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LotjaGi4g1v0396700.2

Overview

Field Value
Gene ID LotjaGi4g1v0396700
Transcript ID LotjaGi4g1v0396700.2
Related isoforms 5
Lotus japonicus genome version Gifu v1.2
Description Ubiquitin carboxyl-terminal hydrolase; TAIR: AT2G22310.1 ubiquitin-specific protease 4; Swiss-Prot: sp|Q8LAM0|UBP4_ARATH Ubiquitin carboxyl-terminal hydrolase 4; TrEMBL-Plants: tr|A0A0L9TKM9|A0A0L9TKM9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0396700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:77457554..77461151) extracted from Lotus japonicus Gifu genome v1.2.

ATGGGTGCTACGGGCTCCAAGCTTGAGAAGGCTCTTGGCGATCAATTCCCTGAAGGAGAACGTTACTTCGGCCTTGAGAA TTTCGGCAACACTTGTTATTGCAACAGTGTTTTGCAGGTCTTCAATCCAATCCGATTCACTCTTTTCTCGTTTTTCATTT GTTTATTTTTCTGCATCCAATCAATGGGGTGGTTGTCTTTGCTTAATTCTATGGTTTGTTGATTATGGTGAATGTATTTT GTTGTTTTGGATGTTCTGTTGACTTGTTTTGCTGAATTTTGAAGTGCTTGATTATCGAATCGGTATAGGGATTTAGCATC AACGGTTTTTTGTAATAATAATGATTAGTATTAAAGTCTAGAGTTGAAATTGCTGTTCAATCTTTTCTCTGTGGCATTCA ATTGTATTATCGGTGATAGGTAAATGCACGTGTCAATTCGTTGCTAGGTATGAGTCATGACCTTGATGAGAAGATGTAGT AAAAGCTATTACCCTGTGGATGATGTCAATGCATTTGACCTCTCTAGTGATAGTGTTTGAGAATGGGTGTGTTTATTATT TTCCGGCAAAATTTTAAGGGTTGGTCACTAACAAGTTATTCAATTTGCCACCTTCCGCAGGCACTATACTTCTGTGTGCC ATTTCGGGAACAACTGCTGGAGTATTATGGAAATAACAAAAGCATAGGGGATCCGGAAGAAAATCTTTTGACTTGCTTAG CTGACTTATTTTCACAGGTAATTAGTCTGTACTCGGTAGTCAGGAAACTGCTTGGCATTACATTTTAGTGCCATTAAGCT TTGACATATTTGACTGGCTAAAGCATGATTCTCCATTGGAGAGTATGTATTGTCTTCGCTAACTGTGGCTACGGTGCATT ACCCATGCCTCAGGAATGGCTTCAAGCTATTTTCAGTGTGGTTTTGTAAATTTTTCCATTTTGTCTATATCTAATTATCT AAGGAAATTTTGTTCAACTTATTGTTTCAAATGTCCATTTAATGGCACTTACTTGAATAACTCGTACTTATACCCAAGAA ATTGGTTCAAGGTATTTGTGGTGTGTTTTATGAGAGTATTTTATGATGAATCAATTTTTCCAAATGTTGCCTTGAAACAG ATGTAAGTTTGATGGCACTTACATGCCTATTTCGTTCTTGGTTATGAATTTACGTTCTATTTATTTTTTGGTATAGATAA GTTCCCAGAAGAAGAAAACAGGTGTCATTGCTCCCAAACGATTTGTACAGAGGTTGAAGAAACAGAATGAACTCTTCCGT AGCTATATGCACCAGGTATGTGCTTAAGTCTAGAATGAGCTTCTTGTACAGGTGATATTCCTAAAGTCTGAACATGTACC CTTTAAATATGATTTTTGTTAACTATTATATGCCCTTTGGGAAACATAATCTTTTAAATCAGCTTTTCCATAGGCAGCAA TCCCATATCGCTTTGTCATAGTGGGCAATTACTCTATCATGTTTGCTCATACTTTGACTGTATATCTCTGGTATACAAAT GGTGATTCTTCTTTTTCTGCGAGGAAATAAAAATAGTGTTTCTGATGATAGATGTTTGTTTAACAAGTGATTTTAACTTA GTTTGTACAATGACAAATTGTTACTTTCAAATGAGATTGTATATCTCAATTGTTTACTTAAAATGTTATTGGACCATGTA AGCTTATTCATTATTATGATACTATCATTGATTGTTTATTGTTGGTTAAACTTAATGTTCTTTGGGTGGACAACGTATGT CTCTTATTTTGTCTTAGTTTTTCGTTAGAAACAACATTTCTCATTATTGGTATTCTCTTTGTGATAGGATGCACATGAGT TCTTGAACTTTTTGCTGAATGAACTTGTCGACATTCTGGAGAAAGAGGCTCAGGCTGCAAAAACTGATCCAGATACATCA CCACCTTCTGAAAAGGTTGCCAATGGGTTCAAGAATGGTCATGTTAATGGTGGTCAGAAAGAGCCGTTAGTTACTTGGGT ACACAAAAATTTTCAGGTGACCTTGCATTGCCAATTTAATGTTTTCATTTTGCATATTGCTTGCGAAAGAATTTGGAGGG ACCAACATTTTGACCTTTGTATCGGATCCAGTCAATTGATGTTCTCCTTTAAGTGCGCATGTCTTTGTAACTACCAGTTT GGGCTTATCCATTCATGTTTGCTTTTACCTGAATTATTATGGAGATCAGCACATTATCTGAGATTCTAATGTGCTTATTT TTTCTTGTTTAATTTTATATTATGAACTTTAGTATCACACTTGATAAAACTAAAGTAATAGTAATTTTGCATTGGTCAGA TCTTATATATTGTTTTTTCTTTTGTGAGGAGGTGCTTGACGTTACTCTTTCTCTGTTTTGATCGCAAAAATTAAGATTTA TTTCTACTTTGCGGAATTTCATTGTTGGTACTTGTGGTTAGGGAATACTCACCAACGAGACAAGATGCTTGCAATGTGAA ACGGTTACAGCCAGAGATGAAACATTTTTTGACTTGAGCCTTGATATTGAGCAAAACAGTTCAATTACAAGCTGCTTGAA AAATTTCAGTTCCACTGAGACATTGAATGCTGAGGACAAATTTTTCTGTGACAAATGCTGCAGGTATATCGCTTTTAGAC AATCTTATTTCTATAATTACATGAGTACTTCTTTTCTGTGTTAGCTATTACTTGGTTTCTTTAGTGCTTTGGGAAATGTA GAGACCCTGTTCAGCCATTTTGAATCACTCGTTTGGCTGAACAATGATGCTGTTTGTTGATGTAATAACAACAATCAAGC CTTATCCCTCTGGTTGAAATTGGTTAATGGATTAGTTGATGTCATTAGATTTTATTGAAAACAAATTGTCTGAACTCCAT TTAGAGCAAGGTCATTTTGATATTCTCCTCAAGTTTTCTTATATCTTTCTCTTCTGGTCCTTGAAATGTTTGTTAAATTG TTTGTTGTGAAGCTAGCTCTGATATCGAATACCTTGAATATCATGTTTTGTTTACAACAAGCAAGTCATAATATGTGCAT TTTTCCATTGATTGACATTGTTCATTCGTTATCTGAACAGGGATTTATGGTCATGTTAGTTTATTGTGTATAAATATATA CATGCATTCTCTTCCTTCGTTTTTCATGTCTATTTACCAGCCTTGATAACCAAGATGTGAGCTTTCTTATGATATTAGTT TGCAAGAAGCTCAGAAGAGGATGAAGATAAAGAAACCACCTCACATCTTGGTCATCCATCTTAAGCGGTTTAAATACATG GAACAGCTGGGCCGGTACAAGAAGCTGTCTTACCGAGTTGTTTTCCCGCTTGAGCTGAAGTTGAGCAACACTGTTGAAGA TGCAGATATTGAGTATTCTCTATTTGCAGTAGTTGTCCATGTCGGGAGTGGGCCCAACCATGGCCATTATGTCAGCCTCG TGAAGAGTCATAACCACTGGTTATTTTTTGATGACGAAAATGTTGAGATGATTGATGAGTCTGCTGTGCAAACGTTCTTT GGATCAGCACAGGAATATTCTAGCAACACAGACCATGGTTACATTTTGTTCTATGAGACCCTTGGTGACAAGAACTAG
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0396700.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGTGCTACGGGCTCCAAGCTTGAGAAGGCTCTTGGCGATCAATTCCCTGAAGGAGAACGTTACTTCGGCCTTGAGAA TTTCGGCAACACTTGTTATTGCAACAGTGTTTTGCAGATAAGTTCCCAGAAGAAGAAAACAGGTGTCATTGCTCCCAAAC GATTTGTACAGAGGTTGAAGAAACAGAATGAACTCTTCCGTAGCTATATGCACCAGGATGCACATGAGTTCTTGAACTTT TTGCTGAATGAACTTGTCGACATTCTGGAGAAAGAGGCTCAGGCTGCAAAAACTGATCCAGATACATCACCACCTTCTGA AAAGGTTGCCAATGGGTTCAAGAATGGTCATGTTAATGGTGGTCAGAAAGAGCCGTTAGTTACTTGGGTACACAAAAATT TTCAGGGAATACTCACCAACGAGACAAGATGCTTGCAATGTGAAACGGTTACAGCCAGAGATGAAACATTTTTTGACTTG AGCCTTGATATTGAGCAAAACAGTTCAATTACAAGCTGCTTGAAAAATTTCAGTTCCACTGAGACATTGAATGCTGAGGA CAAATTTTTCTGTGACAAATGCTGCAGTTTGCAAGAAGCTCAGAAGAGGATGAAGATAAAGAAACCACCTCACATCTTGG TCATCCATCTTAAGCGGTTTAAATACATGGAACAGCTGGGCCGGTACAAGAAGCTGTCTTACCGAGTTGTTTTCCCGCTT GAGCTGAAGTTGAGCAACACTGTTGAAGATGCAGATATTGAGTATTCTCTATTTGCAGTAGTTGTCCATGTCGGGAGTGG GCCCAACCATGGCCATTATGTCAGCCTCGTGAAGAGTCATAACCACTGGTTATTTTTTGATGACGAAAATGTTGAGATGA TTGATGAGTCTGCTGTGCAAACGTTCTTTGGATCAGCACAGGAATATTCTAGCAACACAGACCATGGTTACATTTTGTTC TATGAGACCCTTGGTGACAAGAACTAG
Download CDS Sequence

Protein sequence (LotjaGi4g1v0396700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGATGSKLEKALGDQFPEGERYFGLENFGNTCYCNSVLQISSQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNF LLNELVDILEKEAQAAKTDPDTSPPSEKVANGFKNGHVNGGQKEPLVTWVHKNFQGILTNETRCLQCETVTARDETFFDL SLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKPPHILVIHLKRFKYMEQLGRYKKLSYRVVFPL ELKLSNTVEDADIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILF YETLGDKN
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24006
1 39 39 5.4E-182 –
Gene3D
G3DSA:3.90.70.10
1 324 324 5.1E-107 –
ProSiteProfiles
PS50235
1 324 324 47.528
IPR028889
PANTHER
PTHR24006:SF774
1 39 39 5.4E-182 –
SUPERFAMILY
SSF54001
21 322 302 1.22E-81
IPR038765
ProSitePatterns
PS00972
24 39 16 -
IPR018200
CDD
cd02663
24 322 299 4.1031E-175 –
PANTHER
PTHR24006:SF774
38 324 287 5.4E-182 –
PANTHER
PTHR24006
38 324 287 5.4E-182 –
Pfam
PF00443
44 321 278 5.0E-44
IPR001394
MobiDBLite
mobidb-lite
94 120 27 - –
ProSitePatterns
PS00973
255 273 19 -
IPR018200

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006511
Biological process Ubiquitin-dependent protein catabolic process The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein.
Subterm of
GO:0016579
Biological process Protein deubiquitination The removal of one or more ubiquitin groups from a protein.
Subterm of
GO:0036459
Molecular function Thiol-dependent ubiquitinyl hydrolase activity Catalysis of the thiol-dependent hydrolysis of an ester, thioester, amide, peptide or isopeptide bond formed by the C-terminal glycine of ubiquitin.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0396700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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