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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0435500 |
| Transcript ID | LotjaGi4g1v0435500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ring finger protein, putative; TAIR: AT5G53110.1 RING/U-box superfamily protein; Swiss-Prot: sp|P0CH01|AT21A_ARATH Putative RING-H2 finger protein ATL21A; TrEMBL-Plants: tr|A0A072TUM6|A0A072TUM6_MEDTR RING-H2 finger ATL21A-like protein; Found in the gene: LotjaGi4g1v0435500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:80876668..80879209) extracted from Lotus japonicus Gifu genome v1.2.
TTGTATGCATAATGGTGAACAATCGTTGAGAGTCGAGAGCTAATAGGTCTTGCAAATGGAGAAGCGCACCAAAATGGGAG AAGGGCAACCTTCAAGGAGAAGGTTTTGGGCGTGAGTAGTGAAAGTCCTAGGAAGAATGTGGGTTGTTTAACATATCTTA ATTGTACATTACAATAATGTCATTGGTGAACAACTGGACCAAAATTTGTTGGTTCACCATAAAACAACATACAAAAAACA AATACTATGTTTTTATATTTTCTATTGACTACAACTCAAGAAACTTTGAATATGACTATGGCCAAACATTATAAATTTTA AGGGAATCAAAAACTTCTTTAACCAATTAAAAAAATTAATTTCTAGAACTAGTCACAATATAGTTCCATCAATGGTGTCT CTTTCCACTTGTTTGTTTGTATATATGAAGTGTACTTTGAATTTGAACAGCACAGTTGAAACTTTTGCTTCCTCTCCCTC CCATCCCCATGGGAAAGCCAGGCCACCACCATTGACAGCTACCTACCACCACATAAACCTCTCTATCCATCACCTCACCT CACCACACCACACCAACCAATATTCTCACCCTCTAAACCACCGAAAAATGACCACTCTACCCTCTTTCTTCTCGCTATTC ACCTTCACCATCCTAATTCTCTCTGCAACTTCAGAAACAGAGCCACTCTGTAAAACCACGTCCTGCGAACCCGTTGGACT CCCCATTCAGTTCCCGTTTTCGTTGCGAAACTCCAACCAAAGCCTTCGCTGCGGTTCCCCAGGGTTCGAGCTATCATGTA CCAACACCAGGAGCCAATCCCAACCGTTGATTACTCTCCCAGAATCTGGAGACTTCGTCGTCAAACTCATCTCGCTCGTT GAACAGAGGATTTGGATTAACGACCCTGATAACTGCCTCCCTCAACGAATCATGCGTGACCGTGGATTGAATCTTGAGGG CTCACCTTTCAGAATAAGCGATTACTACACTCTTGTTGATTTCTCATTCTTCAACTGTCCTTCCAATATAACCTCTTCAC CTTTCGTTGACCCTATCACATGCTTGAATTCAAGCTCTGTTTACAACAGCAGCGACGGAAACGGTAACTATTCGGTGGTG GCGATGATGACGGATCCTCCGTTTCCGACGGCGTGGGTGTCGTCGTGTGACTTGATTACGACGGCGAAGATTCCGGTGGA TAATATGCCGTGGCTGTTCTGGACGGATTATAACTCTGATATTCCGTTGCAGTGGGATAATCCTGATTGCAGGAGCTGTG AAGCGCGTGGAGGACGGTGTGGCTTCCGTGATGAACATGATGTTCGTGTTTCTTGTGACGGTCTTCCTTCCCAAAGTCAA GGTATGTTGAGTTTTGACTTGTTTTTTTGTTTCTGTAGTTTCATTCAAACTTGTTTTTCTCCTTTTACCTAACCTAACTG TGTGTACATATACAGAAATGCTTAATTCTATGAATTAGTTAAATCAATAGAAATCATGATTCATGACTAAGTTTACATAG TGCATGTTTCTTTAGAGTTTGATGTATAATACTATCTCTGGTCATTTTTATAAGAATTAAGTAATTTCCCTAGATATTTT AGTTACTATATTGAAATTGGGTTTCATTCATATTAATTTTCCAATATTAGAATTTGAACATGACTTCAGAATCTACATGA TAACCCCATGAATCTTAATTTCACCATGTAGGTTTTTCAAGTAAAACTAAGTATGCTATGGGTATGGGCCTGGGAATACC TGGACTCCTAGGTCTCATTGGGCTTGCATGGATTTTCTGTTGTAAGAAGAACTCAGGTCCTCAACCGCGCCAAACGGGTA CTGAATTGTCTACCCTAATTATACCACATCCTTTGGTTGTAACTATGGGCCTTGATGGGGCTGCTATTGAGAGATACCCT AAAACCCAGCTTGGTGAAAGTGGAAGATTGCCCAGGCCCAATGACAACACTTGCTCCATTTGTCTCAGTGAATACCAGCC CATGGAGACGTTGAGGACCATCCCGGAGTGCAATCACTATTTTCATGCCAATTGCATTGATGGATGGTTGAAGATGAATG CTACGTGCCCCTTGTGTAGGAATTTACCAGAGAGATCCCCTTCATTTGCTCCGTCTTTGCCTTTATCTCAAACTTCTCAA CAATTGTCAATGTAACTGTTACTCTTTATTAGTGTTCTATACAGATTAAACTACTATAGAAGTGAGTGAGTATGATTCAT TTATGTACAAATTTTACGGAATTTCAGTACAGTTGTTGAATAAAATAAAAGCAAACACATTCAGAAGGAAATGTCTATGA TTGAACAAACTACTCTAATCATTAATTAGCATACATTAACAAGTCTATAAGGTAGCGTTTGGCAACGGAACGGAACAGGA CAGAACAGAACAGAATGAGACAGAACAAGATGAAACAGGACAATAATGTTCTATGTGTTGTGTTTGGTAACTCCAAGTCA ATAGAACAGAATCATGATTTTAATTACATATATAACCCTACATGTTTAATATTTGATTGAGG
CDS sequence (LotjaGi4g1v0435500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGTCTCTTTCCACTTGTTTGTTTGTATATATGAAGTGTACTTTGAATTTGAACAGCACAGTTGAAACTTTTGCTTC CTCTCCCTCCCATCCCCATGGGAAAGCCAGGCCACCACCATTGACAGCTACCTACCACCACATAAACCTCTCTATCCATC ACCTCACCTCACCACACCACACCAACCAATATTCTCACCCTCTAAACCACCGAAAAATGACCACTCTACCCTCTTTCTTC TCGCTATTCACCTTCACCATCCTAATTCTCTCTGCAACTTCAGAAACAGAGCCACTCTGTAAAACCACGTCCTGCGAACC CGTTGGACTCCCCATTCAGTTCCCGTTTTCGTTGCGAAACTCCAACCAAAGCCTTCGCTGCGGTTCCCCAGGGTTCGAGC TATCATGTACCAACACCAGGAGCCAATCCCAACCGTTGATTACTCTCCCAGAATCTGGAGACTTCGTCGTCAAACTCATC TCGCTCGTTGAACAGAGGATTTGGATTAACGACCCTGATAACTGCCTCCCTCAACGAATCATGCGTGACCGTGGATTGAA TCTTGAGGGCTCACCTTTCAGAATAAGCGATTACTACACTCTTGTTGATTTCTCATTCTTCAACTGTCCTTCCAATATAA CCTCTTCACCTTTCGTTGACCCTATCACATGCTTGAATTCAAGCTCTGTTTACAACAGCAGCGACGGAAACGGTAACTAT TCGGTGGTGGCGATGATGACGGATCCTCCGTTTCCGACGGCGTGGGTGTCGTCGTGTGACTTGATTACGACGGCGAAGAT TCCGGTGGATAATATGCCGTGGCTGTTCTGGACGGATTATAACTCTGATATTCCGTTGCAGTGGGATAATCCTGATTGCA GGAGCTGTGAAGCGCGTGGAGGACGGTGTGGCTTCCGTGATGAACATGATGTTCGTGTTTCTTGTGACGGTCTTCCTTCC CAAAGTCAAGGTTTTTCAAGTAAAACTAAGTATGCTATGGGTATGGGCCTGGGAATACCTGGACTCCTAGGTCTCATTGG GCTTGCATGGATTTTCTGTTGTAAGAAGAACTCAGGTCCTCAACCGCGCCAAACGGGTACTGAATTGTCTACCCTAATTA TACCACATCCTTTGGTTGTAACTATGGGCCTTGATGGGGCTGCTATTGAGAGATACCCTAAAACCCAGCTTGGTGAAAGT GGAAGATTGCCCAGGCCCAATGACAACACTTGCTCCATTTGTCTCAGTGAATACCAGCCCATGGAGACGTTGAGGACCAT CCCGGAGTGCAATCACTATTTTCATGCCAATTGCATTGATGGATGGTTGAAGATGAATGCTACGTGCCCCTTGTGTAGGA ATTTACCAGAGAGATCCCCTTCATTTGCTCCGTCTTTGCCTTTATCTCAAACTTCTCAACAATTGTCAATGTAA
Protein sequence (LotjaGi4g1v0435500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVSLSTCLFVYMKCTLNLNSTVETFASSPSHPHGKARPPPLTATYHHINLSIHHLTSPHHTNQYSHPLNHRKMTTLPSFF SLFTFTILILSATSETEPLCKTTSCEPVGLPIQFPFSLRNSNQSLRCGSPGFELSCTNTRSQSQPLITLPESGDFVVKLI SLVEQRIWINDPDNCLPQRIMRDRGLNLEGSPFRISDYYTLVDFSFFNCPSNITSSPFVDPITCLNSSSVYNSSDGNGNY SVVAMMTDPPFPTAWVSSCDLITTAKIPVDNMPWLFWTDYNSDIPLQWDNPDCRSCEARGGRCGFRDEHDVRVSCDGLPS QSQGFSSKTKYAMGMGLGIPGLLGLIGLAWIFCCKKNSGPQPRQTGTELSTLIIPHPLVVTMGLDGAAIERYPKTQLGES GRLPRPNDNTCSICLSEYQPMETLRTIPECNHYFHANCIDGWLKMNATCPLCRNLPERSPSFAPSLPLSQTSQQLSM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 72 | 72 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 26 | 26 | - | – | |
| Phobius | 73 | 92 | 20 | - | – | |
| PANTHER | 79 | 465 | 387 | 1.3E-133 | – | |
| PANTHER | 79 | 465 | 387 | 1.3E-133 | – | |
| Phobius | 93 | 330 | 238 | - | – | |
| Pfam | 100 | 209 | 110 | 6.5E-8 | ||
| Phobius | 331 | 353 | 23 | - | – | |
| TMHMM | 331 | 353 | 23 | - | – | |
| Phobius | 354 | 477 | 124 | - | – | |
| Gene3D | 379 | 457 | 79 | 8.0E-20 | ||
| SUPERFAMILY | 406 | 455 | 50 | 2.72E-19 | – | |
| Pfam | 409 | 453 | 45 | 2.2E-12 | ||
| CDD | 410 | 453 | 44 | 1.35983E-17 | – | |
| SMART | 411 | 452 | 42 | 2.1E-7 | ||
| ProSiteProfiles | 411 | 453 | 43 | 12.74 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polysaccharide binding | Interacting selectively and non-covalently with any polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. |
Expression pattern of LotjaGi4g1v0435500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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