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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0424900 |
| Transcript ID | LotjaGi4g1v0424900.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Actin depolymerizing factor, putative; TAIR: AT4G25590.1 actin depolymerizing factor 7; Swiss-Prot: sp|Q67ZM4|ADF7_ARATH Actin-depolymerizing factor 7; TrEMBL-Plants: tr|I3T7V9|I3T7V9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0424900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:79978300..79980810) extracted from Lotus japonicus Gifu genome v1.2.
CTTAAACCATTATCTTAGTCTTGTCAAAGTTCCACCTCTCATGATCCAAAAAACAAGGATCTTCATTCCTTATTTCTTGT CCTTAGTTGTCATTGAGCCTATTCTATTGCTCCTCCCATTTTTCATTCTCTATTGCTCCCCCTTGCTTTCCTTTTCATTC ACATTTCACAGGGCGCTTCTTTCTCATTCTGACAAAATGGTATGCTCTCCCTCCTCCCTTCTTTCTGTATTTTTCTGCCA AAATTGCTGTTGCTGTATTGTTTTAACCTTGAAAACAAGAACTCTGTCATTACTTTTGAAAAAACTAGACCATTTACATT TGTATGCAACATGTGTAAATGAACATCATTCCATCTGCTTAATATTTCACATCTCATAAATTATTATGAAATTCAACATC CTGAGATCTTAAACTCAAAATTAGATCAAATTAGGAGATGATAACCATTCCAATAATCCAATCCATTCATTAAGTACACA CCCTTCCTAAAATGATTATCAAAAGGTGATACCAAGCCATTCCGAATTTTCTCACATTTATAGTATGTTTGGGTATGTGG CGGCACAAATTCCAAAACTCTAGTTACAATTTGTTGTTGGTTCCACGTTTGAGAGCCTTAGAATCAATTCTCATTGATCA GAATCACCTTCAGGTGGATATATAAATGTCGGGCAATCGGTATATAGAATTGATTTTAGTCCCAAAACCAATTCTGCGAG AAGCGATTAGAGGTTTCCACCACATAACTAAACACACTATTAGAGGTTGTATGGCCCTTCAAAATCAACATATTCTTCTA GCACTTGTCTAGCCAGTACATTAAAAACAACTTTTTTTCAATCTTATCCTGATGAAGAATACATAACAATCACTATAAGT GAAAATTGCATACCATAGCTCAACAATTTTATCGGTTTAAGGATTGAAACCTTGAGTTGATAACATGAAATTTTGAGGCA GGCAAATGCAGCGTCCGGAATGGCTGTGCATGATGATTGCAAACTGAGGTTTCAGGAGCTTAAATCAAAGAGGAGCTACC GGTTCATTGTGTTCAAAATTGAAGAACAGCAAGTGGTGGTTGACAAATTAGGGCAACCCTCTGATAGTTATGATGACTTC ATGGCCAGTTTCCCAGATAATGAGTGTCGTTATGCCGTCTATGATTTTGATTTCATAACAGATGAGAATTGCCAGAAAAG CAAGATCTTCTTCTTTGCATGGTAACTAATTTACATACATGATTGCACCTCATCAATTGTTTTATGCAGGTTCATGCAAA TTTAACATTTTTTAATAGCATGTTTGGATCAACTTATTTTTCCTCAAAATCAATCCCGCTGTTCAAAAGGTAGCTTCTCC ATAGAATTGATTTTGATGTCAAAATCAATGGTAGAATGATTTCCAAACATGTATGAAGACTGCAAGGCCAATCGGTCTTG AAGTCTCTATGATACCATCTCACCAAAGTCAATTCAAGCACATTATGAGGCATAAAAGCTAACAAATGTGATGGGTTGGA TTGGGCAAACACCCGTCTACATTCACCCAACATTTTTCCAAACACATAAACGTGTTGGACACATGATGATACGTAAATGA TTTTATATTATATTTCTAACATGTCTGTTCACGCAAGAGCCAATCAAGTGATACCGTCTCATGAACCAACTATCATAACT TAATTTTTTTGGTGAAGACAGATGCATGGCTTTACATTGTATTACTAACATATGTGCAGGTCACCAGATATCTCAAGGGT GAGGATGAAGATGGTGTATGCAAGTTCCAAGGACAGATTCAAGAGAGAATTGGATGGCATCCAAGTTGAACTGCAAGCAA CTGATCCAAGTGAAATGAGCTTGGACATTGTGAAAGGGCGAGCCCTCTAAGCCACTCTTCTTGATTAATTTCTATAACTG TGTGGCAGCTTTGGGAGCCATCGTGTTTTTGCCTATTATATTGGATTCAACAAAGACTGATCCAAAATGACATGCATGTC ATTCTTCCTTGTACTCTATCCTTGTCTAGCTTTCTAGTGATGATCTTGGGTTCTTGGTTTGTTTGAAGAGTCATGTCAAG ATTAGCATCTATATTGTAGGCTGATCCTCTGCCAAGTTACAAATCTGACTGATTGGTTTTTCACTTGAGGGTGGATTTTG TGTAATAGAAGCTACTGAAAGAATGATGACATTGATGTATGTCTAATGTCTCAACCATTTTTTATATCTCTTTTTTGGAA GAACATTGGTACAGAATGATACATGGATAATTCTAGTTGATACACATTTCCTTTGAATCTGTGTTATCTCTTATTGTCAG GTGGCAGAATTAGATTTTAAGTGTACTTAAAATAAAGTAAGACCAACTATTCTTATATAATGAAAACTAAATATATGGTT GTTAAGTGTAGGGGTACAGTGTTGTGGGATGGGTTGAGTTTCACTTTCATCCTACCCTAAATATTGTTTACATCAGATTT TAAACTTGAATTTCTCATACTTTCTTATGGT
CDS sequence (LotjaGi4g1v0424900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATCCAAAAAACAAGGATCTTCATTCCTTATTTCTTGTCCTTAGTTGTCATTGAGCCTATTCTATTGCTCCTCCCATT TTTCATTCTCTATTGCTCCCCCTTGCTTTCCTTTTCATTCACATTTCACAGGGCGCTTCTTTCTCATTCTGACAAAATGG CAAATGCAGCGTCCGGAATGGCTGTGCATGATGATTGCAAACTGAGGTTTCAGGAGCTTAAATCAAAGAGGAGCTACCGG TTCATTGTGTTCAAAATTGAAGAACAGCAAGTGGTGGTTGACAAATTAGGGCAACCCTCTGATAGTTATGATGACTTCAT GGCCAGTTTCCCAGATAATGAGTGTCGTTATGCCGTCTATGATTTTGATTTCATAACAGATGAGAATTGCCAGAAAAGCA AGATCTTCTTCTTTGCATGGTCACCAGATATCTCAAGGGTGAGGATGAAGATGGTGTATGCAAGTTCCAAGGACAGATTC AAGAGAGAATTGGATGGCATCCAAGTTGAACTGCAAGCAACTGATCCAAGTGAAATGAGCTTGGACATTGTGAAAGGGCG AGCCCTCTAA
Protein sequence (LotjaGi4g1v0424900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIQKTRIFIPYFLSLVVIEPILLLLPFFILYCSPLLSFSFTFHRALLSHSDKMANAASGMAVHDDCKLRFQELKSKRSYR FIVFKIEEQQVVVDKLGQPSDSYDDFMASFPDNECRYAVYDFDFITDENCQKSKIFFFAWSPDISRVRMKMVYASSKDRF KRELDGIQVELQATDPSEMSLDIVKGRAL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 6 | 6 | - | – | |
| Phobius | 7 | 31 | 25 | - | – | |
| TMHMM | 7 | 29 | 23 | - | – | |
| PANTHER | 32 | 188 | 157 | 2.5E-104 | – | |
| Phobius | 32 | 189 | 158 | - | – | |
| PANTHER | 32 | 188 | 157 | 2.5E-104 | ||
| Gene3D | 53 | 188 | 136 | 3.9E-50 | ||
| SUPERFAMILY | 54 | 187 | 134 | 2.62E-44 | – | |
| ProSiteProfiles | 57 | 189 | 133 | 36.662 | ||
| CDD | 58 | 188 | 131 | 4.18738E-64 | ||
| SMART | 64 | 189 | 126 | 5.5E-56 | ||
| Pfam | 66 | 185 | 120 | 2.1E-36 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Actin binding | Interacting selectively and non-covalently with monomeric or multimeric forms of actin, including actin filaments. | ||
| Cellular component | Actin cytoskeleton | The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes. | ||
| Biological process | Actin filament depolymerization | Disassembly of actin filaments by the removal of actin monomers from a filament. |
Expression pattern of LotjaGi4g1v0424900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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