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LotjaGi4g1v0405800.4

Overview

Field Value
Gene ID LotjaGi4g1v0405800
Transcript ID LotjaGi4g1v0405800.4
Related isoforms 6
Lotus japonicus genome version Gifu v1.2
Description 26S proteasome non-ATPase regulatory subunit 12; TAIR: AT5G09900.2 26S proteasome regulatory subunit, putative (RPN5); Swiss-Prot: sp|Q9FIB6|PS12A_ARATH 26S proteasome non-ATPase regulatory subunit 12 homolog A; TrEMBL-Plants: tr|I1K4U3|I1K4U3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0405800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:78210427..78215181) extracted from Lotus japonicus Gifu genome v1.2.

CTTCTTCTCGATCGATTCAATTCCAGATCTCACTCTGTTCTACTTCGTTTTCGTTAATTTCACTGTCAATTCTGCATAAC AATTGCTTCGTTTTGTTTATACTATTAGCATCTAGTTAGGGTTGTTAATTTTGTGTCTTCTCTGAACTGAAATTTCACGA TTCCGGTCACCGGAACTGATTATTCTACTGAAATCCTTTGCAGGCGAATTTAGATTCGGCGATAGAGCAATTGCTGAATG TGGAGAAGCAGATGAGGCTCGCCGGTGACGTTTCCGGCACCAGGAAAGCCGCCACCGACATTCTGAAGCTCTGCTTTGAT GCGCGAGCCTGGAAAACCCTAAACGACCAGATTGTCGTTTTGTCCAAACGTCGTGGTCAGCTTAAGCAGGTAACTCCATT GAAGAACCTATTAGTTTTACTTGAATCGCTTCTGTGTGCATAACGAGGTTGGGGTTTTAGTTCACTGGTTAAAAAATTGG GCGTTCTTTGTTCGTTTGGATTGGAAATTTGATTCATGATTATTTACATATGCATAGTAATTTCCTGTTAATGATTGGTA GAAATTTTGCTTAGAAAACCATGGGCATTGTGCTTGATTTGCGGTAACGAGTTAGAAAATGTATAGTTTCTTTATTTGAA ATATCCTCACTGGTTTTGATTTCACTATTTCTGAATAGTATGTGAGGACTTTTAGAATGTTACTCCTCTTTGCGTAGAGT TACATGGGATGAGGCTATAGATTCTTCAGTTCGTATATTATTATCTAGTTGCCTCGTAAATGGTAAGAGAAAGTGTGAAA CATAGTATCATCTGGTATTAACGAGCCTATTATATGCTCACAGGCTGTAACAGCAATGGTCCAGCAGGCTATGCAATATA TTGATGAGACACCGGACGTTGAAACTCGTGTAGAACTCATCAAAACATTGAACAGTGTATCTGCCGGGAAGGTGAGCTGT TGTGATGTCTGAAGTCTCTGCCCTGTTTTATAATCCTTCAGGGCTGTATATTTGTCTCATATGACGTATGTTTTATATGG TGTTTTCTATGTTAGATATATGTTGAGATTGAGAGGGCTAGGTTGATCAAGAAACTTGCAAAGATTAAGGAAGAACAAGG GCTTATAGCTGAAGCAGCTGATTTGATGCAAGAAATTGCGGTCAGTGCGCACGCGTCGTATTTTGATGGCTTTTATACTT TTGGTTTTTGGATTTGACAGTTTGTACAAGTTGCTTTCAGTTGACTTAAGTTGGGTGATCTTAACAGGTGGAAACTTTTG GTGCCATGGCAAAAACTGAAAAGATTGCATTCATCCTTGAACAAGTATGAGTCATTTTTCTCTTTGTTTCAGTTGTAACT GATAGAGATGGTAGACATTAATTTCTTCTGATGCAATTCAGTTGCTGATACGATAATAACTTCAAATTGTGTAGGTTCGT TTGTGCCTAGACCGACAGGATTATGTCCGGGCACAAATACTCTCAAAAAAGATTAGTCCAAGAGTGTTTGCTGTTGATGC ATCTAAGGAAAAGAAAAAGCCTAAAGATGGCGACAATCTTGTTGAAGAGGCTCCGGCAGATATACCATCTCTGCTAGAGT TGAAGCGGATCTATTATGAACTAATGATTCGGTAACTAATTCCTGCTTCTCGTTTTAATTGTATTTCTTACTCTATCATA ATGTGGCTTACCCTTGTTTATCTGTTACCTCCTTCAATTTATTTGGTATAATAAACTGAGTGTCTAACAGATGCTCAAAA TGATTCTAGTCTTGGGGCTTTCCTGTTTCAGTAACATTGAGGATATGTTTTGTTGCTAGCCTAATTATGAAAACCAAACA ATGTTTGCAACTGGGTTCACCAGTACCCACACTTGAGAGATGCACAAGAAGACATAATGCTAATGACTGTCTACCTGCAA TACGTTCTAAAATGTGTTCATTGTCTATTAATCTCTCTTCTTTGCATTTGTTGAAGTTTTCTTCATCAATCATTTTAGTA ATATAAGTGCAATTTTCCAAGTATTTACTTTTAGTTCTTTAATTGGATTGGTGGTCCATAAGGAAAACTAATTTGTTGAA GGGTTGAATTGGCCTTGTCACTGAGTTTAAAACGTGAATAGAAGAGAGTGGATATGTACTAATCTGCTATGCATTGATGG ATAGGTAGATTTGATTATAACAAATATAAGTACTGATTTGCTTATATTTCTATGTGGTATATATTATGATACCCCTCTTT ATAACACTTCCATATCATTGTGAAGAGTCTAGAGGCAAGCATGTGATTTGCAATTAGATGAAATGTGAAATGTTCAAATC CTACCACTGTTGAATTGAAAAGCTTGGGCCTAGGCTTGAAGGATTTTCCCTAGGAACACTTTAGTCTCGGTATTCATGCC TCATCTTTCACCAAACCAGCGAGGCGGACCAGTCAAGTTTCCTGCAAGCTGGTCTGAAAAAGATTTGACATGATATCAAA TGAATATATGGATAAGGATGTGTATTATAGTTGGAGTATTAATGCATTGTCAGTGTAAAACAGTTGTCTGACATCCAATC ATGCTATGCCATGTAGGACCACATTATAGGAGCAGTTATCTTTCTATTTATATAAATTAAAATAACAAATTATTTACTGT TTTGGGACTTTAAATCCTTAAAGTTGTTAATTTATTTAAAATGTGATATCTAACTGTCAATTATTAACTGGTAACCTCTT TTTGGTTCAGGTCAAATACATCCTATTCTCTTACATACATTTTACATCTTAATCACCTATTTTCTTTCCAATTAAACTGA TATTATGTTTTGTGTGTGTTCCCTTGCTTTATATTCTTTAACTAATTGACATCCCATTTCTTTACAATCATGAAATTAAT CATTATGTTCTGCACAGTTTATAGTTCAAACATTTTGACATGATGCGAACTTTGATTGCCTCTTGGAATCGTATGAAATA TGAATGCTAAAATCACATGAACTAGCTTGCAGTTTTTAGTTATCCTTCCTGAATTGTAGATTCTTGTGTTTTTTCAACTG CAAAGTCAAGACCTTTTTTTTTCTTTGCTAGTTCTGTAACTCCCATCTAGGTTCACACTATTGCATACCATGTACAGTGC TTATTCATCAATTGTCATTCATGCTGCCTTTGTAGCTGGGTCCTACTTTCCTTGGTCATTTCAATTGTATGTATTTGATA TTTTTCTGTGTGTTTATGGGGATTGGTTTGTGATATGTGACTATAATAAAATGTAGTAAAACTTCATAATGGAGTCAAAT ATATTATGCACTGCTTTTCAAATTTGGTGCTATGCTTATTTACCACTTTCACAAATGGGGATTGATGTAGTCGAGTGCTT GTTTATTTTTACCTTCATGCTATATGTTTTTCAAATACCTAATTGCTGCTAATCTTAAAATATTCATTGTCTAATGCTAA TTTTTGTTTTTTTTTGGAAGGTATTATTCCCATAACAATGATTATCTTGAAATTTGCCGTTGCTATAAGTCAATATATGA GATTCCATCTGTCAGAGAAAACCCTGCCGAGTGGATCCCAGTATGCTTTCTCTGTCTTTATTTGCACTTTCTGTTACTGC TAGGTTCTATTGTTCTATGATATAGTGTTTTTCTAAAAATTATCTTTACTTATAGATCCTGAGGAAAATATGTTGGTACT TGGTTCTATCGCCACATGATCCAATGCAATCAAGCCTCCTTAATTCCACCTTGGAGGATAAGAATCTATCTGAGATTCCA AACTTCAAGTATGTTAATCCTATTTATATCTGATGTTTTCTTGGTGATGTTCAAGTATTTTGTTTGTAATTTCTTTTTTA CTCGGTGTACCTGTTATATTCTGTGCTTAGGCTACTTTTGAAACAACTGGTCACAATGGAGGTCATCCAATGGACTACTC TTTGGGATACATATAAGAGTGAGTTTGAGAACGAGAAGGTCTCTGGGAAATCTTTGGATGAAAAAGCAGCCGAAGATTTA AAGCAAAGAATAATTGAACATGTAATTGACTGATGTCTTTATATTTCTTTGTTCTCCTGACATCAATTTGGTTGTATTGT GGGATATGCTTTTATGTTGCACACTTCTTTATGTGAGTATTTATAAGCATTATTTTTGTTTCTTTTCAGAATATTCTTGT CGTATCAAAATACTACGCCAGGATTACAGTGAAGAGACTTGCCCAGCTTTTGTGTCTTAGTGTACAGGTTTGTAAAGCTA GTTGTGATATATGCTTTTTTGAAGTGCTTGTGTGGTAACTTTTAAATGGCTCATGGGCATATCCCCTAGTATCTGTCACT GGAGACTAGTGTTTCAAATAAAAAATCTAGTTGGGGAGTTGTAGTTGACAGCGTATGTCTATGCTGTTGTGCTGCAGCAG TTCACTTGCCTCCTCCCATGGTTTATTTTGTGGGTTATCATTGTGGATGTTGTAACTAAATTTATTTTACTTTGCTTCTT AAAATCATCTTAGTGATAATCCCAACTAATTCTCCATATCTCCTTACAAAATTCAGGAAGCTGAGAAGCATCTATCAGAT ATGGTTGTGTCGAAGGCACTGATAGCAAAGATTGATAGGCCAAAGGGAATAGTGTGTTTCCAAACAGCGAAGGATAGCAA TGATATTCTTAACTCATGGGCAGCAAACTTGGAGAAATTGCTTGATCTTGTGGAGAAAAGTTGTCATCAAATACACAAGG AAACCATGGTCCATAAAGCTGTCTTAAAGGTTTAA
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0405800.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGGCTCGCCGGTGACGTTTCCGGCACCAGGAAAGCCGCCACCGACATTCTGAAGCTCTGCTTTGATGCGCGAGCCTG GAAAACCCTAAACGACCAGATTGTCGTTTTGTCCAAACGTCGTGGTCAGCTTAAGCAGGCTGTAACAGCAATGGTCCAGC AGGCTATGCAATATATTGATGAGACACCGGACGTTGAAACTCGTGTAGAACTCATCAAAACATTGAACAGTGTATCTGCC GGGAAGATATATGTTGAGATTGAGAGGGCTAGGTTGATCAAGAAACTTGCAAAGATTAAGGAAGAACAAGGGCTTATAGC TGAAGCAGCTGATTTGATGCAAGAAATTGCGGTGGAAACTTTTGGTGCCATGGCAAAAACTGAAAAGATTGCATTCATCC TTGAACAAGTTCGTTTGTGCCTAGACCGACAGGATTATGTCCGGGCACAAATACTCTCAAAAAAGATTAGTCCAAGAGTG TTTGCTGTTGATGCATCTAAGGAAAAGAAAAAGCCTAAAGATGGCGACAATCTTGTTGAAGAGGCTCCGGCAGATATACC ATCTCTGCTAGAGTTGAAGCGGATCTATTATGAACTAATGATTCGGTATTATTCCCATAACAATGATTATCTTGAAATTT GCCGTTGCTATAAGTCAATATATGAGATTCCATCTGTCAGAGAAAACCCTGCCGAGTGGATCCCAATCCTGAGGAAAATA TGTTGGTACTTGGTTCTATCGCCACATGATCCAATGCAATCAAGCCTCCTTAATTCCACCTTGGAGGATAAGAATCTATC TGAGATTCCAAACTTCAAGCTACTTTTGAAACAACTGGTCACAATGGAGGTCATCCAATGGACTACTCTTTGGGATACAT ATAAGAGTGAGTTTGAGAACGAGAAGGTCTCTGGGAAATCTTTGGATGAAAAAGCAGCCGAAGATTTAAAGCAAAGAATA ATTGAACATGAAGCTGAGAAGCATCTATCAGATATGGTTGTGTCGAAGGCACTGATAGCAAAGATTGATAGGCCAAAGGG AATAGTGTGTTTCCAAACAGCGAAGGATAGCAATGATATTCTTAACTCATGGGCAGCAAACTTGGAGAAATTGCTTGATC TTGTGGAGAAAAGTTGTCATCAAATACACAAGGAAACCATGGTCCATAAAGCTGTCTTAAAGGTTTAA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0405800.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MRLAGDVSGTRKAATDILKLCFDARAWKTLNDQIVVLSKRRGQLKQAVTAMVQQAMQYIDETPDVETRVELIKTLNSVSA GKIYVEIERARLIKKLAKIKEEQGLIAEAADLMQEIAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSKKISPRV FAVDASKEKKKPKDGDNLVEEAPADIPSLLELKRIYYELMIRYYSHNNDYLEICRCYKSIYEIPSVRENPAEWIPILRKI CWYLVLSPHDPMQSSLLNSTLEDKNLSEIPNFKLLLKQLVTMEVIQWTTLWDTYKSEFENEKVSGKSLDEKAAEDLKQRI IEHEAEKHLSDMVVSKALIAKIDRPKGIVCFQTAKDSNDILNSWAANLEKLLDLVEKSCHQIHKETMVHKAVLKV
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10855:SF3
1 324 324 1.1E-212 –
PANTHER
PTHR10855
1 324 324 1.1E-212
IPR040134
Coils
Coil
306 326 21 - –
SUPERFAMILY
SSF46785
323 361 39 4.35E-5
IPR036390
PANTHER
PTHR10855:SF3
324 395 72 1.1E-212 –
PANTHER
PTHR10855
324 395 72 1.1E-212
IPR040134
Pfam
PF18098
358 390 33 9.7E-15
IPR040896

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0405800.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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