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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0400300 |
| Transcript ID | LotjaGi4g1v0400300.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Aminotransferase; TAIR: AT2G22250.2 aspartate aminotransferase; Swiss-Prot: sp|E9L7A5|PAT_PETHY Bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase; TrEMBL-Plants: tr|I1KT56|I1KT56_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0400300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:77774742..77778042) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCCAACACGCTGTACAACGCCACCACATGCCGAATCCCTATCGGCGGCGACCACCAATGTCTCGCCGTAAATCGCAA CGTCTCCAGATCCCTCTCCTTCTGCTCAAACCTTACCACGCTTCCTCTCAAGTGAGTCCTTCTTCCAATTTCACTCCCTC ACTCTCTTCTTTCATCAATAATATTTCTGGGTTTTCATTGCAGAGCAATGGAGTTTAACGCGGGGAATCATTCAGGGGCA ATAACGGTGGTGAAGGCTGCGAAATCCGATTTTGATGAAAGGGGCATTGACATTTCATTGAGCCCACGAGTCAACGCTGT GAAGCCGTCCAAGACCGTCGCCATCAGCGACCAAGCCACCGCTCTCGTCGAAGCTGGCGTTCCCGTGATTCGATTGGCGG CTGGAGAGCCTGATTTTGACACACCTGCTGTCGTAGCTGAGGTCAACGCTCTTCGCATTCTACTTTTCATTTGTAGAAAT CTGTTTTTTATGCCCCTTTTTTTGTGTTGATTTTGTAATGGCTTTTTTGGATAGGCTGGGATCAATGCAATTCGTGAAGG GTACACGAGGTACACCCCGAATGCCGGAACGTTAGAGCTACGTCAAGCAATTTGTCATAAGCTGAAGGGTTAGTGTGATG ATGATTATAGTATATGCTTTTCTTTGTTGATTGTGAGAGATGGGGTTTTGACTATATGTTAGATGAATTGTTGTTGCAGA GGAGAATGGGATTACTTATACTCCTGATCAGGTTGTGGTTAGTAATGGAGCCAAGCAGAGTATTGCTCAGGCAGTGCTTG CAGTTTGCTCTCCAGGAGATGAGGTGAGTAAAGTGGGCTAGTTTATACTCATAAGCATAAGCATTAGACTAAACGGGCTT AGTTTATACTCATAAGCTTTAGAAAATACTACTTAATGTGTGTTTGAATACCAGTTGAGTTAATGTGAAAGAACTTTCAT CCCAATCTGTAGTGTTCCGTTCACTTTTTGCCTCAAAGTGAGTGCTAATGTCTTTTACCATTGACGCCAATGATTGTCCA ATCGTAGCCGCATGCGAAGTCATTTGGGTTGGGTATGAACTGTGCAGGGATACTTTAATTGGAACAAAGTCATTTGAATT ATTCAAACTCTTTATGTTTTGCCATTATCCTTGATGTGTTAGAAAGTTCTCGTGATGATTGTGCTCACCTTTGGATGCCA TCTTGTATATGTTTGTAGATTTTGGCATTATCATTCTGAAATATGCCTGAACTTATTGACATGCCTTGTTTGTTCAAAAG ATTCAACAACTCTGGCCTTTTATTTTCTCAAGCCTTTGCTGCATCTTTTATTCCTCTGTTAGTCTGTTTTATCACTTTAT CAGATATTATGGGTCTAGTGAGCCTTGTGCTTACTAGGGTAAAAATTATGCAAATAAAAAAGCCACTCCATGCTGTCCAC ATATTCCCATGCATAAAAATGTGTCTTGATTTGTATTTGGACAAATTATTGCATATTTTTCCTTTTGCTCACTATGGTGT GAATATTTCAGGTCATAATTCCAGCTCCTTTCTGGGTTAGTTACCCAGAAATGGCAAGGATGGCTGATGCAACACCTGTG ATTCTTCCAACCTCAATATCTGATAATTTCCTATTGGATCCCAAACGCCTTGAATCCATAATTACTGAGAAATCAAGACT GCTTATTTTTTGTTCACCATCAAACCCAACAGGATCCGTCTACCCCAAGAAATTACTTGAAGAGATAGCCCAGATTGTAG CAAAGTACCCAAGGCTTCTGGTACAGTCATACATTCGGAACGAGTTCACAAATGCAACTTAGATTACAGTTCCTTGCTTT TAAAACCTTAAAAAAATTTATGCAGGTTATCTCTGATGAAATTTATGAAAACATCATCTATGCACCAGCAACACATACTA GCTTTGCATCTCTACCAGGAATGTGGGACAGAACACTAACTGTGAATGGATTTTCTAAGGTTAGTCTTTATGTCATGTTC TCTTTCTGTGAGAGTTGTATCTACTAATCCTCCCTACCCCAGAAAAAAAACCTTGTTCCTATAACTTATTTGACTTGTTT TTGGTGTTTGTGTTGTTGATTCCTCGTTCCTCTTTTCTACTCAATGCCTGTGCTGTATTTCATAGTATGGTTATAAATGA TGACATTGTGACCTTTGAATTGGATTCCTGATGCTTTAAACTATTTCACTGTAGTCCTTTGCAATGACTGGTTGGCGGCT TGGATACATCGCTGGTCCAAAACATTTTGTTGCAGCATGTGGAAAGATACAAAGTCAGGTATGCTGCAGTTTTAATTTGC CACTCACGCCAGTCTTATTCCATATCGTTCCTATCTTCATTACCTTTAGCTTTAAGAAACTTTTTAGCATTCATTTGAAA TGAGTTAGTGTACTGATGCTATTTGATATTACACAGGATGTTCTGACTGATGCATTTTATTGATTTTAGTTCACTTCAGG AGCCAGTAGCATTTCGCAGAAAGCTGCTGTTGCTGCATTAGGACTAGGCTATGCTGGCGGCGAGGCTGTTTCTACCATGG TGAAAGCATTTAGGGAGCGAAGGGATTTCTTGGTTAAAAGTTTTGGAGAGATCGAAGGTGTTAAAATATCAGAACCCCAG GTGCAAATTCATTTATTTTATTTGCTTATTCCCTAATAGTTATTCTCTTTTTGTTTTGTCTCTTCCTCTTCCCATCTGCT TTTCCACTCATAAATTTATACTTTCTTTCCCTTTGCAGGGAGCATTCTATCTATTCATTGATTTCAGCTTCTGCTATGGA AGAGAAGCTGAAGGATTTGGCAAAATTGAGGATTCTGAATCCCTCTGTCGATATCTGCTGGATAAAGGCCAGGTATACTC AAGATTCTAGGGATAGTTTATGAGCAGGAAAAGTTCGAAGTCAAGAAAGAATTAAAGAACAACTGTTATTCGCAAAAATG ATTTTCTCTTTTTAAAGTGCAACAACGACTGAAAAAATGATTATGGTTAGACATCCTTTGGCCAATGCAAACAGACGCTA TTACGTATTTCAAGACAAAAAGTGAACGAACTCTTATGGATTATGATTAAAATCCGCTCACTTGTTGAACTTTCGATGTC TCATAATTGAGTATTTCGGTATTTCTGTTTTGGCTTACAGGTAGCACTGGTGCCCGGAAGTGCTTTCGGAGATGATACTT GTGTTCGCATCTCTTATGCAGCATCCCTTACTACCCTACAGGCTGCTGTAGAGAGGATTAAGAAAGCTCTTATCCCTCTA AGCTCAGCTGCACTTGTTTAA
CDS sequence (LotjaGi4g1v0400300.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCGAATCCCTATCGGCGGCGACCACCAATGTCTCGCCGTAAATCGCAACGTCTCCAGATCCCTCTCCTTCTAGCAAT GGAGTTTAACGCGGGGAATCATTCAGGGGCAATAACGGTGGTGAAGGCTGCGAAATCCGATTTTGATGAAAGGGGCATTG ACATTTCATTGAGCCCACGAGTCAACGCTGTGAAGCCGTCCAAGACCGTCGCCATCAGCGACCAAGCCACCGCTCTCGTC GAAGCTGGCGTTCCCGTGATTCGATTGGCGGCTGGAGAGCCTGATTTTGACACACCTGCTGTCGTAGCTGAGGCTGGGAT CAATGCAATTCGTGAAGGGTACACGAGGTACACCCCGAATGCCGGAACGTTAGAGCTACGTCAAGCAATTTGTCATAAGC TGAAGGAGGAGAATGGGATTACTTATACTCCTGATCAGGTTGTGGTTAGTAATGGAGCCAAGCAGAGTATTGCTCAGGCA GTGCTTGCAGTTTGCTCTCCAGGAGATGAGGTCATAATTCCAGCTCCTTTCTGGGTTAGTTACCCAGAAATGGCAAGGAT GGCTGATGCAACACCTGTGATTCTTCCAACCTCAATATCTGATAATTTCCTATTGGATCCCAAACGCCTTGAATCCATAA TTACTGAGAAATCAAGACTGCTTATTTTTTGTTCACCATCAAACCCAACAGGATCCGTCTACCCCAAGAAATTACTTGAA GAGATAGCCCAGATTGTAGCAAAGTACCCAAGGCTTCTGGTTATCTCTGATGAAATTTATGAAAACATCATCTATGCACC AGCAACACATACTAGCTTTGCATCTCTACCAGGAATGTGGGACAGAACACTAACTGTGAATGGATTTTCTAAGTCCTTTG CAATGACTGGTTGGCGGCTTGGATACATCGCTGGTCCAAAACATTTTGTTGCAGCATGTGGAAAGATACAAAGTCAGTTC ACTTCAGGAGCCAGTAGCATTTCGCAGAAAGCTGCTGTTGCTGCATTAGGACTAGGCTATGCTGGCGGCGAGGCTGTTTC TACCATGGTGAAAGCATTTAGGGAGCGAAGGGATTTCTTGGTTAAAAGTTTTGGAGAGATCGAAGGTGTTAAAATATCAG AACCCCAGGGAGCATTCTATCTATTCATTGATTTCAGCTTCTGCTATGGAAGAGAAGCTGAAGGATTTGGCAAAATTGAG GATTCTGAATCCCTCTGTCGATATCTGCTGGATAAAGGCCAGGTAGCACTGGTGCCCGGAAGTGCTTTCGGAGATGATAC TTGTGTTCGCATCTCTTATGCAGCATCCCTTACTACCCTACAGGCTGCTGTAGAGAGGATTAAGAAAGCTCTTATCCCTC TAAGCTCAGCTGCACTTGTTTAA
Protein sequence (LotjaGi4g1v0400300.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPNPYRRRPPMSRRKSQRLQIPLLLAMEFNAGNHSGAITVVKAAKSDFDERGIDISLSPRVNAVKPSKTVAISDQATALV EAGVPVIRLAAGEPDFDTPAVVAEAGINAIREGYTRYTPNAGTLELRQAICHKLKEENGITYTPDQVVVSNGAKQSIAQA VLAVCSPGDEVIIPAPFWVSYPEMARMADATPVILPTSISDNFLLDPKRLESIITEKSRLLIFCSPSNPTGSVYPKKLLE EIAQIVAKYPRLLVISDEIYENIIYAPATHTSFASLPGMWDRTLTVNGFSKSFAMTGWRLGYIAGPKHFVAACGKIQSQF TSGASSISQKAAVAALGLGYAGGEAVSTMVKAFRERRDFLVKSFGEIEGVKISEPQGAFYLFIDFSFCYGREAEGFGKIE DSESLCRYLLDKGQVALVPGSAFGDDTCVRISYAASLTTLQAAVERIKKALIPLSSAALV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 18 | 18 | - | – | |
| Phobius | 1 | 43 | 43 | - | – | |
| Phobius | 19 | 25 | 7 | - | – | |
| Phobius | 26 | 43 | 18 | - | – | |
| PANTHER | 39 | 460 | 422 | 5.6E-222 | – | |
| PANTHER | 39 | 460 | 422 | 5.6E-222 | – | |
| Phobius | 44 | 460 | 417 | - | – | |
| SUPERFAMILY | 57 | 451 | 395 | 4.54E-114 | ||
| Gene3D | 80 | 447 | 368 | 1.0E-132 | ||
| Pfam | 85 | 447 | 363 | 1.3E-72 | ||
| CDD | 87 | 449 | 363 | 3.61123E-113 | – | |
| Gene3D | 116 | 338 | 223 | 1.0E-132 | ||
| ProSitePatterns | 288 | 301 | 14 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Biological process | Biosynthetic process | The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones. | ||
| Molecular function | Pyridoxal phosphate binding | Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6. |
Expression pattern of LotjaGi4g1v0400300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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