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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0442400 |
| Transcript ID | LotjaGi4g1v0442400.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Asparagine--tRNA ligase; TAIR: AT5G56680.1 Class II aminoacyl-tRNA and biotin synthetases superfamily protein; Swiss-Prot: sp|Q9SW96|SYNC1_ARATH Asparagine--tRNA ligase, cytoplasmic 1; TrEMBL-Plants: tr|I1K622|I1K622_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0442400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:81593994..81596684) extracted from Lotus japonicus Gifu genome v1.2.
ACTTCTTCTCCGCCGACGGACCAACTCGCCGCCGCCACCATCACCGACGAGGTTCCCAAGGAGCAATTCTCCGACCGCGT TCTGATCCAGTCCATAATCCGCCGCAGCGACGGCGGCTCAGGTCTTGCCGGTCAGAAAGCCAGGGTCGGCGGTTGGGTGA AGACTGGAAGGAAGGCTGACAAGGACGCATTCGCCTTCCTGGAACTCAACGACGGTTCCTGCGCCGGAAACCTGCAGGTG ATTGTGGAGGCTTCACTCGCTGAGTTAGGACAAATCGTTCAAACCGGCACGTGCATCGTCGTCGACGGCCACCTTAAGCT TCCTCCTGCCGGCACCAAGCAGAAGATCGAGCTTCGCGCCGATAAGGTTCTCCATGTGGGTCCTGTTGATCCCGCCAAGT ACCCTTTGCCCAAAAGCAGACTCACTCTCGAGTTCTTGAGAGATTACGTTCACCTTCGCTCTAGAACCAACACGGTACTT CCCTTTCTTTCTATTTTCATTTTCCTATCAGTTTTTGGTGCCAATGGGTAATTGATTATAGCTCTATAAGCTTAAGATGA TGTGTATTTAGATTTGTAAATTTGATTTTTCTATGAAAATTGATTGTTAGTTGAAGGTAGTGTTAAGTAGAATTCAGTAT GAAATTCTCAACAGTACACATGCCTGATGCAAAATCACATTTAGTTAAAATCAACCAATCATGCTAGTAGATTTGTTTTT CGCAAATTTAGAAATGATGTGTTTGTGAAGCTCTTAAATTGGTTGATATGATTGTTATTGGGTTTGAATGCAGATCTCTG CTGTTGCTCGAATTCGGAATGCTCTTGCTTATGCTACGCATACATTTTTCTACAAGCATGGGTTTCTTTATGTGCACACG CCAATTGTCACGACGAGTGATTGTGAGGGTGCGGGTGAAATGTTTCAAGTGACAACCTTGCTCAATGAAGCAGAGAAGCT GGAGAAGGAACTGATACAGAATCCTCCTCCCACAGAAGCTGACGTAGAAGCTGCTAGGCTTGTTGTTCAGGAGAAAGGGG CGATTGTTGCCCAGTTGAAATCTGCTAAAGCTAGTAAGCAGGAAATCAGTGCTTCTGTGGATGAGCTTAAAAAAGCAAAG GAGAATTTCTCTAAGGTGGAGGAGAGATCTAAGCTTAAGCCCGGTATTCCTCAAAAGGATGGAAAGGTTGACTATACTAA AGATTTCTTTGCCCGTCAAGCATTTCTAACGGTTTCAGGCCAGCTTCAGGTTGAGTCTTATGCATGTGCTCTTAGTAGTG TGTATACATTCGGGCCAACATTTCGTGCTGAGAATTCTCACACTTCGAGGCATTTGGCAGAGTTTTGGATGGTAGAGCCT GAAATTGCATTTGCAGACTTAACGGTATACGGAACTTGAACTCACTCTCAATTTATTATGATTATCATCAATGGCTATTG TTTTAAGGACACTTACTGTTTTCCTCCATCCTCTCTGGATCTAATTTTTTATCATCAGATATGTTATTTTTTGCTGTTGT TGTGGTAATACTTATCAGCCCAAAGTGAATTAAAACATCTGATTTCTAGTGCAATAAACTTGTTAATTTTCTAATGCAAT GTTTGGTTCTTTTGCATTTCTTGTGCTGGGAATATTAAAGTTCATGGTTTTGTATTTTTTTGTAGGATGATATGAAGTGT GCCGAGGCATATGTGAAATTCATGTGTCAGTGGTTACTTGATAACTGTCTTGAAGATATGGAATTTATGGCGGACAAGTT TGATAAAGGTTGCATCGATCGTTTGAAAATGGTGGCTTCCACCCCCTTTATTCAACTTTCATATACAGAAGCAGTAGAAA TATTGGAGGAAGCTGTCAAGAATGGTAAGAAATTTGAGAATGAAGTAAAATGGGGGATTGACTTAGCATCTGAGCATGAA AGGTACTTCTAATTTAATTTTTTCAAGTTCTTGTTCTTATTGAAATGTGTTGTGTGATATCTTCAGGGTGTGATGTTTTG CAGATACCTAACTGAGGTAAAGTATCAGAAACCTGTCATTGTCTATAACTATCCAAAAGATATCAAAGCATTCTACATGC GCCTCAATGATGACTCAAAGACAGTTGCTGCTATGGATGTGCTTGTCCCAAAGGTGTGTATCCTACATCTTTTGTTTTGA ACGTATTTTGACACCAAACATAATTTAGAGAGGACATTATGATGTATCTAACTCCACCTAGTGAGAAAAGACTGTTGTTT TGTTGTTATATCTTGATTCCTAGTGGCTTTTGTTGGTTCGCATAATAGAAACATGTAAATGTAATTTCAGGTTGGAGAGT TAATTGGTGGAAGCCAAAGGGAAGAGCGGTATGATGTCATTGTAGAAAGGTAAATTTTACTTACCTCCAACACATCCTAC TTCACTTTTTTAGTTTATCTTTTGCTTAAGTTGTTTCCTTTAAGCTAAGGATTTTGCATTCCTTGGATGATGGTTAACTT GATTTTTTCTTATTTGCATTATTGCAGAATAAAGGAGATGGGGCTGCCTCTTGAGCCATATGAGTGGTACCTTGATCTGA GGCGTTATGGAACAGTGAAACATGCTGGATTTGGTCTTGGCTTTGAAAGGATGATTCTTTTCGCAACCGGTATCGAAAAT ATTAGAGATGTGATTCCCTTCCCACGATATCCTGGCAGAGCTGATCTATGA
CDS sequence (LotjaGi4g1v0442400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAAGGTACTTCTAATTTAGGTGTGATGTTTTGCAGATACCTAACTGAGGTAAAGTATCAGAAACCTGTCATTGTCTA TAACTATCCAAAAGATATCAAAGCATTCTACATGCGCCTCAATGATGACTCAAAGACAGTTGCTGCTATGGATGTGCTTG TCCCAAAGGTTGGAGAGTTAATTGGTGGAAGCCAAAGGGAAGAGCGGTATGATGTCATTGTAGAAAGAATAAAGGAGATG GGGCTGCCTCTTGAGCCATATGAGTGGTACCTTGATCTGAGGCGTTATGGAACAGTGAAACATGCTGGATTTGGTCTTGG CTTTGAAAGGATGATTCTTTTCGCAACCGGTATCGAAAATATTAGAGATGTGATTCCCTTCCCACGATATCCTGGCAGAG CTGATCTATGA
Protein sequence (LotjaGi4g1v0442400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKGTSNLGVMFCRYLTEVKYQKPVIVYNYPKDIKAFYMRLNDDSKTVAAMDVLVPKVGELIGGSQREERYDVIVERIKEM GLPLEPYEWYLDLRRYGTVKHAGFGLGFERMILFATGIENIRDVIPFPRYPGRADL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 126 | 126 | 8.523 | ||
| Gene3D | 3 | 135 | 133 | 4.8E-45 | – | |
| SUPERFAMILY | 10 | 131 | 122 | 8.71E-42 | – | |
| PANTHER | 13 | 136 | 124 | 7.2E-66 | – | |
| PANTHER | 13 | 136 | 124 | 7.2E-66 | – | |
| Pfam | 13 | 129 | 117 | 3.4E-35 | ||
| PRINTS | 51 | 67 | 17 | 9.1E-7 | ||
| PRINTS | 91 | 105 | 15 | 9.1E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Aminoacyl-tRNA ligase activity | Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | TRNA aminoacylation for protein translation | The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, to be used in ribosome-mediated polypeptide synthesis. |
Expression pattern of LotjaGi4g1v0442400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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