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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0425900 |
| Transcript ID | LotjaGi4g1v0425900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Bromo-adjacent-like (BAH) domain protein; TAIR: AT4G11560.1 bromo-adjacent homology (BAH) domain-containing protein; Swiss-Prot: sp|F4JL28|EBS_ARATH Chromatin remodeling protein EBS; TrEMBL-Plants: tr|A0A0S3QXP3|A0A0S3QXP3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0425900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:80073337..80078928) extracted from Lotus japonicus Gifu genome v1.2.
ATAGTTAGTTCAACTTTAGGGCATAGTTTGATAATTTCTGAAGTTGATAATTTTTGAAATTGATATGAACCAATGCCTAT AAATGGGGCATAGTTTGCGATGTAAGAAAAGAATCAGGTTTTCCAAAAATGTGCTAGAAGTTGTGGATTTCATCATCATC TATATCCATAAACCTAAAATCTTTCTTACACTAACACTAGTACTAGTAGACTCATCTCACAAACCGCACTGCAACCAACG GCGGCGAAAAAATGGTGACTCGACGGTTGGCTCAGATTGCAACCAGCGACGACGACGAAGACGAAGCACCCAAGCAAGAG TCTCTCGAAGCGAAGCAGCAGCGGAAGAGGAAGAGGATGAAGCTGCAGGAATATGAAGATGAAGAAGCTGAAGTAGTAGT AGAAGAAGAGGATGAAGAGAAGAAGAAGAACCAGAGAAATCCCCCTACATCTGACGCAGAAGAAGAGCAGGACGCGCCAC TGGAGGATGCTAAGCCTGTTGGCGAATCAATTAGGGTTTCTGGAAAAGGTAGAGGCAGGAAGAGGCATTTTCACTGCTTC GAGTTTGATGGAAACCAATACGCACTGGTACATATCTATCTCTCTCGCTCTCTCTTGCTCTTACTCGCTTTTTGCTCATT CCATAGTTAGGTTTGAAGTTAGAACTAAAACGCTGATAGGGTTCACATCAAATGCATATTTGTGTTGATTTCAATTACTG GGGGTTCTGAAGTAGTGATTATGAACAACAGAAAGCATATGTATATCTTCTAATTTACGCTTGTTACTTAGTAATAGTGT GTGCATGTCAACTGAAGAATGCAGTTTATGCTTGATTCTTTCTAGTTTGGGCATTGTTTGTGTTTGTGACGGCGGTGATG TTTGTTTTGTGAAATCGGGTCCTGAGAACTTGCTGCGCTTTTGTGCTTTGATCCTGCTATTTACTGTTGTTCTTGATGTC ACTTTTTTGCTGCAGGAGGACCCTGTACTTCTCGTGCCCGAGGGTGAAGATCAAAAGCCGTACGTGGCAATTATTAAGGT AAATTCCTTGTTAAGTATTTAGTTGTGCCATAAATTGATTATAATTTTGAAGATATGTTGGGTTGGAACGTTCGAGTTTT ATGGCACTTTGGTAGCTGCTTATATATGAAAAGGTATGAGAGAGAGTACCTAAAGTATTAGAGCAGATGGGGTGCTGAAG ATTTCCTTATAACTATAGGGCTACATCAAGGGTCAATATTGAGCCCTTATTGGAAGTCCCTGGCTTGTGCTTGTCCCAGA GTTAGAATGTCACTTTGTCCAATTTTTTACTTTTGCTAACATGTTCACCAAATTTTACGGTGTTGTATGCAACATCAACT AGGTTGTCATACAACTTGAGCTGTGTTGTGTTATAAAATTGTGATGGGTTTGGTAAACCTCTTTCTCATTTCTTGTCTTT CACACATGGAGGTAGAGGGGGTGTTATTCCTTAATCTTCTACAAAATGTAGTTATTTTTTTATCGTCTTCCACCTTCTGA TTTCTGGAGTTGTTTTACTGTTAGGACATTGCACAATCTGTAAATGGCAGCATAATGGTCACAGGGCAATGGTTTTACCG TCCTGAAGAAGCAGAAAAAAAAGGCGGTGGCAGTTGGCAATCATGTGATGCAAGGGAGCTCTTTTACAGTTTCCACCGTG ATGATGTTCCTGCAGAATCCGTCATGCATAAGTGTGTGGTGCATTTTGTTCCCATACACAAACAGCTTCCGAATCGTAAG CAGCATCCCGGGTTTATTGTGCGAAAGGTGTACGACACAGTAGAAAGGAAACTCTGGAAGCTAACTGATAAGGACTATGA GGACGGTAAACAGCAAGAAATTGATGAGCTTGTTCAGAAAACCCTTGAACGTTTGGGTGAACTACCTGACATCGAAACGG ATGAAGCTCTTGCTGATCAGGAAGATCTGACAAAAAATAAAAGAATGATGAGAAAAAAGAGCATTTCACCTCTCGATGTT TCAAAGGAAGAAACAGCTCGAAAGAGTGACCAACCTCTGAAACCTGATACACCATTGAGCTGTGTAAATAATGCCTCAGA GCATTACCGCATACTAGTGGGTTTCAATGCACTAACAGGAGATACCCATCGTGACAAAGGTTTGGAGAAGTTACTTCAAA GTGTTCAATACATGTTTGATAACAATGGTAGCATGAAGAATGAAGAAAAGGTTAATGACAATTCTGATGACATAAAAAAT GGAAGCAGTAACAGAGGTTCAGAATCAGCAAATGAATATAAAGACAAGGTTCAAAAGGTACTTGGTGAATTACCCAATAA TGCTTGTGATATCTTGGATGGGTTTATTTATTTTCTCATAATCTTTCATTTATTTCCCTTTTCCTTGAGGGTCATAATGA ATTCAGAATTTACTTTTTTCACTCTTCAGAGTTCCAAGCCTTTGATCTGGCCAGGTGTTGCTGTTTCAGCTGTAGCTGCT CTGGAAAAAGCTTCACATGATGCTCTTTCATCAGATTATCAGAAGTACAACCAAAAGCTACGACAATTAGTATTCAATCT CAGGGTTAGAAGCTGATTTTCTAATATGGATCATTAACTTGAAATGTTTATAAGCAACACACTTGAGTGATTAAAAATTA CCTATTGCTGCTTTTATTTTGGGTTAGGTGGGACTTTAGTTCTTGTTTGTATATATATATTACCACAAATTTCCGGCTAA GAGGTTAGATATCTGATAGAATTGCAACAATATTCATGGCAATGTTGTCATCTTGTGTTGGATGATTTTTAAGTTCACTT ATGAGTTCATACAGCAATGGTAGTGGTTTTTTCTGCCCTCATGGTCCACATTATCTAGGTGGTGTCACAGTTGTCAGATG AAGAATACCTTTTGGCAAGATCAGAATTATGTTTGTGGGGTATGGGGTTCTTGTGGGAAATTTTGTAGCAATACAGTTTA CTGTCCTCAAACGGCTAGGCCAGGGCAAGGGTGGGTTTAGTAAGTGAAGGTTTACTTGCTTCCTTCCTAGGTCTTCTAAT GTAGCAAGCTCACATGAGCCCTAAATTACTACAGTCCGTTGAGTTTGTGGGGACTTTTGACACTTATAATAAGAATAATA AGAATTCGACTCACATTTGGTTGATAACGAGCTGGCTGTTAAATTCAAAGGAAATAAACTATCATATGATAATAGGAAAC AAAAAAACTGGCTTACTGTAACAATGATGTTATTTCCTCAATTATTGATGTACACCACATCACCACTCTTAATGCTCTAC TGCTGTTTTTGGCTTGACAAATCAATGTGAATATCTCTGTACTTATTTTTGCTGTTGTGATGGATGTACAATCTTCTACT GTTGTAATGGTTCCCTTATCCCTTATATTTCATTTATTTTTCTTTGGCAGAACAATGCATTCCTAGCACGGCGTCTATTG AATGGAGAGTTGGAACCTTCGAAAATATTGAATATGACACCTGCTGAGTTGAAGGTATGATGTATGATGTCTTTTTGTCC CCCCTTGGAACTTTGAAGTTGTCTGCTCACTTGATGAATTTTCAACCTTTCATAGGTTTCAACATATTCTTCTATTCTAT TAATACATTTCTAAATGCTAGTAAAATAAAATAATGTACTCCTGGCTTGGATTTTTTCTACAGTACTGAACCTATGATTA TCAAAGCCTCTTTATACTTTCTTTGAGCAAAATTTGGGATTCAGTTTGAACATTTGGTAAAACCTGGGTGGGCATGTTGT TTGATGTGACCAGGTTCTAGAGAAATAACTAAAGTTTCTTTCCTTATGTTCTTCAGCAATGCTGACCAGTCTGCATTTGA CCTGTTGATTTGTTTTCTTTCTATTTTCACAGGTTAAACTAGTCTAACATTGCATGTGTGTGATCAATTGATGATTAATA TAGTACTATATTTTGTTGCAACTGAGCTTTTGACATTCATGAACCCATCATCATGGACTTGTAAATTTGGCCCTGGACCT GGAGTTCATTTTGTTTTTTTCTTTGGCATTTTAATTGATGACATTCTAAAATTATTCAAATGTTTGATAAATTTCCTTTT TTTTTTGTTTTTTACTGAAACAGCACAAAAAGAACAACAGTTTCATAAAGCAGCAATGGATTTCATCAAATTCATGAAAC TGCTTTTGAAAAGATAAATATGGCTGTTAATTTTGTGATTATTTTACTAAATATTTGAACTCCAGGAGGGTTTGACTGCG GAAGAAATAACCAAGACAGAGCCTGAGGAGTCAGAGCAGATGCAGGTCATTTTTACATCCCAACACAATCTTCTGTTAAT TTTTGTGAAGCTATCTACTGACTGTTGGCTTTTCTACTCGGAAAAAACAGATGACAGATGCCCTCTGCAGTGTTTGCTCG GAGCGTAAGGCGGGTGTGAGGGATATTATCCGCGCAGGACATTTTGACCGATACAAGGTTTGGATCTTATTTTGTTCCTG ATATCTAAAATGCAAAAAACACCCCCTGCAGTTTTTATGACCTGGTTTGATTGCTTCTATGCTTGTTCAGCTGGAGTGCA TTGCCTGTGGTCATTCCTGGTACGCCTCTCGTGATGCGGTCTCCGTGCTGACATCAGATCCATCAGATTCTTTTCTTTTT TAGGTCTCTGGTAGTAGCAGGTCTTTTCTTTTTTAGGTCTCTGGTAGTAGCAGGACGGTGTTTAGCTCTCTTCCCGTTTG CATTTGTGGAGATAACTAACTAATGTATGTGCAGAATGTTACTCTTCTGCTAGCTTTTGTCTGATTACTGATGATGATTT TAGAAAGATGGTAGTAGGATGACTTGACTGGGTTTTTCTATTGTCCGCGTTCGAATTTAATGCATGTGTTTGTAGACGTT CTTTTGCACGCTGATGGAGATGCAAACATATTTCTCTTTTGGGTTCAGGGTTCATTTTGAAGTCCTTTAGAAAACTGGTA TAAAGTTCATTGAAAAATTACTTGATTTATATTAGTCATAATCTTTTATATGGATTGATATTTGATAGGGTAAATTTTTA TATACGTTAGCATGTTATATTATTTTATATTTGTTCAATAGAGGTCGCGTGTGTGAGTACACGATTCCGTGAGTTTGATG TGTTGATTTTGGGTTCCCTATCTGTCCCGCCAATTCAATCAAGCTTCGTTTTCCACATTGTCTCTTACACAAAGACCTTT TTCTCCTTCTTCCTTAGTCAATTTTACCCCTGCACCTGAAATTACAAAAAGAGCCACTTTAGTTTGACTTGGTCAAAGCA TCTTTTGGAGAAATCCGAGTCTTATCTTTGTCCGGTTGGGAAATAGCAGAGGGGCATCGTTGTCCATAAAATTTACTAAA GTATCTCACACATGCAGATCTGATCCTCAATTCGACAAAACTGATTACGATATTTAATTAATGTTATTTGTCCGGTTGGG AAATAATGTTATCTTTGTACATTTGTCATTTAATGGTGGGTTTCCGTTCTTAATTAATACCACGTCATGTCTGCCCTTCC CAAAGCCCCCATAAGATAATCTTTTTGTTTTGCAAAACAAAGCCACTCCTTTTTAGCACATATATCCTTTAT
CDS sequence (LotjaGi4g1v0425900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGACTCGACGGTTGGCTCAGATTGCAACCAGCGACGACGACGAAGACGAAGCACCCAAGCAAGAGTCTCTCGAAGC GAAGCAGCAGCGGAAGAGGAAGAGGATGAAGCTGCAGGAATATGAAGATGAAGAAGCTGAAGTAGTAGTAGAAGAAGAGG ATGAAGAGAAGAAGAAGAACCAGAGAAATCCCCCTACATCTGACGCAGAAGAAGAGCAGGACGCGCCACTGGAGGATGCT AAGCCTGTTGGCGAATCAATTAGGGTTTCTGGAAAAGGTAGAGGCAGGAAGAGGCATTTTCACTGCTTCGAGTTTGATGG AAACCAATACGCACTGGAGGACCCTGTACTTCTCGTGCCCGAGGGTGAAGATCAAAAGCCGTACGTGGCAATTATTAAGG ACATTGCACAATCTGTAAATGGCAGCATAATGGTCACAGGGCAATGGTTTTACCGTCCTGAAGAAGCAGAAAAAAAAGGC GGTGGCAGTTGGCAATCATGTGATGCAAGGGAGCTCTTTTACAGTTTCCACCGTGATGATGTTCCTGCAGAATCCGTCAT GCATAAGTGTGTGGTGCATTTTGTTCCCATACACAAACAGCTTCCGAATCGTAAGCAGCATCCCGGGTTTATTGTGCGAA AGGTGTACGACACAGTAGAAAGGAAACTCTGGAAGCTAACTGATAAGGACTATGAGGACGGTAAACAGCAAGAAATTGAT GAGCTTGTTCAGAAAACCCTTGAACGTTTGGGTGAACTACCTGACATCGAAACGGATGAAGCTCTTGCTGATCAGGAAGA TCTGACAAAAAATAAAAGAATGATGAGAAAAAAGAGCATTTCACCTCTCGATGTTTCAAAGGAAGAAACAGCTCGAAAGA GTGACCAACCTCTGAAACCTGATACACCATTGAGCTGTGTAAATAATGCCTCAGAGCATTACCGCATACTAGTGGGTTTC AATGCACTAACAGGAGATACCCATCGTGACAAAGGTTTGGAGAAGTTACTTCAAAGTGTTCAATACATGTTTGATAACAA TGGTAGCATGAAGAATGAAGAAAAGGTTAATGACAATTCTGATGACATAAAAAATGGAAGCAGTAACAGAGGTTCAGAAT CAGCAAATGAATATAAAGACAAGGTTCAAAAGAGTTCCAAGCCTTTGATCTGGCCAGGTGTTGCTGTTTCAGCTGTAGCT GCTCTGGAAAAAGCTTCACATGATGCTCTTTCATCAGATTATCAGAAGTACAACCAAAAGCTACGACAATTAGTATTCAA TCTCAGGAACAATGCATTCCTAGCACGGCGTCTATTGAATGGAGAGTTGGAACCTTCGAAAATATTGAATATGACACCTG CTGAGTTGAAGGAGGGTTTGACTGCGGAAGAAATAACCAAGACAGAGCCTGAGGAGTCAGAGCAGATGCAGATGACAGAT GCCCTCTGCAGTGTTTGCTCGGAGCGTAAGGCGGGTGTGAGGGATATTATCCGCGCAGGACATTTTGACCGATACAAGCT GGAGTGCATTGCCTGTGGTCATTCCTGGTACGCCTCTCGTGATGCGGTCTCCGTGCTGACATCAGATCCATCAGATTCTT TTCTTTTTTAG
Protein sequence (LotjaGi4g1v0425900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVTRRLAQIATSDDDEDEAPKQESLEAKQQRKRKRMKLQEYEDEEAEVVVEEEDEEKKKNQRNPPTSDAEEEQDAPLEDA KPVGESIRVSGKGRGRKRHFHCFEFDGNQYALEDPVLLVPEGEDQKPYVAIIKDIAQSVNGSIMVTGQWFYRPEEAEKKG GGSWQSCDARELFYSFHRDDVPAESVMHKCVVHFVPIHKQLPNRKQHPGFIVRKVYDTVERKLWKLTDKDYEDGKQQEID ELVQKTLERLGELPDIETDEALADQEDLTKNKRMMRKKSISPLDVSKEETARKSDQPLKPDTPLSCVNNASEHYRILVGF NALTGDTHRDKGLEKLLQSVQYMFDNNGSMKNEEKVNDNSDDIKNGSSNRGSESANEYKDKVQKSSKPLIWPGVAVSAVA ALEKASHDALSSDYQKYNQKLRQLVFNLRNNAFLARRLLNGELEPSKILNMTPAELKEGLTAEEITKTEPEESEQMQMTD ALCSVCSERKAGVRDIIRAGHFDRYKLECIACGHSWYASRDAVSVLTSDPSDSFLF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 533 | 533 | 7.4E-256 | – | |
| PANTHER | 1 | 533 | 533 | 7.4E-256 | – | |
| MobiDBLite | 1 | 92 | 92 | - | – | |
| MobiDBLite | 9 | 43 | 35 | - | – | |
| Coils | 24 | 61 | 38 | - | – | |
| MobiDBLite | 52 | 69 | 18 | - | – | |
| CDD | 90 | 236 | 147 | 4.19097E-80 | – | |
| Gene3D | 92 | 313 | 222 | 2.9E-34 | ||
| ProSiteProfiles | 108 | 227 | 120 | 19.536 | ||
| SMART | 108 | 227 | 120 | 1.2E-24 | ||
| Pfam | 109 | 225 | 117 | 1.5E-14 | ||
| MobiDBLite | 270 | 296 | 27 | - | – | |
| MobiDBLite | 270 | 306 | 37 | - | – | |
| Pfam | 326 | 475 | 150 | 6.3E-18 | ||
| ProSiteProfiles | 328 | 484 | 157 | 23.539 | ||
| MobiDBLite | 348 | 381 | 34 | - | – | |
| SMART | 361 | 466 | 106 | 4.3E-7 | ||
| Gene3D | 385 | 467 | 83 | 4.8E-10 | ||
| SUPERFAMILY | 391 | 457 | 67 | 4.05E-12 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Chromatin binding | Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase. | ||
| Biological process | Transcription, DNA-templated | The cellular synthesis of RNA on a template of DNA. |
Expression pattern of LotjaGi4g1v0425900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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