNLHQSSYIITNLLRHLTTTFPHLPIHSYPRLLFSQVPSPNPFLYS ALIRAYTLRGPFTEALRLYTSMRNQRITPISFTFSALFSAVTNLTLGTQLHAHALLLGFASDIFVNNTMIKMYVKSGCLD SARKVFDEMPQRDVVSWTELITAYARNGDMNSARELFDELDVKDKVAWTAMVTGYAQNAMPKEALEFFRCLREAGMETDE VTLAGAISACAQLGASKDADWVRCIAESSGFGPARNVLVGSALVDMYSKCGNVEEAYNVFRGMKERNAFTYSSMIVGFAI HGRARAAIKLFYEMLETEIKPNHVTFVGVLVACTHAGLVDQGQYLFSNMEGCYGVVPSADHYACMADLLGRAGHLEKALQ LVETMPVEPNGAVWGALLGASHVHGNPDVAEIVSRHLFELEPNNIGNYLLLSNTYASAGRWDDVSRVRKLMRDKNLKKNP GYSWVESRNGVIHEFLAGDVKHPEINEIKKALDDLLERLKAIGYLPNLSSVPYDIGDKEKRFLLMAHSEKLALAFGLLNT DAGSTIKIMKNLRICEDCHIVMCGASKVTGRKIVVRDNMRFHHFLNGACSCGDFW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 64 | 124 | 61 | 3.6E-7 | ||
| SUPERFAMILY | 75 | 482 | 408 | 2.06E-6 | ||
| ProSiteProfiles | 75 | 109 | 35 | 10.6 | ||
| TIGRFAM | 78 | 109 | 32 | 3.9E-4 | ||
| Pfam | 78 | 121 | 44 | 0.0043 | ||
| Gene3D | 125 | 203 | 79 | 3.2E-17 | ||
| PANTHER | 126 | 203 | 78 | 9.7E-92 | – | |
| ProSiteProfiles | 142 | 176 | 35 | 10.654 | ||
| TIGRFAM | 147 | 175 | 29 | 3.5E-6 | ||
| Pfam | 147 | 173 | 27 | 6.5E-6 | ||
| Pfam | 175 | 200 | 26 | 6.2E-5 | ||
| TIGRFAM | 175 | 200 | 26 | 4.6E-4 | ||
| ProSiteProfiles | 177 | 203 | 27 | 6.062 | ||
| PANTHER | 190 | 258 | 69 | 9.7E-92 | – | |
| ProSiteProfiles | 204 | 238 | 35 | 10.369 | ||
| Pfam | 206 | 235 | 30 | 4.5E-5 | ||
| Gene3D | 221 | 369 | 149 | 4.0E-33 | ||
| ProSiteProfiles | 239 | 273 | 35 | 6.84 | ||
| PANTHER | 271 | 472 | 202 | 9.7E-92 | – | |
| ProSiteProfiles | 276 | 306 | 31 | 8.934 | ||
| TIGRFAM | 282 | 307 | 26 | 4.8E-4 | ||
| Pfam | 307 | 353 | 47 | 4.8E-8 | ||
| ProSiteProfiles | 307 | 341 | 35 | 11.323 | ||
| TIGRFAM | 309 | 342 | 34 | 3.8E-6 | ||
| ProSiteProfiles | 342 | 372 | 31 | 6.04 | ||
| Gene3D | 370 | 496 | 127 | 7.8E-14 | ||
| ProSiteProfiles | 378 | 408 | 31 | 7.125 | ||
| Pfam | 382 | 405 | 24 | 0.64 | ||
| ProSiteProfiles | 444 | 478 | 35 | 7.925 | ||
| Pfam | 480 | 604 | 125 | 1.2E-41 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi4g1v0377000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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