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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0385700 |
| Transcript ID | LotjaGi4g1v0385700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Nuclear transcription factor Y subunit; TAIR: AT1G30500.2 nuclear factor Y, subunit A7; Swiss-Prot: sp|Q84JP1|NFYA7_ARATH Nuclear transcription factor Y subunit A-7; TrEMBL-Plants: tr|C6TCG7|C6TCG7_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi4g1v0385700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:76395093..76401339) extracted from Lotus japonicus Gifu genome v1.2.
GTTATTTAAGCTTATTTGTCCCTGCCATAGATTAGGTCACAATCCAAAAAAACTAATTTTGCAGGTAATATTGTTTTGGA ATTTGGTTGGGAAACATCCAACCACACAAAAGATCATAGAGAATAGGAGCAAAGAAAGAAAGAAAGAAAAATGCACAATT TTGGTGGGTGAGTGAGTGTGGATAGGGAAACAAACACAACAACACAACACAACGCAACCAACAACATCAATTTAGGGCTG CGAACAAGGTCAGCTTCCAATCTCTAAACCCTAATTCTCCTTCATTTACGCTTTTCTTCACTCGAATTAAGCTCACGGAA CCAAAATTAAATTCAAACCCCTTCCAATTTTGAAACTGGTTTCGTTCAATTGTTCCTAGAATTATTGTTTTGTAATAAAA AGATGCATTTTTTTTGTTGGAAACCTAATTTTTTGTGAGCTTCGGGATTTTTAGATAGCAGTCATTGATTTTGAGCTTTT GGGGTTTCAGATAACAGTCATTGATTAGAAATTGGATTTAGTATGAGCTGAAATCCTGTTTTTTTATTTTTTTTCTTGAA TATTATTGAGTACTTCAGATTATTTGTAATTTATATTTACTAGCAATGATGATGAGACTTAAGAGAATATAGTAAATTAG TAAGTGTAGAGAAATGCATGTGGGTTCTGTATGGTGTGATGTTGTAGAGTGTTCTAAAGAATTTGGAAGTGGGTATTGGG GAATGGGATGAGAAATGAAGATTTTCATGCAAAGGAAGGGGTAGATAGCAACTTCAGCTGCATGTAGGGTGAGGATATCA AGTTGGATGGTTTAGATTGTACCTGTGAAGCCTTTTGGTTTGGAGATTGGAAAGGTGAGGAAATTTGTTGCATCAAATGA ATTGCCTGGAAATTAGAAGTGACTGGATCAGTGATGTCAAATCGCGATCAGGGACCATCGCGGTGAGGCGGTGAGCCAAA AATCCGCTAGCGGGAATAGAGGAGGATACCTAGGAAAACTATAGGGAAAATCATTTTGAGTGATTTAGAGGTATTTAATC TATCAGTAAACTTAATGTGATAGAGCATTATGGGGTAGAGAGAGGAAGAGAGAAAAGAGAGGGATTTGAATCTGAAAATC TGAGTTTGTTCTATCTGAATTTCAGTGTATACAACCTGGCTTATATAAGAGAGAGCTCCTTTGGCGAGCTTCCAAACTAA GTCACTAAAGTAGTAAGTAGTAACTAACTCTACAGCTAACTAATACCTGACTTTAACTGAACCATAACTGACAGAACTTC AGTGCTATGCTAACTAACAGTGCTACGCAATGCATAATGCAATACAGATTTAGCCGTTTACTGGTAAACTTGTATAGTTC ACGTACTCTTACATAGACTTGTTCGTGTAGTCGATCCGACCTAGTGGGAAAGGGGCTTTGATCGTTGTTGTTTAGATTAT CCGTTACTTAACTGAATTTATGGTTTTTTTGCAATAAATGTCATGACTCATGACGCCTTTATGAGCAAGTATGGCTCACT GGAATATTACAATCAATTTATGTACATTTTGCTTCGGGTCATCTGTCCACAAAGTGACTCAAAAGGAGTCTGTAATGAAT ATGTATTTGTTGAATACTTTGCTCTACGGCTGTTTAGCAGTGGCCACATACTTTTCCTTATGAGGCATATCAATCGTAGC TTGATAGCTTTTGCGAAAAACCAAAGTTTGAGGTGCTGCATGAATGATCTGTGTATTTTTATTTGAGTTCTACTTCCACT TTGGGTCTGTGGTGAACAATAATTAGTGAAACTTGATTCTTTAAAAGCCTATTAAAAGATATTTGGCTCACGTACCTATG TCTTTTTTTTCTTTATCTAATTTTTTTTTGTTCTGGACTTGAGTTTTCTTATTTTATTCCTTCTGCTTATGCTAGGAGAG ACAATGAACAACAATAACAATAGGAAATTGATGATATTCTTGTGTGAACAGCAGTAACTGTCTGCTTTCACTCTGTTTCG ATTTGATATGTGAGCTCTACAGTCCATCCCATCTTTGTTATGTGCTCTGTTTTGTTTTTTCTGGTTTTGTGACTTATTGT CAGAGTATAGTCAATCCATAATTATTTTTTCTGTTGTATAATTGTTTACACTACTTGCATCTCGCATTTTAATTTGTATT TCTTATTTTCTTTTTCTACCACTCTGCCTTTTCTGTATAGCATATTGCCAACATACTCCTGAGTTCTGTTCTCCATGTTT TTCTTCTTCCAGGTTTGGGCACAGCGTCGCACGTGACTTAGGAATCATGGCCTCTGCTCATGACCTCACTGGTATTTTTC TTTTAAAAAAATTTAATTCAATTTTTTATTTTATTATAACTCTTTCCATTTCATAATGAGTGAGTTACATCCATAACCAT ATTAGAAGATTCTGCATTCTGGTTGTTCCACTTGTATAATAAAATACTATCCCTTTCTTAACTTCTTAGACCTTTATTCA CTAGGTTGACTATCAAGTTATTGTATTAATCTTAGAATTTAGATGAAGCTTATTTTTTAATCTGAAGTTTGACGTTTTTC TTAAATTGATAATTTATTTGTTTCTTCACCCCATCTCAAGCACAAATTTACTGTCTGAACTTATGTATAGAAATGTTTAT CCAGATAATGAAGATGATGAGCAGGAGCAGTCAGAATCACCAGTGCAATCTTCATCTGCAAATGGAATTTCTGATCCAGG TATAGGTACCCAGAATATTCAATATGCAACACCTGGCCAGCTTGGAACTGGGCATCCTATGGTATGAACATCCAAGAATT TGAAGTTTCTCTAGGCTTTCTTATGATTTTGTCTTGACGAGCAAAATATGTTTGTTCAAGGATTTGAGATCCTCAATCCT TATTGAACCCGCATCCTAGTATTTAATTAATTTCACAAATCCTAAGGAATATATTGTTTTGTATAGGTCATACTTGGTTG TCAAATTCGCGAGTTAACTCATATGTTTAGACAAGTTCACATTTCTCCGTAGGGAAAATGAGTTGAATTGCATGAAACTC ATTGCTGAGTCTCAATCTAACTTGTGTGAACTCACAAATCCATCGGTGAGTCTACGAGTCTGGTGTGTCATGTCATTTTT TGCCCAAAATGTAGCATTTTGTAGCCTGAAATGCCAGGTCAAAGTTTTGGACACACAACAATCATTTTATGCCGCGTTTC CTTCAACATACAGTGTCAAAGATCTCCGAAACAAAAATTGAACTGCTTTCTATTGATTTGGTCATGTCATTGTCAAAGCT TTGGTTGTTGATTCAAGTCGAAGCTCGTATTGCTCGTTTGTTATGCAATTGATTTGCTTTATTGCTCAATTAAATTTGCG GCCTTTCTCATGTTCACTGATTCTGTTAATCGAAGCTTGTCTCTGTCCATGCTCTGCTGCTAGTCTTTGGCTGATTGGTT AATTGTGATTTCTTGTTCTTTTTGGCGGTTGCATGTGTGGACCATGATTGATTGGTTGCTGGTTCTAAGTCTAAATATGG TTTATTGTTGTTTTTTGGTTGATTGCTCATATGAGGATATGATTTGGTATTCTCTACATGGTTGTAACATTTACTTTCAT ACTTTTATCATCGTTTGCTTTATTACAGAGTTGAATGATGAATATTTATTATGCACATGGAATTAATTTCTGTTTGGATA CTTATATGTATTTTCATTATTACATTTATATATCATAAGCTCTTACGACTTGTTGAGTTGAATATACGTGTAGGGACTCG AGGTTTCATAGACTATATAGTTTGACAATCTAGGGCTATAGGCATAAGTCATTCAAAACCATCTGATGTTTCTTGCTATG TTGTGGTATACAATAGAGAGAGACGTGGTTATTGTTTTGTCATTCAACCAAATTTCCCAGGCATGTTCTTCCCCTAATTC ATGAATAAATTGGCTGTTTTCACTCCTTTTTTCTATATGTGAAGGTGGGAACTTCCTCATGTGCCTCAACAAATTAATTT GAAAGTTAGTTATTATAAGAAAAGGAGTTCTGGATGCCAGAAATTTCTTGATCATATAATAAATAGCTACTGCTTTTCTT ACTAATACTTAATTTGGCCTTGAGAAGAATTTCAAGCTTCTGTCATACCAAAATATTATGACTTACAGTGCAATCTGAAG TTGGACTGAAATCCCCTATCCCCCAACTGTGTTTCATTTTCTCTCCTACCAATAAAATGTTGGCATGTCAATTAAGAACT ATAGTTTATGAGTGATTACCTGAGCAAGTACTGGTTTCAGTTGTTATCCAGACGCGATATTATAGAAGTGAGAAGTTTGT TCAGAACCACTGTTTACACCAGTAATTATGGCTTGCAAATTTAGTTCACTTTATCTGGGTAAATGTTCAATTGAATCAGT TTAGAACGTAAACTTATTGTGCTTTTTAATGATTTCTGTTGTTTGCTTATCTACTTGAAGGTGCCACCTGTTTATCCATA TCCAGATCCTTACTGTAGAAGCATCTTTGCTCCCTACGAGACACAACCTTATCCCCCACAACCCTATGGTGGACAGCCAA TGGTTTGATATAATTCTAAAATGTTAACTTTTGTAGTAGTGCGGTGGCTTCTTGTAAGAATTTTTTTCTGATCCTCCATT TATTGAACAATTTTTTGTGCCAGGCCCATCTTCAGTTAATGGGAATTCAGCAAGCTGGCGTTCCTCTTCCAACTGATGCA GTTGAGGAGCCTGTATTTGTCAATGCAAAACAATATCATGGAATATTAAGACGTAGACAATCCCGTGCCAAAGCTGAATC AGAAAAGAAAGTTATAAGGAATCGGAAGGTATATCAATCTCTTCAGCTGTTGTGGTTCTTTATGATGTCCAAGTTGATTA AAGAAAATGAAAATAAGAGTTTTATTTTGTCATGAACTGCTAACTTTTTTATGTTAGTATTGATTTTGTCCCCATAGATT GATTGAGCCTCATGCTTCAATCCTCTTAGCATTCCTGCCTGGCTGCCTCTATGGAGGTACTTACTTGTTCTTTAAACAAA TCTTGCAGCCATACTTGCATGAATCTCGACATTTGCATGCTCTTAGGAGAGCAAGAGGATGTAGCGGTCGATTTCTGAAT GCAAAGAAAGATGAGGATCAACAAGATGATGTGGAATCACCTGACAAATCACAGTCCAAGATCAATCTCAATTGTGATAA AAATGATCCTAAATCATCAGATAGGACATCCTTGAACTAGAGAGATGATTATCTAGACGGTGGGGATCTGTTGTATATCA CAAGACACAAGATCAATAATACCAGCCTTGGATATCTCACTATTGCTTCATTCTGGTTTCGTACGACCCCATAGGTATAG GGTTTTGTGCAGGAGGTACGTTAGGATGTAGCATGATGCTGGTAAACTGTAAATTGAAGTGATTTTATCAGTTATTTTCT TTCCAGCCATTGGCAAGTGATATTTTTATTGTGTGAGCATTTCTTTGTATTGGGTTAGAAATTATCCGTAGCCAACTAGC CATGTTGTTTGGTTGGATCATGCTTATTTATCTTACTAGAGACATGTTGACTCTTGTCTTGTTATCAATGGATAGGGTAG TTAAATGAGCATCCACATTGTTGGTGATGGATATTTTTAGTTTGTTTGCTGTAGTTAATGGAAGGGCAGGGTTCATATTT CTCGCTTGTATGAAAATGAATCTTGTTTTTGGTCAGAATTTTTAAGATAAATGTGATGCATGAGAGGATCCAAATCCATG AGGTAACTATAAAATAACTTTTTGATCATTTATCATGAATGACAAGTACCTAACATTAAACTTAAAACTTGCATGTGAAT ACAAATATATCGATTTCATTTATTGAACTAGCCAGCACTAAACTGCATTCTTTTATTGGTGCTCTGAAGTGAAATAAATT ACTTGAGTAGAGATGGCATCGGGTCGGGTGGGTTTTGTCTACCATAAACCTGAACTCGTATACTTGAACCGGACCCTATC CCAAATGGGTTTGGAGATTATGTATAGTGGGAACTCAATAAAGTTACATTGAACCAAAATTATACACTACATCAAAATAG TCTTGAGAAGTGACACTGGAATATCACTGCAACAACTAATATCTTTTCATGATTTCATCTATCTCGCCACAACTTGTGAA GACACATCTAAGAAAAAATTCAGTAAAATTTCAAGCCTCAAGTCGTCGTGAAAGAGAAAGATCAGTCTATCAAGCACAAG AGAGTTT
CDS sequence (LotjaGi4g1v0385700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCTCTGCTCATGACCTCACTGATAATGAAGATGATGAGCAGGAGCAGTCAGAATCACCAGTGCAATCTTCATCTGC AAATGGAATTTCTGATCCAGGTATAGGTACCCAGAATATTCAATATGCAACACCTGGCCAGCTTGGAACTGGGCATCCTA TGGTGCCACCTGTTTATCCATATCCAGATCCTTACTGTAGAAGCATCTTTGCTCCCTACGAGACACAACCTTATCCCCCA CAACCCTATGGTGGACAGCCAATGGCCCATCTTCAGTTAATGGGAATTCAGCAAGCTGGCGTTCCTCTTCCAACTGATGC AGTTGAGGAGCCTGTATTTGTCAATGCAAAACAATATCATGGAATATTAAGACGTAGACAATCCCGTGCCAAAGCTGAAT CAGAAAAGAAAGTTATAAGGAATCGGAAGCCATACTTGCATGAATCTCGACATTTGCATGCTCTTAGGAGAGCAAGAGGA TGTAGCGGTCGATTTCTGAATGCAAAGAAAGATGAGGATCAACAAGATGATGTGGAATCACCTGACAAATCACAGTCCAA GATCAATCTCAATTGTGATAAAAATGATCCTAAATCATCAGATAGGACATCCTTGAACTAG
Protein sequence (LotjaGi4g1v0385700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASAHDLTDNEDDEQEQSESPVQSSSANGISDPGIGTQNIQYATPGQLGTGHPMVPPVYPYPDPYCRSIFAPYETQPYPP QPYGGQPMAHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESEKKVIRNRKPYLHESRHLHALRRARG CSGRFLNAKKDEDQQDDVESPDKSQSKINLNCDKNDPKSSDRTSLN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 48 | 48 | - | – | |
| PANTHER | 9 | 197 | 189 | 2.4E-65 | ||
| MobiDBLite | 19 | 46 | 28 | - | – | |
| SMART | 107 | 168 | 62 | 2.0E-35 | ||
| ProSiteProfiles | 108 | 168 | 61 | 36.82 | ||
| Pfam | 110 | 165 | 56 | 1.5E-25 | ||
| PRINTS | 111 | 133 | 23 | 1.8E-22 | ||
| ProSitePatterns | 113 | 133 | 21 | - | ||
| PRINTS | 142 | 165 | 24 | 1.8E-22 | ||
| MobiDBLite | 166 | 206 | 41 | - | – | |
| MobiDBLite | 166 | 183 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-binding transcription factor activity | A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Cellular component | CCAAT-binding factor complex | A heteromeric transcription factor complex that binds to the CCAAT-box upstream of promoters; functions as both an activator and a repressor, depending on its interacting cofactors. Typically trimeric consisting of NFYA, NFYB and NFYC subunits. In Saccharomyces, it activates the transcription of genes in response to growth in a nonfermentable carbon source and consists of four known subunits: HAP2, HAP3, HAP4 and HAP5. |
Expression pattern of LotjaGi4g1v0385700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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