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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0396700 |
| Transcript ID | LotjaGi4g1v0396700.4 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ubiquitin carboxyl-terminal hydrolase; TAIR: AT2G22310.1 ubiquitin-specific protease 4; Swiss-Prot: sp|O24454|UBP3_ARATH Ubiquitin carboxyl-terminal hydrolase 3; TrEMBL-Plants: tr|A0A072TTI7|A0A072TTI7_MEDTR Ubiquitin carboxyl-terminal hydrolase; Found in the gene: LotjaGi4g1v0396700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:77457554..77461151) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGTGCTACGGGCTCCAAGCTTGAGAAGGCTCTTGGCGATCAATTCCCTGAAGGAGAACGTTACTTCGGCCTTGAGAA TTTCGGCAACACTTGTTATTGCAACAGTGTTTTGCAGGTCTTCAATCCAATCCGATTCACTCTTTTCTCGTTTTTCATTT GTTTATTTTTCTGCATCCAATCAATGGGGTGGTTGTCTTTGCTTAATTCTATGGTTTGTTGATTATGGTGAATGTATTTT GTTGTTTTGGATGTTCTGTTGACTTGTTTTGCTGAATTTTGAAGTGCTTGATTATCGAATCGGTATAGGGATTTAGCATC AACGGTTTTTTGTAATAATAATGATTAGTATTAAAGTCTAGAGTTGAAATTGCTGTTCAATCTTTTCTCTGTGGCATTCA ATTGTATTATCGGTGATAGGTAAATGCACGTGTCAATTCGTTGCTAGGTATGAGTCATGACCTTGATGAGAAGATGTAGT AAAAGCTATTACCCTGTGGATGATGTCAATGCATTTGACCTCTCTAGTGATAGTGTTTGAGAATGGGTGTGTTTATTATT TTCCGGCAAAATTTTAAGGGTTGGTCACTAACAAGTTATTCAATTTGCCACCTTCCGCAGGCACTATACTTCTGTGTGCC ATTTCGGGAACAACTGCTGGAGTATTATGGAAATAACAAAAGCATAGGGGATCCGGAAGAAAATCTTTTGACTTGCTTAG CTGACTTATTTTCACAGGTAATTAGTCTGTACTCGGTAGTCAGGAAACTGCTTGGCATTACATTTTAGTGCCATTAAGCT TTGACATATTTGACTGGCTAAAGCATGATTCTCCATTGGAGAGTATGTATTGTCTTCGCTAACTGTGGCTACGGTGCATT ACCCATGCCTCAGGAATGGCTTCAAGCTATTTTCAGTGTGGTTTTGTAAATTTTTCCATTTTGTCTATATCTAATTATCT AAGGAAATTTTGTTCAACTTATTGTTTCAAATGTCCATTTAATGGCACTTACTTGAATAACTCGTACTTATACCCAAGAA ATTGGTTCAAGGTATTTGTGGTGTGTTTTATGAGAGTATTTTATGATGAATCAATTTTTCCAAATGTTGCCTTGAAACAG ATGTAAGTTTGATGGCACTTACATGCCTATTTCGTTCTTGGTTATGAATTTACGTTCTATTTATTTTTTGGTATAGATAA GTTCCCAGAAGAAGAAAACAGGTGTCATTGCTCCCAAACGATTTGTACAGAGGTTGAAGAAACAGAATGAACTCTTCCGT AGCTATATGCACCAGGTATGTGCTTAAGTCTAGAATGAGCTTCTTGTACAGGTGATATTCCTAAAGTCTGAACATGTACC CTTTAAATATGATTTTTGTTAACTATTATATGCCCTTTGGGAAACATAATCTTTTAAATCAGCTTTTCCATAGGCAGCAA TCCCATATCGCTTTGTCATAGTGGGCAATTACTCTATCATGTTTGCTCATACTTTGACTGTATATCTCTGGTATACAAAT GGTGATTCTTCTTTTTCTGCGAGGAAATAAAAATAGTGTTTCTGATGATAGATGTTTGTTTAACAAGTGATTTTAACTTA GTTTGTACAATGACAAATTGTTACTTTCAAATGAGATTGTATATCTCAATTGTTTACTTAAAATGTTATTGGACCATGTA AGCTTATTCATTATTATGATACTATCATTGATTGTTTATTGTTGGTTAAACTTAATGTTCTTTGGGTGGACAACGTATGT CTCTTATTTTGTCTTAGTTTTTCGTTAGAAACAACATTTCTCATTATTGGTATTCTCTTTGTGATAGGATGCACATGAGT TCTTGAACTTTTTGCTGAATGAACTTGTCGACATTCTGGAGAAAGAGGCTCAGGCTGCAAAAACTGATCCAGATACATCA CCACCTTCTGAAAAGGTTGCCAATGGGTTCAAGAATGGTCATGTTAATGGTGGTCAGAAAGAGCCGTTAGTTACTTGGGT ACACAAAAATTTTCAGGTGACCTTGCATTGCCAATTTAATGTTTTCATTTTGCATATTGCTTGCGAAAGAATTTGGAGGG ACCAACATTTTGACCTTTGTATCGGATCCAGTCAATTGATGTTCTCCTTTAAGTGCGCATGTCTTTGTAACTACCAGTTT GGGCTTATCCATTCATGTTTGCTTTTACCTGAATTATTATGGAGATCAGCACATTATCTGAGATTCTAATGTGCTTATTT TTTCTTGTTTAATTTTATATTATGAACTTTAGTATCACACTTGATAAAACTAAAGTAATAGTAATTTTGCATTGGTCAGA TCTTATATATTGTTTTTTCTTTTGTGAGGAGGTGCTTGACGTTACTCTTTCTCTGTTTTGATCGCAAAAATTAAGATTTA TTTCTACTTTGCGGAATTTCATTGTTGGTACTTGTGGTTAGGGAATACTCACCAACGAGACAAGATGCTTGCAATGTGAA ACGGTTACAGCCAGAGATGAAACATTTTTTGACTTGAGCCTTGATATTGAGCAAAACAGTTCAATTACAAGCTGCTTGAA AAATTTCAGTTCCACTGAGACATTGAATGCTGAGGACAAATTTTTCTGTGACAAATGCTGCAGGTATATCGCTTTTAGAC AATCTTATTTCTATAATTACATGAGTACTTCTTTTCTGTGTTAGCTATTACTTGGTTTCTTTAGTGCTTTGGGAAATGTA GAGACCCTGTTCAGCCATTTTGAATCACTCGTTTGGCTGAACAATGATGCTGTTTGTTGATGTAATAACAACAATCAAGC CTTATCCCTCTGGTTGAAATTGGTTAATGGATTAGTTGATGTCATTAGATTTTATTGAAAACAAATTGTCTGAACTCCAT TTAGAGCAAGGTCATTTTGATATTCTCCTCAAGTTTTCTTATATCTTTCTCTTCTGGTCCTTGAAATGTTTGTTAAATTG TTTGTTGTGAAGCTAGCTCTGATATCGAATACCTTGAATATCATGTTTTGTTTACAACAAGCAAGTCATAATATGTGCAT TTTTCCATTGATTGACATTGTTCATTCGTTATCTGAACAGGGATTTATGGTCATGTTAGTTTATTGTGTATAAATATATA CATGCATTCTCTTCCTTCGTTTTTCATGTCTATTTACCAGCCTTGATAACCAAGATGTGAGCTTTCTTATGATATTAGTT TGCAAGAAGCTCAGAAGAGGATGAAGATAAAGAAACCACCTCACATCTTGGTCATCCATCTTAAGCGGTTTAAATACATG GAACAGCTGGGCCGGTACAAGAAGCTGTCTTACCGAGTTGTTTTCCCGCTTGAGCTGAAGTTGAGCAACACTGTTGAAGA TGCAGATATTGAGTATTCTCTATTTGCAGTAGTTGTCCATGTCGGGAGTGGGCCCAACCATGGCCATTATGTCAGCCTCG TGAAGAGTCATAACCACTGGTTATTTTTTGATGACGAAAATGTTGAGATGATTGATGAGTCTGCTGTGCAAACGTTCTTT GGATCAGCACAGGAATATTCTAGCAACACAGACCATGGTTACATTTTGTTCTATGAGACCCTTGGTGACAAGAACTAG
CDS sequence (LotjaGi4g1v0396700.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGCTACGGGCTCCAAGCTTGAGAAGGCTCTTGGCGATCAATTCCCTGAAGGAGAACGTTACTTCGGCCTTGAGAA TTTCGGCAACACTTGTTATTGCAACAGTGTTTTGCAGTATTATGGAAATAACAAAAGCATAGGGGATCCGGAAGAAAATC TTTTGACTTGCTTAGCTGACTTATTTTCACAGATAAGTTCCCAGAAGAAGAAAACAGGTGTCATTGCTCCCAAACGATTT GTACAGAGGTTGAAGAAACAGAATGAACTCTTCCGTAGCTATATGCACCAGGATGCACATGAGTTCTTGAACTTTTTGCT GAATGAACTTGTCGACATTCTGGAGAAAGAGGCTCAGGCTGCAAAAACTGATCCAGATACATCACCACCTTCTGAAAAGG TTGCCAATGGGTTCAAGAATGGTCATGTTAATGGTGGTCAGAAAGAGCCGTTAGTTACTTGGGTACACAAAAATTTTCAG GGAATACTCACCAACGAGACAAGATGCTTGCAATGTGAAACGGTTACAGCCAGAGATGAAACATTTTTTGACTTGAGCCT TGATATTGAGCAAAACAGTTCAATTACAAGCTGCTTGAAAAATTTCAGTTCCACTGAGACATTGAATGCTGAGGACAAAT TTTTCTGTGACAAATGCTGCAGTTTGCAAGAAGCTCAGAAGAGGATGAAGATAAAGAAACCACCTCACATCTTGGTCATC CATCTTAAGCGGTTTAAATACATGGAACAGCTGGGCCGGTACAAGAAGCTGTCTTACCGAGTTGTTTTCCCGCTTGAGCT GAAGTTGAGCAACACTGTTGAAGATGCAGATATTGAGTATTCTCTATTTGCAGTAGTTGTCCATGTCGGGAGTGGGCCCA ACCATGGCCATTATGTCAGCCTCGTGAAGAGTCATAACCACTGGTTATTTTTTGATGACGAAAATGTTGAGATGATTGAT GAGTCTGCTGTGCAAACGTTCTTTGGATCAGCACAGGAATATTCTAGCAACACAGACCATGGTTACATTTTGTTCTATGA GACCCTTGGTGACAAGAACTAG
Protein sequence (LotjaGi4g1v0396700.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGATGSKLEKALGDQFPEGERYFGLENFGNTCYCNSVLQYYGNNKSIGDPEENLLTCLADLFSQISSQKKKTGVIAPKRF VQRLKKQNELFRSYMHQDAHEFLNFLLNELVDILEKEAQAAKTDPDTSPPSEKVANGFKNGHVNGGQKEPLVTWVHKNFQ GILTNETRCLQCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKPPHILVI HLKRFKYMEQLGRYKKLSYRVVFPLELKLSNTVEDADIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMID ESAVQTFFGSAQEYSSNTDHGYILFYETLGDKN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 349 | 349 | 1.1E-192 | – | |
| PANTHER | 1 | 349 | 349 | 1.1E-192 | – | |
| Gene3D | 1 | 349 | 349 | 1.0E-116 | – | |
| SUPERFAMILY | 21 | 347 | 327 | 4.32E-87 | ||
| ProSiteProfiles | 23 | 349 | 327 | 57.871 | ||
| Pfam | 23 | 346 | 324 | 1.5E-52 | ||
| ProSitePatterns | 24 | 39 | 16 | - | ||
| CDD | 24 | 347 | 324 | 0.0 | – | |
| MobiDBLite | 119 | 145 | 27 | - | – | |
| ProSitePatterns | 280 | 298 | 19 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Ubiquitin-dependent protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. | ||
| Biological process | Protein deubiquitination | The removal of one or more ubiquitin groups from a protein. | ||
| Molecular function | Thiol-dependent ubiquitinyl hydrolase activity | Catalysis of the thiol-dependent hydrolysis of an ester, thioester, amide, peptide or isopeptide bond formed by the C-terminal glycine of ubiquitin. |
Expression pattern of LotjaGi4g1v0396700.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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