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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0446200 |
| Transcript ID | LotjaGi4g1v0446200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT2G22070.1 pentatricopeptide (PPR) repeat-containing protein; Swiss-Prot: sp|Q9SHZ8|PP168_ARATH Pentatricopeptide repeat-containing protein At2g22070; TrEMBL-Plants: tr|A0A0B2P5H5|A0A0B2P5H5_GLYSO Pentatricopeptide repeat-containing protein; Found in the gene: LotjaGi4g1v0446200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:81885963..81888903) extracted from Lotus japonicus Gifu genome v1.2.
GTTTTAGGGTTCTAGCTTAGCTTATGTCATTGTGTTTGTTTTTGTTGTCATGGTTTAGAAATGGTTCTCATTTTCAAGCT CCAAAGATGGTGTAAGATTACCTTGCTTGTGTGTGCGCTGATTTGTTTCCAACAACCGATGATGAATGTGAAGCAAACAA CGCAAACGCTTCGGAAACCCATGTATCGTGCGTTCTCTCGCTGCCTCACTCCTCTGAATGACAACACTTCTCTGAATGAC AACTACACACGTCTCGTGCTTCACTGTCTTCGAACCAACGACTGCATTCAAGCCAAGAAATTGGAGTCTGACATGCAGCT TCACCATTTTAAACCCGAAGACACCTTCATCCACAACCAGCTTCTTCACTTGTATGCAAAATGCGGCAAGCTCTCAGATG CCCAGAACCTGTTTGATAAAATGTCTCACAGAGATGTGAATTCCTGGAATGCCTTGCTTTCTGCTTATGCCAAGGCGGGG TTGGTTGAACATTTGTATGAAGTCTTTGATCAAATGCCTCGTCGTGATTCCGTTTCATATAACACGTTGATTACTTGTTT TGCGAAAAAAAGGCTTTCAGGCAGAGCGTTGAGAGTTTTGGTGAGGATGCAGGAAGATGGGTTTCAACTCACCCAGCATA CCTATGTGAATGCCCTGCAAGCATGTTCTCAGTTATTGGATTTTCGGCTTGGGAAGCAGGTTCATGGGAGGGTGGTTGTT GGTAATTTTGTGAAAAATGCATTTGTTTGGAATGCTTTGACTGATATGTATGCTAAATGTGGTGGTGATATAGACAGGGC GCGGTGGTTGTTTGATGGGATGATTGAGAAGAATGTTGTTTCGTGGAACCTCATGATCTCTGGGTATGTGAAAATGGGCA AACTTGACGAGTGCACTCAGTTGTTTGATGAGATGCAGTTATTTGGTTTGAAACCTGACCAGATTACAGTTTCTAATGTT CTTAAGGCTTACATTCAATCTGGACGTTTAGATGAGGCGAGGGACATGTTTAGTAAAATGCCCGAAAAGGATAAAATCTG TTGGACGACGATGATAGCTGGTTACGCACAAAATGGAAGAGAGGAGGGTGCTTTGATGTTGTTTGGTGACATGCTACGTG CAAGTGTTAGACCTGACAGTTTCACCATCTCAAGTGTGGTTAGCTCCTGTGCCAAGCTAGCTTCTTTGTGTCACGGTCAG GTTGTCCATGGAAAATTAATTCTTATGGGTGTTGATGCTGACATGCTGGTCTCGAGTGCTCTTGTTGATATGTACTGCAA GTGTGGAGTCACTTTGGATGCTTGGGATATTTTTGAAACTATGCCTGTTCGGAATCTGATCACTTGGAATGCAATGATTC TGGGTTATGCACAAAATGGGCAGGCTCAGGAGGCCTTGGCTTTGTATGAAAGAATGCTGCAAGATAATTTGAAACCTGAT AACATTAGTTTTGTTGGTATCTTATCTGCTTGTAAAAATGCTGATATGGTCAAAGAAGGACAGAAGTATTTCGATTCAAT CACTGAACGAGGAATGACACCCACATTGGATCACTATGCATGTATGGTCACTCTCCTTGGTCGGTCAGGTAGTGTCGATA AAGCAGTGGATCTGATCAAAGGTATGCCTCACAAACCGGATTACCTGATTTGGTCCGCCTTACTATCTGTTTGTGGCAAG GATGACATGAAGATTGCAGAGTTGGCAGCTAGTCATCTCTTTCGATTGGATCCACAAAATGCTGGACCATATATCATGCT TTCCAACTTGTATGCTGCTTGTGGGATGTGGAAAGAAAAAGCTGATGTAAGATCTCTCATGAAGAACAAATGTGCAAAGA AGTTTGCTGCATACAGTTGGGTTGAGGTTGAGAATGAAGTCCACAGGTTTGTTTCAGAAGATCGCACTCACCCAGAAGTA GAAAGAATATATGATGAATTGAACAGATTGATCTCAAAGTTGCGACGAATTGGGTATAATCCAGATACAAGTCATGTTCT ACATAATGTGGGGGAGGAAGAAAAATTTAGATCCATCTCTTGCCACAGTGAGAAACTTGCTGTTGCGTATGCTTTAATTA GAAAGCCCAATGGAGTTGCACCAATACGGATCATGAAGAACATACGTATCTGTAATGACTGTCATGCATTTATGAAGTTC GCATCCATCACTATAGGACGGCCAGTCATTGTGAGAGATTCAAATAGGTTTCATCATTTCTTTGATGGGAAGTGTTCTTG CAAGGATCATTGGTGAAGTCTCAATCAGATGGTAATCTGCTGTGCTTTTAACTGACTCCAAATGAAGGGTGCTACCGAGG CAATATGCATTTTGCATCTTCATATAAGCTTTTGAAACAAGGGACAAAACCAAGATAAACAATACTGATGAAAATTTTTC TTGTGACGCAATGGAGCTTCAGACGGTTTGGATTGCACAACAAGTAATCTCTTGGTTTAGAGATTGATACTTGACAATTG ACATTGAATGACACGGTAAAGCCTTGAATAAAATGTCCGAGAAGTTATTAAATGCCCATAATTTACTGAGAAATTGGGAT TAAAATGTTTGTGACATATCACTTATGTAACTCATTAGAGGCAACCACTTTGATAGAACTTGGTACAGAAACATAGAGAG AGAAAGAAAACTGTTATTGAACATTTTGGCTAGGCCACTCCAACTATTAGGCCCAGACTATTTAATGGTAGGTTTTTTTG TCAAATTTTATGGTAGATTAAATTGTATTTTTTTAATTTGGGGCCAGTGGATTGGCCCTAACCCACAGGGTTTAGTGGAC TTTTTGGTCTTGTGGGTTTTGGGATTACTTTTTTGTACACCCTAACCTAACCCTACAAAAAAGGGAGTTCCATTGTAAAC CAAAGGAAATATAGTAGATGGAAGATTTATCATTGAAGGAAATAATTTTATTGATTATTGC
CDS sequence (LotjaGi4g1v0446200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTCTCATTTTCAAGCTCCAAAGATGGTGTAAGATTACCTTGCTTGTGTGTGCGCTGATTTGTTTCCAACAACCGAT GATGAATGTGAAGCAAACAACGCAAACGCTTCGGAAACCCATGTATCGTGCGTTCTCTCGCTGCCTCACTCCTCTGAATG ACAACACTTCTCTGAATGACAACTACACACGTCTCGTGCTTCACTGTCTTCGAACCAACGACTGCATTCAAGCCAAGAAA TTGGAGTCTGACATGCAGCTTCACCATTTTAAACCCGAAGACACCTTCATCCACAACCAGCTTCTTCACTTGTATGCAAA ATGCGGCAAGCTCTCAGATGCCCAGAACCTGTTTGATAAAATGTCTCACAGAGATGTGAATTCCTGGAATGCCTTGCTTT CTGCTTATGCCAAGGCGGGGTTGGTTGAACATTTGTATGAAGTCTTTGATCAAATGCCTCGTCGTGATTCCGTTTCATAT AACACGTTGATTACTTGTTTTGCGAAAAAAAGGCTTTCAGGCAGAGCGTTGAGAGTTTTGGTGAGGATGCAGGAAGATGG GTTTCAACTCACCCAGCATACCTATGTGAATGCCCTGCAAGCATGTTCTCAGTTATTGGATTTTCGGCTTGGGAAGCAGG TTCATGGGAGGGTGGTTGTTGGTAATTTTGTGAAAAATGCATTTGTTTGGAATGCTTTGACTGATATGTATGCTAAATGT GGTGGTGATATAGACAGGGCGCGGTGGTTGTTTGATGGGATGATTGAGAAGAATGTTGTTTCGTGGAACCTCATGATCTC TGGGTATGTGAAAATGGGCAAACTTGACGAGTGCACTCAGTTGTTTGATGAGATGCAGTTATTTGGTTTGAAACCTGACC AGATTACAGTTTCTAATGTTCTTAAGGCTTACATTCAATCTGGACGTTTAGATGAGGCGAGGGACATGTTTAGTAAAATG CCCGAAAAGGATAAAATCTGTTGGACGACGATGATAGCTGGTTACGCACAAAATGGAAGAGAGGAGGGTGCTTTGATGTT GTTTGGTGACATGCTACGTGCAAGTGTTAGACCTGACAGTTTCACCATCTCAAGTGTGGTTAGCTCCTGTGCCAAGCTAG CTTCTTTGTGTCACGGTCAGGTTGTCCATGGAAAATTAATTCTTATGGGTGTTGATGCTGACATGCTGGTCTCGAGTGCT CTTGTTGATATGTACTGCAAGTGTGGAGTCACTTTGGATGCTTGGGATATTTTTGAAACTATGCCTGTTCGGAATCTGAT CACTTGGAATGCAATGATTCTGGGTTATGCACAAAATGGGCAGGCTCAGGAGGCCTTGGCTTTGTATGAAAGAATGCTGC AAGATAATTTGAAACCTGATAACATTAGTTTTGTTGGTATCTTATCTGCTTGTAAAAATGCTGATATGGTCAAAGAAGGA CAGAAGTATTTCGATTCAATCACTGAACGAGGAATGACACCCACATTGGATCACTATGCATGTATGGTCACTCTCCTTGG TCGGTCAGGTAGTGTCGATAAAGCAGTGGATCTGATCAAAGGTATGCCTCACAAACCGGATTACCTGATTTGGTCCGCCT TACTATCTGTTTGTGGCAAGGATGACATGAAGATTGCAGAGTTGGCAGCTAGTCATCTCTTTCGATTGGATCCACAAAAT GCTGGACCATATATCATGCTTTCCAACTTGTATGCTGCTTGTGGGATGTGGAAAGAAAAAGCTGATGTAAGATCTCTCAT GAAGAACAAATGTGCAAAGAAGTTTGCTGCATACAGTTGGGTTGAGGTTGAGAATGAAGTCCACAGGTTTGTTTCAGAAG ATCGCACTCACCCAGAAGTAGAAAGAATATATGATGAATTGAACAGATTGATCTCAAAGTTGCGACGAATTGGGTATAAT CCAGATACAAGTCATGTTCTACATAATGTGGGGGAGGAAGAAAAATTTAGATCCATCTCTTGCCACAGTGAGAAACTTGC TGTTGCGTATGCTTTAATTAGAAAGCCCAATGGAGTTGCACCAATACGGATCATGAAGAACATACGTATCTGTAATGACT GTCATGCATTTATGAAGTTCGCATCCATCACTATAGGACGGCCAGTCATTGTGAGAGATTCAAATAGGTTTCATCATTTC TTTGATGGGAAGTGTTCTTGCAAGGATCATTGGTGA
Protein sequence (LotjaGi4g1v0446200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVLIFKLQRWCKITLLVCALICFQQPMMNVKQTTQTLRKPMYRAFSRCLTPLNDNTSLNDNYTRLVLHCLRTNDCIQAKK LESDMQLHHFKPEDTFIHNQLLHLYAKCGKLSDAQNLFDKMSHRDVNSWNALLSAYAKAGLVEHLYEVFDQMPRRDSVSY NTLITCFAKKRLSGRALRVLVRMQEDGFQLTQHTYVNALQACSQLLDFRLGKQVHGRVVVGNFVKNAFVWNALTDMYAKC GGDIDRARWLFDGMIEKNVVSWNLMISGYVKMGKLDECTQLFDEMQLFGLKPDQITVSNVLKAYIQSGRLDEARDMFSKM PEKDKICWTTMIAGYAQNGREEGALMLFGDMLRASVRPDSFTISSVVSSCAKLASLCHGQVVHGKLILMGVDADMLVSSA LVDMYCKCGVTLDAWDIFETMPVRNLITWNAMILGYAQNGQAQEALALYERMLQDNLKPDNISFVGILSACKNADMVKEG QKYFDSITERGMTPTLDHYACMVTLLGRSGSVDKAVDLIKGMPHKPDYLIWSALLSVCGKDDMKIAELAASHLFRLDPQN AGPYIMLSNLYAACGMWKEKADVRSLMKNKCAKKFAAYSWVEVENEVHRFVSEDRTHPEVERIYDELNRLISKLRRIGYN PDTSHVLHNVGEEEKFRSISCHSEKLAVAYALIRKPNGVAPIRIMKNIRICNDCHAFMKFASITIGRPVIVRDSNRFHHF FDGKCSCKDHW
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 12 | 12 | - | – | |
| SignalP_EUK | 1 | 19 | 19 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 28 | 28 | - | – | |
| Phobius | 1 | 24 | 24 | - | – | |
| SUPERFAMILY | 7 | 348 | 342 | 5.9E-7 | ||
| Phobius | 13 | 20 | 8 | - | – | |
| Phobius | 21 | 24 | 4 | - | – | |
| Phobius | 25 | 731 | 707 | - | – | |
| Gene3D | 39 | 185 | 147 | 5.7E-24 | ||
| ProSiteProfiles | 58 | 92 | 35 | 5.218 | ||
| PANTHER | 69 | 176 | 108 | 1.7E-114 | – | |
| ProSiteProfiles | 94 | 124 | 31 | 9.328 | ||
| Pfam | 98 | 124 | 27 | 0.002 | ||
| ProSiteProfiles | 125 | 159 | 35 | 10.918 | ||
| TIGRFAM | 128 | 156 | 29 | 4.9E-6 | ||
| Pfam | 128 | 155 | 28 | 8.8E-6 | ||
| Pfam | 156 | 202 | 47 | 5.3E-8 | ||
| TIGRFAM | 158 | 190 | 33 | 6.7E-6 | ||
| ProSiteProfiles | 160 | 190 | 31 | 7.202 | ||
| PANTHER | 160 | 323 | 164 | 1.7E-114 | – | |
| Gene3D | 186 | 323 | 138 | 7.1E-33 | ||
| ProSiteProfiles | 226 | 257 | 32 | 9.35 | ||
| SUPERFAMILY | 257 | 575 | 319 | 2.8E-8 | ||
| Pfam | 257 | 304 | 48 | 1.6E-13 | ||
| ProSiteProfiles | 258 | 292 | 35 | 13.482 | ||
| TIGRFAM | 260 | 293 | 34 | 1.8E-9 | ||
| ProSiteProfiles | 293 | 323 | 31 | 9.558 | ||
| TIGRFAM | 296 | 323 | 28 | 7.3E-4 | ||
| PANTHER | 304 | 372 | 69 | 1.7E-114 | – | |
| Pfam | 324 | 372 | 49 | 2.9E-10 | ||
| Gene3D | 324 | 385 | 62 | 1.4E-5 | ||
| ProSiteProfiles | 324 | 358 | 35 | 11.279 | ||
| TIGRFAM | 326 | 360 | 35 | 7.1E-8 | ||
| ProSiteProfiles | 359 | 393 | 35 | 5.755 | ||
| PANTHER | 364 | 587 | 224 | 1.7E-114 | – | |
| Gene3D | 386 | 476 | 91 | 5.3E-21 | ||
| ProSiteProfiles | 394 | 424 | 31 | 7.52 | ||
| Pfam | 425 | 471 | 47 | 9.0E-11 | ||
| ProSiteProfiles | 425 | 459 | 35 | 13.033 | ||
| TIGRFAM | 427 | 460 | 34 | 7.1E-8 | ||
| ProSiteProfiles | 460 | 494 | 35 | 8.342 | ||
| Gene3D | 477 | 626 | 150 | 1.9E-11 | ||
| ProSiteProfiles | 495 | 525 | 31 | 6.971 | ||
| Pfam | 499 | 523 | 25 | 0.5 | ||
| ProSiteProfiles | 560 | 594 | 35 | 5.634 | ||
| Pfam | 599 | 720 | 122 | 7.2E-38 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi4g1v0446200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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