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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0401100 |
| Transcript ID | LotjaGi4g1v0401100.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribosome biogenesis protein TSR3-like protein; TAIR: AT5G10070.2 RNase L inhibitor protein-like protein; Swiss-Prot: sp|Q5HZH2|TSR3_MOUSE Ribosome biogenesis protein TSR3 homolog; TrEMBL-Plants: tr|I1KT68|I1KT68_SOYBN Probable ribosome biogenesis protein GLYMA_08G139500; Found in the gene: LotjaGi4g1v0401100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:77860595..77864637) extracted from Lotus japonicus Gifu genome v1.2.
GAGATGGTATTAGTAATTTTACCCTAAACCTAGCTTTAGGTTGCAGCCATCACCATTCACCAACACACTTGAGCAGAATC ACACCTTCACACCACACAAATGGGCAATAACAAACAACAAAGATTCAGAACTCACCGCCAAAATCACGCTCAATCAAGTC GACACCAACAACAACAACAACTCTCACTGTAACTTCTTTCCCAATTCTTCTTCTTCTTCTCAATTTCGTTTTTTGCTTGT TTACATCTATCTATCTAACTACCTTTCTTCTTCAGTGAGGATGATTCTCAAACCTCTCTTCCAGGTTCTATTCGATTCCT CTTGTTTTCCCCAAATCCCAAAACATGTTTTACTTGTTTTTTCTTCTAACTGCAGAGTCTGGTGAGCATCAAGAGGAGCT CACAACACCCAAAATAAAGCTTGCAATGTGGGTATGCATGCATATTAACGTTTTGCTAATTCTCAATATAACTAACTAAG CTTTTTTATTTTTCATCATCAATTTTTATTAGTTTTTGTTGCATTAAACCTTGGAAGATTCTATTGTGCCAAACTAAACA CTTCAATGCTTGTTTCTGTTTGAAATCGAGTGATGATGCATTTTATGATTTTACACCTCTGATGGTGATTCTGTGATATT GATGATTGATTTTAAGCTACTAACTTCAATTTATTTATTTTTTTGTGGGTTGATTTTTATCCAAATTTGAAGTAAATAAT CAGTTGGAATTAGAAAAAATTAGCGAGAAACTCTATGAGCAAAAGTTCCTTTGGTTCTGTGTAGTATTACTAATATATGC CATCACTGAATTTAGGTCTGACATTTGACATGCATGGTGTTGTTTCAGGATTTTGGGCAATGCGATGCCAAAAAGTGCAC AGGACGCAAGCTTTCAAGATTTGGCATGCTAAAAGCAAGTATTTGTTATCTACTTTCTTCATTCTCTGATTACTTTTTAC ATATAATTAGGTGTACAAATATGTTGGTATAAGCATGAGTGTATAAATACATAAGTATGCATGCATTGCATATATATATA TTGTATCTGGGTTAATTGGATTCTAAGTGCCATTTCAGTTCACGATCAGGTTATTGCTTTCCTATATCATGTAAAAGAAT AACTATTTGTGAATGTTAATTCTCAAATCAAAATACAAAATGGTTTTGACTGCTAGGGGTAACAACAAATTCATTGGTTA AAGTTAGTTGCATAATACTGGAAGACCATATTTGATATCGAAGCATCTAATTCAAGTTCTTCATAGGAGTCATCTAAGGC CTCTTAAACTGCATATGTAACAGTAATACTAAACAATAAATTATTGGAAAGATAAGAGTTAATACAGTGAAAAGGAAGAG CATTTCGTAATTGAAATATAAAGAGGCATTTCCAAGAAAAACAACTTCAATAAGATGAATGATCCTTTTAAATTCTAATT TTTTTAAATAGGGAGGAAAGCTTTTGATGGCAAGGAAGCATAAAATAGAAGCCTTTGCTTAAACTAATAAATGAGTAAGC ATCTAGAGTTTTTGTAATGCCACAAGTGCTTTTGTCTGTGGTAATTACTTGCTGCTGTGACCCATCAAGATACTGTAATA TCTGTATATGGTACTTTAATAGCTTGGGTTGTATTACAAACTCTTGGGACAAAATCTAGTGATGTTATATCACAAAAAAT GATGCTATAGTATAAAAGGTTGGTTAATGTTTGTCTGTTTGTGTATGTGTGCTTAGAAAGCAGAAGAAATACTTAATTTG TTCCTCTTTGTTATTGTTGATTCTGCACTCTATGAAAGCCTACTCGCACTATTTAAAAAATGCTTAACATGTTCGTAATC CGGATTTTGATCAATTTTGTGCAGGAATTACGCGTGAGTAATGGATTTGGGGGAATTGTTTTAAGGTACTTGGTCATAAA CTATCTTTCTTTTCACTATATGTTGAAACAATGTATATTTTTTTTCCTGAGAAACCCGTTATCTCGATATTGTAGTATAA AATGTCAAGAAGTTATTGTATTGTTATTATTTACTGTAACTCTTTTTTGACAGTCCTGTTGGAAAGTCATGTGTCTCAAG AGAAGATTACTCTTTAATCCAGAACAAAGGACTGGCTGTAGTGGATTGCTCATGGGCACGCTTAGATGACGTACCTTTTG TGAGGCTGCGGTGCAGTGCTCCTCGTCTGTGTATGAACTTAGCCACCAACAAGAATATATTCAAATTTCATTTTATATTC TTGAATTACATGCTTATTAAATTATGTTCTTTTTAAACTTTAGTGTATGAGAACATCATGCTTGATGTAGACGTCCATGC TTGAGTCTTTTTGCTCTGTTTAGAGGTTGCCTCATTTGACGTGGAATGCGATTATTAGATTTTTTGTTAATATTTTCTGT TTACTGCAGTGCCATGGCTTGTTGCAGCAAATCCAATAAATTATGGCCGGCCATGTCAGCTATCTTGTGTAGAGGCCTTA TCTGCTGCTTTGATAATATGGTACCAAAATAGCATTATCTGTAGACTAGATGATTTCTTTGTTTTTGGTGTGTTTCTATC CATGCATGCGCCTCACCCCCCAAAAAATTGTAACTGTAATTTGGTGTCTGGTTTGTTTTATGTTTGCTGCTGCTAGTCTA CCACCGCTAGGAATGTGCTTGTCAGATCAGGCTATCACCTAAGGTCTTTATAGATGGAACATTTGACTGAAAAATTTAAG TCCAGACTTAATAATTGATTTTGCAGTTTGCAGCATGTGTATTTAATCATTTTTCTGTGATGGTTGGTTATTGAAACCTT ACACCACTGTTATATTTATTTGGATAAATATCTATTAGAAAAGGTTATCAAAGTTCATTAATGGAATAAACATTTGAATG AAATATATTTCTCTGTTCTCCATTGTTAAAGTTCTTTGCTATGGTCTTGCAGTGGAGAAGAAGAAACAGCAAATCTATTG CTTAGCAAGTTCAACTGGGGTCATGCCTTTACGTCTCTGAATAGGTATGATTTGATTCATTCATGTAATTTTGGTATTTT CTTCCTCCGGTAGTTGATTGTATTCCATCTATAATTAAGAGATCAAGTGTGTAACCTAGCACAAAATTTCATTTTATTTT CTTCTGTAAATTTTTTTGTATCCATGAGATACTTAACTAAAATGGGATTCAATTAATTTTGATTTGCAATTGCATTTACA TACGGCATAAACTTTTCTAGATTCAAAACTTTCTGTTAATCAAAGCAGGGAATTATTGAAGGCCTACTCCAAATGTGAAA ATAGTGCTGATATTATATCTGTTCAAAATGCTTGGCTATCACAAGAGAGGCAGGTCCCAAGGGCTCCCGCTGATACTGAG GGTATGTTTAGGTTGTATTGTATTTTTTTCCACAATGAAAGCCGTATATAAATAATCTCAATAGAGGGCGACCAATGGCG CAATAGTAGCTTTGCTGCCTTATGACCTGGGTTGAAGATTTTTACCTACAAATACCTCTAATATATTGGGAATTATTCTC TAATGTGCTTTGTATTTTCTCATTTTGCATGGACAGTTGCGGTGACGGATGAAAATGAGGATAATATTGAAAACTCTTCA GATTCTGAAGATGGGCTTCCACCTCTTGAAAAGAATATGAATCATTTGAGCATTGACAATAGTGATGAAGAGAGCGAGTA GATTCATTCTAAATCTCTAACACAAGACATTTCTGTAACCATTGCTGCGATAGTGGAAGTATGAGGAAGATGTGTGCAAT GCAGCATTGCATTGGAGCAAAGCTTTTTGGCTAACAAAGAAATGTATTATTATCATGAGTGGCGGATAGTTCCTGTGTTT TCTTTTGTTTCTATTTATTCATAAAATAGTTAAATATATGAACATATGAAAGAGTGTCGGCAAGTAGTAAGCTATGCACC ACTTTCCCTCTCCAGGTTTTCAATGTGTGGTTTATTTATTAGCTTGGATTTTAGCTTACAATAGTCTGGCCTCAAAAGTC AAAATGGAACTTTTTTTATTTTTAATGTGAAAAGAAATTAAAA
CDS sequence (LotjaGi4g1v0401100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGCAATAACAAACAACAAAGATTCAGAACTCACCGCCAAAATCACGCTCAATCAAGTCGACACCAACAACAACAACA ACTCTCACTTGAGGATGATTCTCAAACCTCTCTTCCAGAGTCTGGTGAGCATCAAGAGGAGCTCACAACACCCAAAATAA AGCTTGCAATGTGGGATTTTGGGCAATGCGATGCCAAAAAGTGCACAGGACGCAAGCTTTCAAGATTTGGCATGCTAAAA GAATTACGCGTGAGTAATGGATTTGGGGGAATTGTTTTAAGTCCTGTTGGAAAGTCATGTGTCTCAAGAGAAGATTACTC TTTAATCCAGAACAAAGGACTGGCTGTAGTGGATTGCTCATGGGCACGCTTAGATGACGTACCTTTTGTGAGGCTGCGGT GCAGTGCTCCTCGTCTGTTGCCATGGCTTGTTGCAGCAAATCCAATAAATTATGGCCGGCCATGTCAGCTATCTTGTGTA GAGGCCTTATCTGCTGCTTTGATAATATGTGGAGAAGAAGAAACAGCAAATCTATTGCTTAGCAAGTTCAACTGGGGTCA TGCCTTTACGTCTCTGAATAGGGAATTATTGAAGGCCTACTCCAAATGTGAAAATAGTGCTGATATTATATCTGTTCAAA ATGCTTGGCTATCACAAGAGAGGCAGGTCCCAAGGGCTCCCGCTGATACTGAGGTTGCGGTGACGGATGAAAATGAGGAT AATATTGAAAACTCTTCAGATTCTGAAGATGGGCTTCCACCTCTTGAAAAGAATATGAATCATTTGAGCATTGACAATAG TGATGAAGAGAGCGAGTAG
Protein sequence (LotjaGi4g1v0401100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGNNKQQRFRTHRQNHAQSSRHQQQQQLSLEDDSQTSLPESGEHQEELTTPKIKLAMWDFGQCDAKKCTGRKLSRFGMLK ELRVSNGFGGIVLSPVGKSCVSREDYSLIQNKGLAVVDCSWARLDDVPFVRLRCSAPRLLPWLVAANPINYGRPCQLSCV EALSAALIICGEEETANLLLSKFNWGHAFTSLNRELLKAYSKCENSADIISVQNAWLSQERQVPRAPADTEVAVTDENED NIENSSDSEDGLPPLEKNMNHLSIDNSDEESE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 47 | 47 | - | – | |
| PANTHER | 3 | 271 | 269 | 7.3E-109 | ||
| MobiDBLite | 18 | 36 | 19 | - | – | |
| Hamap | 53 | 218 | 166 | 39.523 | ||
| Pfam | 54 | 84 | 31 | 2.6E-13 | ||
| Pfam | 91 | 217 | 127 | 1.0E-51 | ||
| MobiDBLite | 224 | 272 | 49 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0401100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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