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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0407000 |
Transcript ID | LotjaGi4g1v0407000.1 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Histone H3; TAIR: AT1G09200.1 Histone superfamily protein; Swiss-Prot: sp|P68429|H32_MEDSA Histone H3.2; TrEMBL-Plants: tr|G7L647|G7L647_MEDTR Core histone H2A/H2B/H3/H4; Found in the gene: LotjaGi4g1v0407000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:78333186..78334221) extracted from Lotus japonicus Gifu genome v1.2.
CAACCGTCGATTCACTCTCACGCGGATCGTGAAATCCAAAATCGCACCCTCCAAAATTTCATTTCAATTTCTTCTCTTCT CCCTATAAATACACTCCCTTTCACTCCCATTTCCATCACCACAATTCAGAAACCCTATCTCAATCACTTCTTTTCAATCG TTCTTTTTCGCTCTTTCCAGATTCTTCTCGATGGCCCGTACCAAGCAAACAGCGAGGAAGTCCACCGGCGGCAAGGCTCC CCGGAAGCAGCTGGCGACAAAGGCGGCGAGGAAGTCAGCTCCGGCAACCGGAGGAGTGAAGAAGCCACACAGGTTCAGGC CTGGAACTGTTGCTCTGAGGGAGATCAGGAAGTATCAGAAGAGTACTGAGCTTCTGATCCGGAAGCTTCCGTTCCAGCGA TTGGTTCGTGAGATCGCTCAGGATTTCAAGACGGATCTCAGGTTTCAGAGCAGTGCTGTCTCGGCGCTTCAGGAAGCAGC GGAGGCTTACCTTGTTGGATTGTTTGAAGATACCAATCTCTGTGCCATTCACGCCAAGAGAGTCACCATTATGCCTAAGG ACATTCAACTCGCTAGGAGAATCAGAGGCGAGAGGGCTTAGTTCGTTCAAAATTCCCCAATTCCCATTTCAATGCTTGAT GTCGCTTTTTCATTTTGCCCTAGTTTAGTTTGCTGGTATACTTGTGTGATTTGAATGTTGAGCAAACGATTTGCATGTTT GTCATTGAATGTGATCTTGTTTGTCAAATTAATATCTTAGTGTATTCTTCAGATCAGAGTTGAACAAAATAAATCTCTTA TTGAATTTGCATTCACCGAATGCGATGGGCTCTGCAAGATCTGTATAATGAACGATTAATTCGTAACTGAATAAGTTCCT AGTTCAATAAATTATTTGTTAACGAGGCACTGGATAGAAGGGGTTTTCTATGAACAATCAAGATTTGTATGACTTTTTAA TGAATGCATTGCTTTATTTAAGCTGCTCTAAAACTTACATGAATAACAGAAGCTGCTGGTACTGCTGGAAATGTAT
CDS sequence (LotjaGi4g1v0407000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCCGTACCAAGCAAACAGCGAGGAAGTCCACCGGCGGCAAGGCTCCCCGGAAGCAGCTGGCGACAAAGGCGGCGAG GAAGTCAGCTCCGGCAACCGGAGGAGTGAAGAAGCCACACAGGTTCAGGCCTGGAACTGTTGCTCTGAGGGAGATCAGGA AGTATCAGAAGAGTACTGAGCTTCTGATCCGGAAGCTTCCGTTCCAGCGATTGGTTCGTGAGATCGCTCAGGATTTCAAG ACGGATCTCAGGTTTCAGAGCAGTGCTGTCTCGGCGCTTCAGGAAGCAGCGGAGGCTTACCTTGTTGGATTGTTTGAAGA TACCAATCTCTGTGCCATTCACGCCAAGAGAGTCACCATTATGCCTAAGGACATTCAACTCGCTAGGAGAATCAGAGGCG AGAGGGCTTAG
Protein sequence (LotjaGi4g1v0407000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK TDLRFQSSAVSALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 136 | 136 | 4.4E-108 | – | |
MobiDBLite | 1 | 43 | 43 | - | – | |
PANTHER | 1 | 136 | 136 | 4.4E-108 | ||
Pfam | 1 | 132 | 132 | 7.9E-54 | ||
Gene3D | 2 | 136 | 135 | 2.3E-79 | ||
SUPERFAMILY | 2 | 133 | 132 | 7.04E-57 | ||
PRINTS | 3 | 17 | 15 | 1.5E-85 | ||
ProSitePatterns | 15 | 21 | 7 | - | ||
PRINTS | 17 | 31 | 15 | 1.5E-85 | ||
SMART | 34 | 136 | 103 | 2.3E-74 | ||
PRINTS | 34 | 55 | 22 | 1.5E-85 | ||
PRINTS | 58 | 75 | 18 | 1.5E-85 | ||
ProSitePatterns | 67 | 75 | 9 | - | ||
PRINTS | 80 | 98 | 19 | 1.5E-85 | ||
PRINTS | 98 | 114 | 17 | 1.5E-85 | ||
PRINTS | 114 | 135 | 22 | 1.5E-85 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Cellular component | Nucleosome | A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures. | ||
Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
Molecular function | Protein heterodimerization activity | Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer. |
Expression pattern of LotjaGi4g1v0407000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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