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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0396700 |
| Transcript ID | LotjaGi4g1v0396700.5 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ubiquitin carboxyl-terminal hydrolase; TAIR: AT4G39910.1 ubiquitin-specific protease 3; Swiss-Prot: sp|O24454|UBP3_ARATH Ubiquitin carboxyl-terminal hydrolase 3; TrEMBL-Plants: tr|A0A072TTI7|A0A072TTI7_MEDTR Ubiquitin carboxyl-terminal hydrolase; Found in the gene: LotjaGi4g1v0396700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:77457554..77461151) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGTGCTACGGGCTCCAAGCTTGAGAAGGCTCTTGGCGATCAATTCCCTGAAGGAGAACGTTACTTCGGCCTTGAGAA TTTCGGCAACACTTGTTATTGCAACAGTGTTTTGCAGGTCTTCAATCCAATCCGATTCACTCTTTTCTCGTTTTTCATTT GTTTATTTTTCTGCATCCAATCAATGGGGTGGTTGTCTTTGCTTAATTCTATGGTTTGTTGATTATGGTGAATGTATTTT GTTGTTTTGGATGTTCTGTTGACTTGTTTTGCTGAATTTTGAAGTGCTTGATTATCGAATCGGTATAGGGATTTAGCATC AACGGTTTTTTGTAATAATAATGATTAGTATTAAAGTCTAGAGTTGAAATTGCTGTTCAATCTTTTCTCTGTGGCATTCA ATTGTATTATCGGTGATAGGTAAATGCACGTGTCAATTCGTTGCTAGGTATGAGTCATGACCTTGATGAGAAGATGTAGT AAAAGCTATTACCCTGTGGATGATGTCAATGCATTTGACCTCTCTAGTGATAGTGTTTGAGAATGGGTGTGTTTATTATT TTCCGGCAAAATTTTAAGGGTTGGTCACTAACAAGTTATTCAATTTGCCACCTTCCGCAGGCACTATACTTCTGTGTGCC ATTTCGGGAACAACTGCTGGAGTATTATGGAAATAACAAAAGCATAGGGGATCCGGAAGAAAATCTTTTGACTTGCTTAG CTGACTTATTTTCACAGGTAATTAGTCTGTACTCGGTAGTCAGGAAACTGCTTGGCATTACATTTTAGTGCCATTAAGCT TTGACATATTTGACTGGCTAAAGCATGATTCTCCATTGGAGAGTATGTATTGTCTTCGCTAACTGTGGCTACGGTGCATT ACCCATGCCTCAGGAATGGCTTCAAGCTATTTTCAGTGTGGTTTTGTAAATTTTTCCATTTTGTCTATATCTAATTATCT AAGGAAATTTTGTTCAACTTATTGTTTCAAATGTCCATTTAATGGCACTTACTTGAATAACTCGTACTTATACCCAAGAA ATTGGTTCAAGGTATTTGTGGTGTGTTTTATGAGAGTATTTTATGATGAATCAATTTTTCCAAATGTTGCCTTGAAACAG ATGTAAGTTTGATGGCACTTACATGCCTATTTCGTTCTTGGTTATGAATTTACGTTCTATTTATTTTTTGGTATAGATAA GTTCCCAGAAGAAGAAAACAGGTGTCATTGCTCCCAAACGATTTGTACAGAGGTTGAAGAAACAGAATGAACTCTTCCGT AGCTATATGCACCAGGTATGTGCTTAAGTCTAGAATGAGCTTCTTGTACAGGTGATATTCCTAAAGTCTGAACATGTACC CTTTAAATATGATTTTTGTTAACTATTATATGCCCTTTGGGAAACATAATCTTTTAAATCAGCTTTTCCATAGGCAGCAA TCCCATATCGCTTTGTCATAGTGGGCAATTACTCTATCATGTTTGCTCATACTTTGACTGTATATCTCTGGTATACAAAT GGTGATTCTTCTTTTTCTGCGAGGAAATAAAAATAGTGTTTCTGATGATAGATGTTTGTTTAACAAGTGATTTTAACTTA GTTTGTACAATGACAAATTGTTACTTTCAAATGAGATTGTATATCTCAATTGTTTACTTAAAATGTTATTGGACCATGTA AGCTTATTCATTATTATGATACTATCATTGATTGTTTATTGTTGGTTAAACTTAATGTTCTTTGGGTGGACAACGTATGT CTCTTATTTTGTCTTAGTTTTTCGTTAGAAACAACATTTCTCATTATTGGTATTCTCTTTGTGATAGGATGCACATGAGT TCTTGAACTTTTTGCTGAATGAACTTGTCGACATTCTGGAGAAAGAGGCTCAGGCTGCAAAAACTGATCCAGATACATCA CCACCTTCTGAAAAGGTTGCCAATGGGTTCAAGAATGGTCATGTTAATGGTGGTCAGAAAGAGCCGTTAGTTACTTGGGT ACACAAAAATTTTCAGGTGACCTTGCATTGCCAATTTAATGTTTTCATTTTGCATATTGCTTGCGAAAGAATTTGGAGGG ACCAACATTTTGACCTTTGTATCGGATCCAGTCAATTGATGTTCTCCTTTAAGTGCGCATGTCTTTGTAACTACCAGTTT GGGCTTATCCATTCATGTTTGCTTTTACCTGAATTATTATGGAGATCAGCACATTATCTGAGATTCTAATGTGCTTATTT TTTCTTGTTTAATTTTATATTATGAACTTTAGTATCACACTTGATAAAACTAAAGTAATAGTAATTTTGCATTGGTCAGA TCTTATATATTGTTTTTTCTTTTGTGAGGAGGTGCTTGACGTTACTCTTTCTCTGTTTTGATCGCAAAAATTAAGATTTA TTTCTACTTTGCGGAATTTCATTGTTGGTACTTGTGGTTAGGGAATACTCACCAACGAGACAAGATGCTTGCAATGTGAA ACGGTTACAGCCAGAGATGAAACATTTTTTGACTTGAGCCTTGATATTGAGCAAAACAGTTCAATTACAAGCTGCTTGAA AAATTTCAGTTCCACTGAGACATTGAATGCTGAGGACAAATTTTTCTGTGACAAATGCTGCAGGTATATCGCTTTTAGAC AATCTTATTTCTATAATTACATGAGTACTTCTTTTCTGTGTTAGCTATTACTTGGTTTCTTTAGTGCTTTGGGAAATGTA GAGACCCTGTTCAGCCATTTTGAATCACTCGTTTGGCTGAACAATGATGCTGTTTGTTGATGTAATAACAACAATCAAGC CTTATCCCTCTGGTTGAAATTGGTTAATGGATTAGTTGATGTCATTAGATTTTATTGAAAACAAATTGTCTGAACTCCAT TTAGAGCAAGGTCATTTTGATATTCTCCTCAAGTTTTCTTATATCTTTCTCTTCTGGTCCTTGAAATGTTTGTTAAATTG TTTGTTGTGAAGCTAGCTCTGATATCGAATACCTTGAATATCATGTTTTGTTTACAACAAGCAAGTCATAATATGTGCAT TTTTCCATTGATTGACATTGTTCATTCGTTATCTGAACAGGGATTTATGGTCATGTTAGTTTATTGTGTATAAATATATA CATGCATTCTCTTCCTTCGTTTTTCATGTCTATTTACCAGCCTTGATAACCAAGATGTGAGCTTTCTTATGATATTAGTT TGCAAGAAGCTCAGAAGAGGATGAAGATAAAGAAACCACCTCACATCTTGGTCATCCATCTTAAGCGGTTTAAATACATG GAACAGCTGGGCCGGTACAAGAAGCTGTCTTACCGAGTTGTTTTCCCGCTTGAGCTGAAGTTGAGCAACACTGTTGAAGA TGCAGATATTGAGTATTCTCTATTTGCAGTAGTTGTCCATGTCGGGAGTGGGCCCAACCATGGCCATTATGTCAGCCTCG TGAAGAGTCATAACCACTGGTTATTTTTTGATGACGAAAATGTTGAGATGATTGATGAGTCTGCTGTGCAAACGTTCTTT GGATCAGCACAGGAATATTCTAGCAACACAGACCATGGTTACATTTTGTTCTATGAGACCCTTGGTGACAAGAACTAG
CDS sequence (LotjaGi4g1v0396700.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGCTACGGGCTCCAAGCTTGAGAAGGCTCTTGGCGATCAATTCCCTGAAGGAGAACGTTACTTCGGCCTTGAGAA TTTCGGCAACACTTGTTATTGCAACAGTGTTTTGCAGGCACTATACTTCTGTGTGCCATTTCGGGAACAACTGCTGGAGT ATTATGGAAATAACAAAAGCATAGGGGATCCGGAAGAAAATCTTTTGACTTGCTTAGCTGACTTATTTTCACAGATAAGT TCCCAGAAGAAGAAAACAGGTGTCATTGCTCCCAAACGATTTGTACAGAGGTTGAAGAAACAGAATGAACTCTTCCGTAG CTATATGCACCAGCTTATTCATTATTATGATACTATCATTGATTGTTTATTGTTGGTTAAACTTAATGTTCTTTGGGTGG ACAACGATGCACATGAGTTCTTGAACTTTTTGCTGAATGAACTTGTCGACATTCTGGAGAAAGAGGCTCAGGCTGCAAAA ACTGATCCAGATACATCACCACCTTCTGAAAAGGTTGCCAATGGGTTCAAGAATGGTCATGTTAATGGTGGTCAGAAAGA GCCGTTAGTTACTTGGGTACACAAAAATTTTCAGGGAATACTCACCAACGAGACAAGATGCTTGCAATGTGAAACGGTTA CAGCCAGAGATGAAACATTTTTTGACTTGAGCCTTGATATTGAGCAAAACAGTTCAATTACAAGCTGCTTGAAAAATTTC AGTTCCACTGAGACATTGAATGCTGAGGACAAATTTTTCTGTGACAAATGCTGCAGTTTGCAAGAAGCTCAGAAGAGGAT GAAGATAAAGAAACCACCTCACATCTTGGTCATCCATCTTAAGCGGTTTAAATACATGGAACAGCTGGGCCGGTACAAGA AGCTGTCTTACCGAGTTGTTTTCCCGCTTGAGCTGAAGTTGAGCAACACTGTTGAAGATGCAGATATTGAGTATTCTCTA TTTGCAGTAGTTGTCCATGTCGGGAGTGGGCCCAACCATGGCCATTATGTCAGCCTCGTGAAGAGTCATAACCACTGGTT ATTTTTTGATGACGAAAATGTTGAGATGATTGATGAGTCTGCTGTGCAAACGTTCTTTGGATCAGCACAGGAATATTCTA GCAACACAGACCATGGTTACATTTTGTTCTATGAGACCCTTGGTGACAAGAACTAG
Protein sequence (LotjaGi4g1v0396700.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGATGSKLEKALGDQFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLEYYGNNKSIGDPEENLLTCLADLFSQIS SQKKKTGVIAPKRFVQRLKKQNELFRSYMHQLIHYYDTIIDCLLLVKLNVLWVDNDAHEFLNFLLNELVDILEKEAQAAK TDPDTSPPSEKVANGFKNGHVNGGQKEPLVTWVHKNFQGILTNETRCLQCETVTARDETFFDLSLDIEQNSSITSCLKNF SSTETLNAEDKFFCDKCCSLQEAQKRMKIKKPPHILVIHLKRFKYMEQLGRYKKLSYRVVFPLELKLSNTVEDADIEYSL FAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYETLGDKN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 116 | 116 | 3.4E-205 | – | |
| Gene3D | 1 | 387 | 387 | 4.7E-117 | – | |
| PANTHER | 1 | 116 | 116 | 3.4E-205 | – | |
| SUPERFAMILY | 20 | 385 | 366 | 4.51E-86 | ||
| Pfam | 23 | 111 | 89 | 5.3E-18 | ||
| ProSiteProfiles | 23 | 387 | 365 | 55.51 | ||
| ProSitePatterns | 24 | 39 | 16 | - | ||
| CDD | 24 | 385 | 362 | 1.61628E-179 | – | |
| PANTHER | 133 | 387 | 255 | 3.4E-205 | – | |
| PANTHER | 133 | 387 | 255 | 3.4E-205 | – | |
| Pfam | 134 | 384 | 251 | 1.1E-35 | ||
| MobiDBLite | 159 | 183 | 25 | - | – | |
| ProSitePatterns | 318 | 336 | 19 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Ubiquitin-dependent protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. | ||
| Biological process | Protein deubiquitination | The removal of one or more ubiquitin groups from a protein. | ||
| Molecular function | Thiol-dependent ubiquitinyl hydrolase activity | Catalysis of the thiol-dependent hydrolysis of an ester, thioester, amide, peptide or isopeptide bond formed by the C-terminal glycine of ubiquitin. |
Expression pattern of LotjaGi4g1v0396700.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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