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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0395100 |
| Transcript ID | LotjaGi4g1v0395100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein family; TAIR: AT4G02750.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g02750; TrEMBL-Plants: tr|A0A072TUD6|A0A072TUD6_MEDTR Pentatricopeptide (PPR) repeat protein; Found in the gene: LotjaGi4g1v0395100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:77340645..77343324) extracted from Lotus japonicus Gifu genome v1.2.
TGATGATATGACTCAAACACTTCATTTCAATATCAACTTTGTGTTTCCCTCGTCACCACACCCACACACTCATGCTCAGT AGCATCATAGTCTCCATTGCACTGAAGCCAACACCGTCTTCCACTGCGCGCCACACCCACTTCCTTCTCGTGTTCGCCAA ACACTTCTCCTCTTACGATGTGTACCGTGCCAACCTCAACATCGCCGCATTCTCACGAGCCGGAAACATCACCGCCGCAC GCCAAGTGTTCGACAAAATGCCAACGAAAGACGTCGTCACCTGGAACTCCATGCTCACTGCCTACTGGCACAGCGGCTTC CCGCAGCACTCCAGAGCGCTATTCGATGCAATGCCGATGAAGAATGTGGTTTCATGGAACGCCATGGTTGCAGGTTGCGT GCAAAATGACATGCTGGACGAGGCGTTTAACTACTTCGCTGCCATGCCGGAGAGGAATGCTGCGTCGTACAATGCGATGA TATCAGGCTTCATTAAGTTTGGGCGGTTGTGCGACGCGCAGAGGTTATTCAAAGAGATGCCTTGTCCGAATGTGGTTTCG TACACTGTGATGATTGATGGGTACGTGAAGGTGAAGGAAGGTGGTGGGATTGCGCGCGCGAGGGCGCTGTTCGATGCAAT GCCTCGCAGGAACGAGGTTTCGTGGACGGTGATGATCAACGGCCTTGTGGAGAACGGGTTGTATGAGGAAGCGTGGGAGC TGTTTGGGAGAATGCCGCAGAAGAATGTTGTTGCCAGCACTGCTATGATCACCGGGTTTTGTAAACAGGGGAAGGTGGAT GAGGCTTGGACCTTGTTTCAACAGATTCGATGCAGGGATATCGCTTCCTGGAATATAATGATAACGGGTAAGCCAAAATT TCAAAAGCCAGAGCATTTTTATTCTCTTGTTCATTCAAAGTTCCAAACTTTAGGCCAATTATATTTATATTATATGCTCA CTTGTAAATAGAGAAAACAATGCTAAATTGATGGAGAGAAGCCCCAAATTGATTCTCAACTTGTACTACCAAGTACCAAC TTCGAGTTAATCCCCAACCAAAGAAATACCATTTTAATCTCTAAGCACGTTTGGTTTCACGGTTGAATGCTCTAGAATCA TTTCTGGTTAAAAGCTACAAGTCTTAGCTTATGTGTAATCTTCATTGGATTCTATGCAAATTGTGAAACCAAAAATGCAC TTACTTGAAGTTGGTGTAAAAGTTGATGTGAGTCCCTTTTAAACAGTGAAGTCAGTGTACAATGTATTTTGGTTTATATA TTTAGAACATATTTTATTAGAATGATGGGGAATGGAAAAACAAGAACTAGTTGCAGCTGAAGTCCTAGGAGCAGGAGGTT TTTATTTTCTTTCTATGCTGTCATTGCATTTGTTTAGATTTTTTTTCATAATTATTTCATTTTTTTCATAATTGATTCAT GGTTTGAAGGTTATGCGCAAAATGGGAGAGGGGAAGAGGCACTGAATTTATTTTCACAGATGGTCAGGACTGGTATGCAA CCGGATGACTTGATTTTTGTTTCACTTTTTACTGCCTGTGCTAGTCTTGCATTGCTTGACCAAGGAAGACAGACATATGC CCTTGTAATTAAGCATGGCTTTGATTCAGATTTGTCGGTGAATAATGCCTTGGTTACTATGTACAGCAAATGTGGTAGCA TTGTTGATTCTGAGTTAGCTTTTGGACAAACTTCCCAGCCGGACATTGTTTCATGGAACACTATCATTGCTGCATTTGCA CAGCATGTTCTCTATTACAAAGCACGCTCCTACTTCGACCAGATGATAGCAGTTGGGGTTCGACCTGATGGCATAACTTT TCTGAGTTTGCTATCTGTCTGTTGCCGTGCCGGGAAGATTGATGAGAGCATGAATCTGTTTAATTTGATGGTCCATGACT ATGGTATTCCACCAAGGTCTGAACACTATGCTTGTTTGGTTGATGTCATGAGTCGAGCGGGTCAGTTGCAGAGAGCCTGC GAAATAATCCAGGAGATGCCATTCGAGGCAGATTGTAGCATCTGGGGCGCTCTTCTTGCGGGTTGTAATGTTCATTTAAA CGTGAAATTGGGGGAACTGGCAGCTGGAAGAATTTTGAATTTGGATCCTTGTAATTCGGGTGCTTATGTTTTGCTGTCTA ATATATATGCTGCTGCTGGAAGATGGAAGGATGTCAATAGAGTCAGGGTTCTGATGAAAGAGCAAGGAGTTAAGAAACAA AGAGCTTATAGTTCGGTGCAGATTGGAAACAAACTACACTGTTTCGTTGGAGGGGATCCATCACATCCAAGTATTGATGA TATTCATATTGCTTTAAGGAGGATTACATTACATATGAAAGTGAAGGGTGACTCTAAAGAAGAGGCTGTTAGTTAATTCA ACTGCCAACTATTTTGACTTTTTTACAAGTGATGATAAAGATTTTATTGGGAGCCAGGGGGAGGCAATCGTGTGTAACTT TTACTGAGTTGAAAAGGACAGAGGGGAGGGGAGCAACCCTCTATAGTTTTGTAAGAAGAGGGTAGGGCAAATAAATCCAA GTTACTATTATTCCCAATGCAGATAATATTTTTAAATGTACCTATATAAAAAGAAAATATTTTTCTTTCATGTCCTCTCT AATTTAGAGGGTTGTGTTGTCTTCTCATTTTTAATCACTA
CDS sequence (LotjaGi4g1v0395100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTCAGTAGCATCATAGTCTCCATTGCACTGAAGCCAACACCGTCTTCCACTGCGCGCCACACCCACTTCCTTCTCGT GTTCGCCAAACACTTCTCCTCTTACGATGTGTACCGTGCCAACCTCAACATCGCCGCATTCTCACGAGCCGGAAACATCA CCGCCGCACGCCAAGTGTTCGACAAAATGCCAACGAAAGACGTCGTCACCTGGAACTCCATGCTCACTGCCTACTGGCAC AGCGGCTTCCCGCAGCACTCCAGAGCGCTATTCGATGCAATGCCGATGAAGAATGTGGTTTCATGGAACGCCATGGTTGC AGGTTGCGTGCAAAATGACATGCTGGACGAGGCGTTTAACTACTTCGCTGCCATGCCGGAGAGGAATGCTGCGTCGTACA ATGCGATGATATCAGGCTTCATTAAGTTTGGGCGGTTGTGCGACGCGCAGAGGTTATTCAAAGAGATGCCTTGTCCGAAT GTGGTTTCGTACACTGTGATGATTGATGGGTACGTGAAGGTGAAGGAAGGTGGTGGGATTGCGCGCGCGAGGGCGCTGTT CGATGCAATGCCTCGCAGGAACGAGGTTTCGTGGACGGTGATGATCAACGGCCTTGTGGAGAACGGGTTGTATGAGGAAG CGTGGGAGCTGTTTGGGAGAATGCCGCAGAAGAATGTTGTTGCCAGCACTGCTATGATCACCGGGTTTTGTAAACAGGGG AAGGTGGATGAGGCTTGGACCTTGTTTCAACAGATTCGATGCAGGGATATCGCTTCCTGGAATATAATGATAACGGGTTA TGCGCAAAATGGGAGAGGGGAAGAGGCACTGAATTTATTTTCACAGATGGTCAGGACTGGTATGCAACCGGATGACTTGA TTTTTGTTTCACTTTTTACTGCCTGTGCTAGTCTTGCATTGCTTGACCAAGGAAGACAGACATATGCCCTTGTAATTAAG CATGGCTTTGATTCAGATTTGTCGGTGAATAATGCCTTGGTTACTATGTACAGCAAATGTGGTAGCATTGTTGATTCTGA GTTAGCTTTTGGACAAACTTCCCAGCCGGACATTGTTTCATGGAACACTATCATTGCTGCATTTGCACAGCATGTTCTCT ATTACAAAGCACGCTCCTACTTCGACCAGATGATAGCAGTTGGGGTTCGACCTGATGGCATAACTTTTCTGAGTTTGCTA TCTGTCTGTTGCCGTGCCGGGAAGATTGATGAGAGCATGAATCTGTTTAATTTGATGGTCCATGACTATGGTATTCCACC AAGGTCTGAACACTATGCTTGTTTGGTTGATGTCATGAGTCGAGCGGGTCAGTTGCAGAGAGCCTGCGAAATAATCCAGG AGATGCCATTCGAGGCAGATTGTAGCATCTGGGGCGCTCTTCTTGCGGGTTGTAATGTTCATTTAAACGTGAAATTGGGG GAACTGGCAGCTGGAAGAATTTTGAATTTGGATCCTTGTAATTCGGGTGCTTATGTTTTGCTGTCTAATATATATGCTGC TGCTGGAAGATGGAAGGATGTCAATAGAGTCAGGGTTCTGATGAAAGAGCAAGGAGTTAAGAAACAAAGAGCTTATAGTT CGGTGCAGATTGGAAACAAACTACACTGTTTCGTTGGAGGGGATCCATCACATCCAAGTATTGATGATATTCATATTGCT TTAAGGAGGATTACATTACATATGAAAGTGAAGGGTGACTCTAAAGAAGAGGCTGTTAGTTAA
Protein sequence (LotjaGi4g1v0395100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLSSIIVSIALKPTPSSTARHTHFLLVFAKHFSSYDVYRANLNIAAFSRAGNITAARQVFDKMPTKDVVTWNSMLTAYWH SGFPQHSRALFDAMPMKNVVSWNAMVAGCVQNDMLDEAFNYFAAMPERNAASYNAMISGFIKFGRLCDAQRLFKEMPCPN VVSYTVMIDGYVKVKEGGGIARARALFDAMPRRNEVSWTVMINGLVENGLYEEAWELFGRMPQKNVVASTAMITGFCKQG KVDEAWTLFQQIRCRDIASWNIMITGYAQNGRGEEALNLFSQMVRTGMQPDDLIFVSLFTACASLALLDQGRQTYALVIK HGFDSDLSVNNALVTMYSKCGSIVDSELAFGQTSQPDIVSWNTIIAAFAQHVLYYKARSYFDQMIAVGVRPDGITFLSLL SVCCRAGKIDESMNLFNLMVHDYGIPPRSEHYACLVDVMSRAGQLQRACEIIQEMPFEADCSIWGALLAGCNVHLNVKLG ELAAGRILNLDPCNSGAYVLLSNIYAAAGRWKDVNRVRVLMKEQGVKKQRAYSSVQIGNKLHCFVGGDPSHPSIDDIHIA LRRITLHMKVKGDSKEEAVS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 19 | 19 | - | – | |
| PANTHER | 32 | 125 | 94 | 1.7E-102 | – | |
| ProSiteProfiles | 36 | 66 | 31 | 7.169 | ||
| Gene3D | 39 | 175 | 137 | 4.1E-32 | ||
| Pfam | 44 | 67 | 24 | 0.38 | ||
| ProSiteProfiles | 67 | 101 | 35 | 9.701 | ||
| Pfam | 69 | 98 | 30 | 5.4E-4 | ||
| Pfam | 100 | 128 | 29 | 1.5E-5 | ||
| TIGRFAM | 100 | 128 | 29 | 1.6E-4 | ||
| ProSiteProfiles | 102 | 128 | 27 | 6.051 | ||
| Pfam | 129 | 173 | 45 | 1.4E-9 | ||
| ProSiteProfiles | 129 | 163 | 35 | 10.38 | ||
| PANTHER | 165 | 252 | 88 | 1.7E-102 | – | |
| Gene3D | 176 | 254 | 79 | 1.5E-19 | ||
| ProSiteProfiles | 194 | 228 | 35 | 11.849 | ||
| TIGRFAM | 196 | 228 | 33 | 1.4E-7 | ||
| Pfam | 196 | 226 | 31 | 2.7E-8 | ||
| SUPERFAMILY | 211 | 513 | 303 | 1.96E-6 | ||
| PANTHER | 229 | 314 | 86 | 1.7E-102 | – | |
| Pfam | 230 | 251 | 22 | 1.8E-5 | ||
| TIGRFAM | 230 | 257 | 28 | 2.8E-6 | ||
| ProSiteProfiles | 230 | 255 | 26 | 6.643 | ||
| Gene3D | 255 | 353 | 99 | 3.7E-19 | ||
| ProSiteProfiles | 256 | 290 | 35 | 13.68 | ||
| Pfam | 256 | 303 | 48 | 3.4E-11 | ||
| TIGRFAM | 259 | 291 | 33 | 1.4E-9 | ||
| ProSiteProfiles | 291 | 325 | 35 | 6.073 | ||
| PANTHER | 321 | 522 | 202 | 1.7E-102 | – | |
| Gene3D | 354 | 545 | 192 | 8.6E-31 | ||
| Pfam | 356 | 405 | 50 | 3.5E-9 | ||
| ProSiteProfiles | 357 | 391 | 35 | 10.402 | ||
| TIGRFAM | 359 | 392 | 34 | 2.1E-4 | ||
| ProSiteProfiles | 392 | 427 | 36 | 10.128 | ||
| TIGRFAM | 394 | 427 | 34 | 1.0E-5 | ||
| ProSiteProfiles | 428 | 458 | 31 | 6.829 | ||
| Pfam | 432 | 455 | 24 | 0.63 | ||
| ProSiteProfiles | 494 | 528 | 35 | 7.958 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0395100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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