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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0410700 |
| Transcript ID | LotjaGi4g1v0410700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | E3 ubiquitin-protein ligase RGLG2-like protein; TAIR: AT5G63970.1 Copine (Calcium-dependent phospholipid-binding protein) family; Swiss-Prot: sp|Q8RX26|RGLG3_ARATH E3 ubiquitin-protein ligase RGLG3; TrEMBL-Plants: tr|I1K512|I1K512_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0410700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:78661418..78666362) extracted from Lotus japonicus Gifu genome v1.2.
TGAGCATTTTACCTTTTAAGCTGGCAAAAAGTTTAGTTTTTATGCATTGATAAATAAATTTAGTACTGGGATTTGTATAA TCATTGAACTTTGTTTTTAAGTATGGTCCTGTCTTCTTTTTTTAATCTTCAACTCCCCATTGCTTTTTGTTTAATTTGCA TTTTGATACAGGTGAAAGGAGGTTCTAGTTATGGGACATGGAGGGTCGAGACATCATCATCATCATCATCATCATGGTCA TTTATCCCAGCAACCTCCTTCATATGTTGGGAGTTCAGCCAATTCTAACTATCAATATCATAAACCATCTTCTGATGCTG GAACTTCAAAGAATACTAGACATCAACATAAGCAGCGCCCCAAGTATATAGCTGACAATTTCAGCTCATTGGATCAGGTT TTCACTGCTACTTTTGCTCATTGATTTAGAAAAATGGTCAGTGGTGATCTTAGCCTTAGCATATGATATTTTAAGGTTGT TTCTGCTCTGAGAGAAGCTGGTCTGGAATCTTCAAACTTAATACTCGGTATTGACTTCACCAAAAGCAATGAATGGACAG GTTGGTTCTTTTGAATATGAAATTATGTTGTACATACACATTAGTATGGAGAATGCAGAAAAGTCACACCTTCATAATTA TAGGCAAGCGTTCCTTCAATAACAAAAGCCTCCATCATATTGGTAGCACTCCTAATCCATATGAGCAAGCTATCTCTATC ATTGGCCGTACTCTCTCTTCGTTTGATGAAGATAATCTGATACCATGTTTTGGATTTGGTGATGGTGAGCTGCTTTTTCT GATTTAGCTATGAGGGACAAATGCTGTATGTTTTCTCTTCTATTGATACGATATCCTTTGCTTGTAGCATCTACACATGA TCAGAATGTCTTCAGCTTTTTTCCTGATCATCGCTGTTGTAATGGTTTCGAGGAAGCACTTGCACGCTACAGAGAGATTG TTCCATGCTTAAAATTGTCAGGTATGATAAAAATATTATCTTCCTTGCTAGATGAATTTATAATTTTGCTACAAGTATCT GTCTCAAATATATTCAATGACTTTGGACAATTACACTACTATATAGTGATGGGCTCAGAATAGTGGTATGATGCTGATTG GAAGCCTTATTGTACGAGATTGTATGATTGTTCTGTCAAGTTAGAACACCAATAAATGCTTACTTGTTGAATACATATTG ATTTGTGCTAGGAATTGCAATGCAGATTCAATCACAGCAAAACCTGTGAAAGGCTAGGGCTTCTTATGCAGTTCATACTC TATAATCACAATTATCAATGGGGAAAATTGTTGAGCAACTAAAAGTTATCAAGTGAATGTAGAGGGGACCTAGCCAAATA AGTTAATCCTAGTCCCCTCCGTCATGGGCCTACGGGCCACACCATTACCCACATGAATCAATTCTATGGATATTCAAACC TTACTAAACGGATCACAAAAATTTTTAGGTGGCCTCAAATGCATCCCTATATGCAAATTAAAAAACAAACATCTGACAAT AGTTATTAGATAATTCTAAAACTTATAACTCAATCAGACCTTTTCACTGGATATTTTCATAGTTTGTCATAAGAGTTTTG AGACAAATAGCTATCTCTTGTTGAAATTTGAAGTATCTTGGCAATTATTAAGTAAGTTGTTTGTGCAGTTTGGATAAAAT TGAATCTTGAATAGTGAATCTTACGAATCTTAACTAGGAAATCTTAGATTGCAGGCTATATATTTTAAACAGGTTTTAAT CTAGTTTCCTGGTAAAACATTCCTAAGTGGAGGGGTGGGAATTCAACTTTTCTGAAGGTGGGCTAACATTTCCAAAAACA TTATAAGCTTACCAAATAAATTTTATACATTCCCAGAATCATAATTACTAGGAAACATGATTCACAAGAATGAGAAAAGA CTGCATACGAACGCTGCCTTGTTAAAAAAGGAAGCAGTACATAGGGGAGATAGTGTAAATATCCAGGCAATGATATGAAG ATTTAATTATGAGTCCTTATCCACAGGTCCAACATCATTTGCCCCAGTAATCGACGCAGCAATTAACACTGTGGAAAGAA GCAACGGTCAATATCATGTTCTTGTGATTATTGCTGATGGGCAGGTTATACTTGTTTAATATTGACCTGATATATTTTCT TTTCATGTCATGATTTAATGGCCTTTTCTTAAATTTTCTTCTATTTCTGGAATATCTTGTTTTTTACAGCTTAGTCCGCA AGAACAAGCAACTGTTCATTCTATCACAGCTGCAAGGTAAAGCAATGTCTTCAGTAGTCTTCTGCTATTGTTTGTGGTGT CTGTCTTTGATGTGGAGCTATTCTGATTGTCAGTCACTATCCTCTCTCAATTGTTTTGGTTGGAGTCGGAGATGGACCAT GGAATGCAATGCATAATTTTGATGACAGCATGCCTGATCGCAAATTTGATAACTTCCAGGTACTTGACATTATGTTTTAT TGTGTGTATATACTTGTGATCACCCTGAGAAAAGACTGCTTAATCTCAAAAAGACTGGAAGATTTTCAGTATTCCATATT TAGAATACCACTCTTAACTCTGAATTATTTCTTATATTTGGAGTTTCTTATAGTTACTGTTATTGATTTGTTAGCAACAT TTTGTTCACTGTTGCCCCTCCAGTTTGTGAATTACACAAATATGATGTCTGAAAACAAAGAGACATCCAAGAAGGAAACC GCATTTGCACTTGCTGCCCTTATGGAAATTCCAATTCAGTATCGCATAGTCCAAAATCTACGAGTCCCCAAGTAAGTTAT GAACTGAAGTATGTTAATTGTAAGTTGCGACTATAACCGCGTCTCATCTCGTGTTCTTTTGATGCAGAGGAAAATCAAAA AGGTATCAAGCCAGAAAGCCTTGCCCTCCCCCTAAGGAGGTAGATCATGGTAATGCCTTACCAAAAGTGCCACAAAAGAA GGTAATAGATGACAATGCATTACCAGAAGTTCCAGACAAAAAAAGCTTAGGATCAGCTGAGCCGACCGCTTCAGATGCTA CAGAATCAGTACGTTACTCTTGTACCCCCACCATATTGTCTTTCTCCTGCTTTAGATTCATTAAAAGATCACATTATGGT TACAATATTAAATCCCCTCTTGTTCTAGGTATGCCTTATTTGCCTCACCAATCCGAAGAACATGGCTTTTGGATGTGGTC ATTTAGTAAGTCTGATTGATGAACTTATTCTTGTTTAATGCTTATGTTAGTGTGCTAAGAGGTTATACTTATAGCTGTTT GTGTGAATGATAATCTATCTCAAAGGGAGTTTAGATTATAATTGTTGCACTGGAGGAACTTTCACTTCACTTCTGCTGTA CTAATGAAAGTTCAAAGGAAAATGAAAAAGATTGTCTTTCCTTTCTCCCAATCAAAATTCTGCAACATTTCAACATTGAC ATGTAATCTGATTTTTCATGTAAACATGCCATCTTCTAAAAATTAGCATGATAAAGCAACAAATTGGTAGGAAAAAGCAT TCTATTTTCGGCCATTCATATAGAATTGCTCTGCATAAAGGAACAATTGGCTATATAACATTATAACTTACATGTGAAAA TGTCTCTTATTTATTTCAACTTTTTTTCTTTAATGTAGACTTGCAAGGAGTGTGGTGTGACCTTATCTTCATGCCCTATG TGCCGGCAGCAAATTACAACTCGTCTCAAACTATACGCTTAAGTTGGAGGTTTCTTAGCATACACTGCTATTGCCAACTG ATAAGATTACTGCTATTGCCAACTGATAAGGAATGTCCCACCTGTAAAATTATAAGCATTTCAAATAAAAAAATGTTGTA CAAAAAGGTTGGAATGTTTACATTTAATGTTGATTGCATTTCTTTTTTTTTTTTCTTCATCGGAAGATGTTGATTGCATT TCAAGAAGCCATGTTACTCTTATTCACTTAATAATAAAAAATTAGGCTTAAATGCTCAATTGACCCATGTAATTGTAAAG AGAATCAACTCTGGTCCCTGTAAAGTTTTCGTATCAAATTGGATCCCTAAAAAAAAATTTAATCAAATTAAGGACAAATG TGTCGGCCGCTGTTAAGATTAAAACATAACTAAATACAACCCTAAAATTAAAATCTAATATCTTAACCTAGCAGCCCCAC CCCCTCTCTTCTTCCTCAACACCATAATGTTTAATCAGAATAATAGTTAAAATTTCCCAGTATGAACTGGTTTCAGAGAT GAAGTGAACTGAACTGGAAGAAGAAGTTGAAATTCACCTCCATATACATATTTCACAAATGCACCAAAATTATAGAAGCA GTTGGAGAATGGTAGAACAGGGGATCTGGGAAAATAAATAAAACAATTGACGAAATTCTAGTAAATAAATAAGAGATAAA GAGTAGAGTCAGCTGAATAAGTGAAGAGACTGTGGTTATCTTACATTGACACATGCGAGGATAGTAATAGATAGTTTACA TGATCAGTGGAAGCTTAAATAACATATATACACAAACATGTTACAAGATAGATTAGATAAGCACTACACTGAAAAATAGA TGAATATCATTTTTTGGTGGAGGAGGGTGAAGAATTGGCCTTGAAGATGTTCTTTAGAATGCCATTCTTCACTTTTGCTC GGGATGGAGGCTGGTTGTGGAATGAACCCGAAGGAGGAGGGAGTTGAACTTTGCCATCACTCATACTTGATGCTGCTCCT CCAATCTTCAAATTAAATCAAATGAAATGCAACTCCTTCCCAACTACAACATGTCATGTTTTATATAGGGTGTTAATTTA CCAATTGATTTGATTTACCTTCTGTTCTTTTTTAGTGTGAAAATATGATCTTTCTCATGGATAAGATCAAGAGAGGAATT GAATGAGATGGGTCCGGTCCTCATAAAGAAAACATCAACCTCTCATTATTTAGTGTATGTTTATT
CDS sequence (LotjaGi4g1v0410700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGACATGGAGGGTCGAGACATCATCATCATCATCATCATCATGGTCATTTATCCCAGCAACCTCCTTCATATGTTGG GAGTTCAGCCAATTCTAACTATCAATATCATAAACCATCTTCTGATGCTGGAACTTCAAAGAATACTAGACATCAACATA AGCAGCGCCCCAAGTATATAGCTGACAATTTCAGCTCATTGGATCAGGTTGTTTCTGCTCTGAGAGAAGCTGGTCTGGAA TCTTCAAACTTAATACTCGGTATTGACTTCACCAAAAGCAATGAATGGACAGGCAAGCGTTCCTTCAATAACAAAAGCCT CCATCATATTGGTAGCACTCCTAATCCATATGAGCAAGCTATCTCTATCATTGGCCGTACTCTCTCTTCGTTTGATGAAG ATAATCTGATACCATGTTTTGGATTTGGTGATGCATCTACACATGATCAGAATGTCTTCAGCTTTTTTCCTGATCATCGC TGTTGTAATGGTTTCGAGGAAGCACTTGCACGCTACAGAGAGATTGTTCCATGCTTAAAATTGTCAGGTCCAACATCATT TGCCCCAGTAATCGACGCAGCAATTAACACTGTGGAAAGAAGCAACGGTCAATATCATGTTCTTGTGATTATTGCTGATG GGCAGCTTAGTCCGCAAGAACAAGCAACTGTTCATTCTATCACAGCTGCAAGTCACTATCCTCTCTCAATTGTTTTGGTT GGAGTCGGAGATGGACCATGGAATGCAATGCATAATTTTGATGACAGCATGCCTGATCGCAAATTTGATAACTTCCAGTT TGTGAATTACACAAATATGATGTCTGAAAACAAAGAGACATCCAAGAAGGAAACCGCATTTGCACTTGCTGCCCTTATGG AAATTCCAATTCAGTATCGCATAGTCCAAAATCTACGAGTCCCCAAAGGAAAATCAAAAAGGTATCAAGCCAGAAAGCCT TGCCCTCCCCCTAAGGAGGTAGATCATGGTAATGCCTTACCAAAAGTGCCACAAAAGAAGGTAATAGATGACAATGCATT ACCAGAAGTTCCAGACAAAAAAAGCTTAGGATCAGCTGAGCCGACCGCTTCAGATGCTACAGAATCAGTATGCCTTATTT GCCTCACCAATCCGAAGAACATGGCTTTTGGATGTGGTCATTTAACTTGCAAGGAGTGTGGTGTGACCTTATCTTCATGC CCTATGTGCCGGCAGCAAATTACAACTCGTCTCAAACTATACGCTTAA
Protein sequence (LotjaGi4g1v0410700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGHGGSRHHHHHHHHGHLSQQPPSYVGSSANSNYQYHKPSSDAGTSKNTRHQHKQRPKYIADNFSSLDQVVSALREAGLE SSNLILGIDFTKSNEWTGKRSFNNKSLHHIGSTPNPYEQAISIIGRTLSSFDEDNLIPCFGFGDASTHDQNVFSFFPDHR CCNGFEEALARYREIVPCLKLSGPTSFAPVIDAAINTVERSNGQYHVLVIIADGQLSPQEQATVHSITAASHYPLSIVLV GVGDGPWNAMHNFDDSMPDRKFDNFQFVNYTNMMSENKETSKKETAFALAALMEIPIQYRIVQNLRVPKGKSKRYQARKP CPPPKEVDHGNALPKVPQKKVIDDNALPEVPDKKSLGSAEPTASDATESVCLICLTNPKNMAFGCGHLTCKECGVTLSSC PMCRQQITTRLKLYA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 59 | 59 | - | – | |
| MobiDBLite | 1 | 18 | 18 | - | – | |
| MobiDBLite | 21 | 46 | 26 | - | – | |
| PANTHER | 25 | 414 | 390 | 1.3E-196 | – | |
| PANTHER | 25 | 414 | 390 | 1.3E-196 | – | |
| SMART | 81 | 280 | 200 | 7.5E-6 | ||
| SUPERFAMILY | 82 | 249 | 168 | 2.0E-12 | ||
| Pfam | 106 | 305 | 200 | 8.8E-70 | ||
| MobiDBLite | 310 | 361 | 52 | - | – | |
| Gene3D | 350 | 415 | 66 | 6.7E-14 | ||
| Pfam | 368 | 409 | 42 | 7.0E-10 | – | |
| SUPERFAMILY | 370 | 410 | 41 | 1.24E-7 | – | |
| CDD | 370 | 414 | 45 | 1.51436E-19 | – | |
| ProSiteProfiles | 371 | 404 | 34 | 10.955 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0410700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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